Публикации

 

Показатели публикационной активности ИОГен по данным elibrary  и ФАНО

 

 

Публикации в журналах Science и Nature:

 

Nature. 2016; 538(7624):201-206.

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, Pääbo S, Kelso J, Patterson N, Reich D. - IF 38.138

 

Nature. 2016; 538(7624):238-242.

Genomic analyses inform on migration events during the peopling of Eurasia

Pagani L, Lawson DJ, Jagoda E, Mörseburg A, Eriksson A, Mitt M, Clemente F, Hudjashov G, DeGiorgio M, Saag L, Wall JD, Cardona A, Mägi R, Sayres MA, Kaewert S, Inchley C, Scheib CL, Järve M, Karmin M, Jacobs GS, Antao T, Iliescu FM, Kushniarevich A, Ayub Q, Tyler-Smith C, Xue Y, Yunusbayev B, Tambets K, Mallick CB, Saag L, Pocheshkhova E, Andriadze G, Muller C, Westaway MC, Lambert DM, Zoraqi G, Turdikulova S, Dalimova D, Sabitov Z, Sultana GN, Lachance J, Tishkoff S, Momynaliev K, Isakova J, Damba LD, Gubina M, Nymadawa P, Evseeva I, Atramentova L, Utevska O, Ricaut FX, Brucato N, Sudoyo H, Letellier T, Cox MP, Barashkov NA, Škaro V, Mulahasanovic L, Primorac D, Sahakyan H, Mormina M, Eichstaedt CA, Lichman DV, Abdullah S, Chaubey G, Wee JT, Mihailov E, Karunas A, Litvinov S, Khusainova R, Ekomasova N, Akhmetova V, Khidiyatova I, Marjanović D, Yepiskoposyan L, Behar DM, Balanovska E, Metspalu A, Derenko M, Malyarchuk B, Voevoda M, Fedorova SA, Osipova LP, Lahr MM, Gerbault P, Leavesley M, Migliano AB, Petraglia M, Balanovsky O, Khusnutdinova EK, Metspalu E, Thomas MG, Manica A, Nielsen R, Villems R, Willerslev E, Kivisild T, Metspalu M. - IF 38.138

 

Science. 2015 Aug 21;349(6250):aab3884.

Genomic evidence for the Pleistocene and recent population history of Native Americans.

Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, Cornejo OE, Moreno-Mayar JV, Korneliussen TS, Pierre T, Rasmussen M, Campos PF, Damgaard Pde B, Allentoft ME, Lindo J, Metspalu E, Rodríguez-Varela R, Mansilla J, Henrickson C, Seguin-Orlando A, Malmström H, Stafford T Jr, Shringarpure SS, Moreno-Estrada A, Karmin M, Tambets K, Bergström A, Xue Y, Warmuth V, Friend AD, Singarayer J, Valdes P, Balloux F, Leboreiro I, Vera JL, Rangel-Villalobos H, Pettener D, Luiselli D, Davis LG, Heyer E, Zollikofer CP, Ponce de León MS, Smith CI, Grimes V, Pike KA, Deal M, Fuller BT, Arriaza B, Standen V, Luz MF, Ricaut F, Guidon N, Osipova L, Voevoda MI, Posukh OL, Balanovsky O, Lavryashina M, Bogunov Y, Khusnutdinova E, Gubina M, Balanovska E, Fedorova S, Litvinov S, Malyarchuk B, Derenko M, Mosher MJ, Archer D, Cybulski J, Petzelt B, Mitchell J, Worl R, Norman PJ, Parham P, Kemp BM, Kivisild T, Tyler-Smith C, Sandhu MS, Crawford M, Villems R, Smith DG, Waters MR, Goebel T, Johnson JR, Malhi RS, Jakobsson M, Meltzer DJ, Manica A, Durbin R, Bustamante CD, Song YS, Nielsen R, Willerslev E. - IF 34.661

 

Science. 2015. 349(6250).

POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.

