Избранные публикации 2013 года

2013


Raghavan M., Skoglund P., Graf K., Metspalu M., Albrechtsen A., Moltke I., Rasmussen S., Stafford_Jr T., Orlando L., Metspalu E., Karmin M., Tambets K., Rootsi S., Mägi R., Campos P., Balanovska E., Balanovsky O., Khusnutdinova E., Litvinov S., Osipova L., Fedorova S., Voevoda M., DeGiorgio M., Sicheritz-Ponten T., Brunak S., Demeshchenko S., Kivisild T., Villems R., Nielsen R., Jakobsson M., Willerslev E.

 

 Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans.

Nature  2014 Jan 2;505(7481):87-91.

doi: 10.1038/nature12736.

Epub 2013 Nov 20

 

Imact Factor

38.597

Brandt G., Haak W., Adler C.J., Roth C., Szécsényi-Nagy A., Karimnia S., Möller-Rieker S., Meller H., Ganslmeier R., Friederich S., Dresely V., Nicklisch N., Pickrell J.K., Sirocko F., Reich D., Cooper A., Alt K.W., The Genographic Consortium (...Balanovsky O. )

 

Ancient DNA reveals key stages in the formation of central European mitochondrial genetic diversity.

The oldest known genome of a modern human solves long-standing puzzles about the New World's genetic heritage.

Подробности здесь		 Science. 2013. Oct 11. 342(6155). P. 257-261 31.027

Davydov II, Wohlgemuth I, Artamonova II, Urlaub H, Tonevitsky AG, Rodnina MV.

Evolution of the protein stoichiometry in the L12 stalk of bacterial and organellar ribosomes.

 

Nat Commun. 2013; 4:1387. doi: 10.1038/ncomms2373.

10.015

Brotherton P, Haak W, Templeton J, Brandt G, Soubrier J, Jane Adler C, Richards SM, Sarkissian CD, Ganslmeier R, Friederich S, Dresely V, van Oven M, Kenyon R, Van der Hoek MB, Korlach J, Luong K, Ho SY, Quintana-Murci L, Behar DM, Meller H, Alt KW, Cooper A;  Genographic Consortium, Balanovska E, Balanovsky O. et al.,

 

Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans.

Nat Commun. 2013;  4:1764.

10.015

Costa MD, Pereira JB, Pala M, Fernandes V, Olivieri A, Achilli A, Perego UA, Rychkov S, Naumova O, Hatina J, Woodward SR, Eng KK, Macaulay V, Carr M, Soares P, Pereira L, Richards MB.

A substantial prehistoric European ancestry amongst Ashkenazi maternal lineages.

 Nat Commun. 2013 Oct 8;4:2543 10.015

Houston I, Peter CJ, Mitchell A, Straubhaar J, Rogaev E, Akbarian S.

Epigenetics in the human brain.

Neuropsychopharmacology. 2013 Jan; 38(1):183-9

8.678

Der Sarkissian C, Balanovsky et al., Genographic Consortium.

Ancient DNA reveals prehistoric gene-flow from siberia in the complex human population history of North East Europe.

 

PLoS Genet. 2013; 9(2):e1003296.

8.517 .

Kulakovskiy IV, Medvedeva YA, Schaefer U, Kasianov AS, Vorontsov IE, Bajic VB, Makeev VJ.

 

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models.

Nucleic Acids Res. 2013 Jan; 41(Database issue):D195-202.

8.278

Leon DA, Shkolnikov VM, Borinskaya S, Casas JP, Evans A, Gil A, Kee F, Kiryanov N, McKee M, O'Doherty MG, Ploubidis GB, Polikina O, Vassiliev M, Blankenberg S, Watkins H.

 

Hazardous alcohol consumption is associated with increased levels of B-type natriuretic peptide: evidence from two population-based studies.

Eur J Epidemiol. 2013 May; 28(5):393-404.

5.118

Makeev VJ.

Predictive biology using systems and integrative analysis and methods.

 

J Biomol Struct Dyn. 2013; 31(1):1-3.

4.986

Permina EA, Medvedeva YA, Baeck PM, Hegde SR, Mande SC, Makeev VJ.

Identification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets.

 

J Biomol Struct Dyn. 2013; 31(1):115-24.

4.986

Naumova OY, Lee M, Rychkov SY, Vlasova NV, Grigorenko EL.

Gene expression in the human brain: the current state of the study of specificity and spatiotemporal dynamics.

 

Child Dev. 2013 Jan-Feb; 84(1):76-88. Review.

4.915

Elhaik E, Greenspan E, Staats S, Krahn T, Tyler-Smith C, Xue Y, Tofanelli S, Francalacci P, Cucca F, Pagani L, Jin L, Li H, Schurr TG, Greenspan B, Spencer Wells R;  Genographic Consortium (Balanovsky O)

 

The GenoChip: a new tool for genetic anthropology.

Genome Biol Evol. 2013; 5(5):1021-31.

4.759

McDonald H, Borinskaya S, Kiryanov N, Gil A, Helander A, Leon DA.

Comparative performance of biomarkers of alcohol consumption in a population sample of working-aged men in Russia: the Izhevsk Family Study.

 

Addiction. 2013 Sep; 108(9):1579-89.

4.746

Rębała K, Martínez-Cruz B, Tönjes A, Kovacs P, Stumvoll M, Lindner I, Büttner A, Wichmann HE, Siváková D, Soták M, Quintana-Murci L, Szczerkowska Z, Comas D; Genographic Consortium (Balanovsky O)

Contemporary paternal genetic landscape of Polish and German populations: from early medieval Slavic expansion to post-World War II resettlements.

 Eur J Hum Genet. 2013;21(4):415-22 4.319

Utkina LL, Andreev YA, Rogozhin EA, Korostyleva TV, Slavokhotova AA, Oparin PB, Vassilevski AA, Grishin EV, Egorov TA, Odintsova TI.

Genes encoding 4-Cys antimicrobial peptides in wheat Triticum kiharae Dorof. et Migush.: multimodular structural organization, instraspecific variability, distribution and role in defence.

 

FEBS J. 2013 Aug;  280(15):3594-608.

4.25

Bykova NA, Favorov AV, Mironov AA.

Hidden Markov models for evolution and comparative genomics analysis.

 

PLoS One. 2013 Jun 7; 8(6):e65012.

3.730

Fantin YS, Neverov AD, Favorov AV, Alvarez-Figueroa MV, Braslavskaya SI, Gordukova MA, Karandashova IV, Kuleshov KV, Myznikova AI, Polishchuk MS, Reshetov DA, Voiciehovskaya YA, Mironov AA, Chulanov VP.

 

Base-calling algorithm with vocabulary (BCV) method for analyzing population sequencing chromatograms.

PLoS One. 2013;  8(1):e54835.

3.730

Boattini A, Martinez-Cruz B, Sarno S, Harmant C, Useli A, Sanz P, Yang-Yao D, Manry J, Ciani G, Luiselli D, Quintana-Murci L, Comas D, Pettener D;  Genographic Consortium. (Balanovsky O)

 

Uniparental markers in Italy reveal a sex-biased genetic structure and different historical strata.

PLoS One. 2013 May 29; 8(5):e65441.

3.730

Badro DA, Douaihy B, Haber M, Youhanna SC, Salloum A, Ghassibe-Sabbagh M, Johnsrud B, Khazen G, Matisoo-Smith E, Soria-Hernanz DF, Wells RS, Tyler-Smith C, Platt DE, Zalloua PA;  Genographic Consortium. (Balanovsky O)

 

Y-chromosome and mtDNA genetics reveal significant contrasts in affinities of modern Middle Eastern populations with European and African populations.

PLoS One. 2013; 8(1):e54616.

3.730

Bogomazova AN, Lagarkova MA, Panova AV, Nekrasov ED, Kiselev SL.

Reactivation of Х chromosome upon reprogramming leads to changes in the replication pattern and 5hmC accumulation.

 

Chromosoma. 2013 Aug 28.

3.340

Dumas E, Atyame CM, Milesi P, Fonseca DM, Shaikevich EV, Unal S, Makoundou P, Weill M, Duron O.

 

Population structure of Wolbachia and cytoplasmic introgression in a complex of mosquito species.

 BMC Evol Biol. 2013 Sep 3;13:181 3.29

Gordienko EN, Kazanov MD, Gelfand MS.

Evolution of Pan-Genomes of Escherichia coli, Shigella spp., and Salmonella enterica.

 

J Bacteriol. 2013 Jun;195(12):2786-92

3.194

Lysenkova LN, Turchin KF, Korolev AM, Dezhenkova LG, Bekker OB, Shtil AA, Danilenko VN, Preobrazhenskaya MN.

Synthesis and cytotoxicity of oligomycin A derivatives modified in the side chain.

 

 

Bioorg Med Chem. 2013 Jun 1;21(11):2918-24.

2.903
Butovskaya PR, Butovskaya ML, Vasilyev VA, Lazebny OE, Shibalev DV, Veselovskaya EV, Udina IG, Ryskov A.P

Мolecular-Genetic Polymorphisms of Dopamine, Serotonin and Androgenic Systems as Molecular Markers of Success in Judo Wrestling Sportsmen.

 J Bioanal Biomed (2013) .S3: 005. doi:10.4172/1948-593X.S3-005. 2.880

Astafieva AA, Rogozhin EA, Andreev YA, Odintsova TI, Kozlov SA, Grishin EV, Egorov TA.

A novel cysteine-rich antifungal peptide ToAMP4 from Taraxacum officinale Wigg. flowers.

 

Plant Physiol Biochem. 2013 Sep; 70:93-9

2.775
Minashkin MM, Salnikova LE, Lomonosov KM, Korobko IV, Tatarenko AO Possible contribution of GSTP1 and other xenobiotic metabolizing genes to vitiligo susceptibility. Arch Dermatol Res. 2013 Apr;305(3):233-9 2.708

Thompson TM, Sharfi D, Lee M, Yrigollen CM, Naumova OY, Grigorenko EL.

Comparison of whole-genome DNA methylation patterns in whole blood, saliva, and lymphoblastoid cell lines.

 

Behav Genet. 2013 Mar;43(2):168-76

2.606

Salnikova LE, Belopolskaya OB, Zelinskaya NI, Rubanovich AV.

The potential effect of gender in CYP1A1 and GSTM1 genotype-specific associations with pediatric brain tumor.

 

Tumour Biol. 2013 Oct 34(5):2709-19

2.518

Salnikova LE, Smelaya TV, Golubev AM, Rubanovich AV, Moroz VV.

CYP1A1, GCLC, AGT, AGTR1 gene-gene interactions in community-acquired pneumonia pulmonary complications.

 Mol Biol Rep. 2013 Sep 26. 2.506

Salnikova LE, Smelaya TV, Moroz VV, Golubev AM, Rubanovich AV.

Functional polymorphisms in the CYP1A1, ACE, and IL-6 genes contribute to susceptibility to community-acquired and nosocomial pneumonia.

 

Int J Infect Dis. 2013 Jun; 17(6):e433-42.

2.498

Bourmenskaya O, Shubina E, Trofimov D, Rebrikov D, Sabdulaeva E, Nepsha O, Bozhenko V, Rogovskaya S, Sukhikh G.

 

Host gene expression profiling of cervical smear is eligible for cancer risk evaluation.

J Clin Pathol. 2013 Apr; 66(4):282-5

2.439
Chhatre, V., Byram, T.  Neale D.B., Wegrzyn J.L., Krutovsky K.V. Genetic structure and association mapping of adaptive and selective traits in the East Texas loblolly pine (Pinus taeda L.) breeding populations. Tree Genetics and Genomes 2013 9(5): 1161-1178 2.397

Salnikova LE, Smelaya TV, Moroz VV, Golubev AM, Rubanovich AV.

 

Host genetic risk factors for community-acquired pneumonia.

Gene. 2013 Apr 15; 518(2):449-56.

2.196

Klimina KM, Kjasova DK, Poluektova EU, Krügel H, Leuschner Y, Saluz HP, Danilenko VN.

Identification and characterization of toxin-antitoxin systems in strains of Lactobacillus rhamnosus isolated from humans.

Anaerobe. 2013 Aug;22:82-9

2.022

Kulakovskiy IV, Makeev VJ.

DNA Sequence Motif: A Jack of All Trades for ChIP-Seq Data.

 

Adv Protein Chem Struct Biol. 2013; 91:135-71.

1.83

Tayeh A, Estoup A, Hufbauer RA, Ravigne V, Goryacheva I, Zakharov IA, Lombaert E, Facon B.

Investigating the genetic load of an emblematic invasive species: the case of the invasive harlequin ladybird Harmonia axyridis.

 

Ecol Evol. 2013 Apr; 3(4):864-71.

1.184

Vorontsov IE, Kulakovskiy IV, Makeev VJ.

Jaccard index based similarity measure to compare transcription factor binding site models.

Algorithms Mol Biol. 2013 Sep 30;8(1):23.

 1.61

Fertig E, Favorov A, Ochs M.

Identifying Context-Specific Transcription Factor Targets from Prior Knowledge and Gene Expression Data.

 

IEEE Trans Nanobioscience. 2013 May 16.

1.286
Krutovsky, K.V., Tretyakova I.N.,  Oreshkova N.V.,  Pak M.E., Kvitko O.V., and Vaganov E.A.

Somaclonal variation of haploid in vitro tissue culture obtained from Siberian larch (Larix sibirica Ledeb.) megagametophytes for whole genome de novo sequencing.

 

 In Vitro Cellular and Developmental Biology – Plant 2014 (in press) 1.139
Koralewski, T.E., Brooks, J.E. and Krutovsky K.V. Molecular evolution of drought tolerance and wood strength related candidate genes in loblolly pine (Pinus taeda L.)
 Silvae Genetica 2013 (in press) 0.44
Kulakovskiy I, Levitsky V, Oshchepkov D, Bryzgalov L, Vorontsov I, Makeev V.

From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites.

 J Bioinform Comput Biol. 2013 Feb; 11(1):1340004. The first impact factor will be available in 2013

Mukha DV, Pasyukova EG, Kapelinskaya TV, Kagramanova AS.

Endonuclease domain of the Drosophila melanogaster R2 non-LTR retrotransposon and related retroelements: a new model for transposition.

 

Front Genet. 2013 Apr 26;  4:63.

The first impact factor will be available in 2013

Lukiw WJ, Andreeva TV, Grigorenko AP, Rogaev EI.

Studying micro RNA Function and Dysfunction in Alzheimer's Disease.

 

Front Genet. 2013 Feb 6; 3:327.

The first impact factor will be available in 2013