Raghavan M., Steinrücken M., Harris K., Schiffels S., Rasmussen S., DeGiorgio M., Albrechtsen A., Valdiosera C., Ávila-Arcos M.C., Malaspinas A.S., Eriksson A., Moltke I., Metspalu M., Homburger J.R., Wall J., Cornejo O.E., Moreno-Mayar J.V., Korneliussen T.S., Pierre T., Rasmussen M., Campos P.F., Damgaard P.B., Allentoft M.E., Lindo J., Metspalu E., Rodríguez-Varela R., Mansilla J., Henrickson C., Seguin-Orlando A., Malmström H., Stafford T.Jr., Shringarpure S., Moreno-Estrada A., Karmin M., Tambets K., Bergström A., Xue Y., Warmuth V., Friend A.D., Singarayer J., Valdes P., Balloux F., Leboreiro I., Vera J.L., Rangel-Villalobos H., Pettener D., Luiselli D., Davis L.G., Heyer E., Zollikofer C.P., Ponce de León M.S., Smith C.I., Grimes V., Pike K.A., Deal M., Fuller B.T., Arriaza B., Standen V., Luz M.F., Ricaut F., Guidon N., Osipova L., Voevoda M.I., Posukh O.L., Balanovsky O., Lavryashina M., Bogunov Y., Khusnutdinova E., Gubina M., Balanovska E., Fedorova S., Litvinov S., Malyarchuk B., Derenko M., Mosher M.J., Archer D., Cybulski J., Petzelt B., Mitchell J., Worl R., Norman P.J., Parham P., Kemp B.M., Kivisild T., Tyler-Smith C., Sandhu M.S., Crawford M., Villems R., Smith D.G., Waters M.R., Goebel T., Johnson J.R., Malhi R.S., Jakobsson M., Meltzer D.J., Manica A., Durbin R., Bustamante C.D., Song Y.S., Nielsen R., Willerslev E. - IF 34.661

 

Nature. 2014; 513(7518):409-13. – IF F 42.351

Ancient human genomes suggest three ancestral populations for present-day Europeans. //

Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, Nordenfelt S, Li H, de Filippo C, Prüfer K, Sawyer S, Posth C, Haak W, Hallgren F, Fornander E, Rohland N, Delsate D, Francken M, Guinet JM, Wahl J, Ayodo G, Babiker HA, Bailliet G, Balanovska E, Balanovsky O, Barrantes R, Bedoya G, Ben-Ami H, Bene J, Berrada F, Bravi CM, Brisighelli F, Busby GB, Cali F, Churnosov M, Cole DE, Corach D, Damba L, van Driem G, Dryomov S, Dugoujon JM, Fedorova SA, Gallego Romero I, Gubina M, Hammer M, Henn BM, Hervig T, Hodoglugil U, Jha AR, Karachanak-Yankova S, Khusainova R, Khusnutdinova E, Kittles R, Kivisild T, Klitz W, Kučinskas V, Kushniarevich A, Laredj L, Litvinov S, Loukidis T, Mahley RW, Melegh B, Metspalu E, Molina J, Mountain J, Näkkäläjärvi K, Nesheva D, Nyambo T, Osipova L, Parik J, Platonov F, Posukh O, Romano V, Rothhammer F, Rudan I, Ruizbakiev R, Sahakyan H, Sajantila A, Salas A, Starikovskaya EB, Tarekegn A, Toncheva D, Turdikulova S, Uktveryte I, Utevska O, Vasquez R, Villena M, Voevoda M, Winkler CA, Yepiskoposyan L, Zalloua P, Zemunik T, Cooper A, Capelli C, Thomas MG, Ruiz-Linares A, Tishkoff SA, Singh L, Thangaraj K, Villems R, Comas D, Sukernik R, Metspalu M, Meyer M, Eichler EE, Burger J, Slatkin M, Pääbo S, Kelso J, Reich D, Krause J.

 

Nature. 2014; 510(7503):109-14.

The ctenophore genome and the evolutionary origins of neural systems. //

Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB. – IF 42.351

 

Nature. 2014 Mar 27;507(7493):462-70.

A promoter-level mammalian expression atlas.

The FANTOM Consortium and the RIKEN PMI and CLST (DGT),  в том числе сотрудники ИОГен  Иван Кулаковский, Юлия Медведева, Александр Фаворов, Артем Касьянов, Илья Воронцов и Всеволод Макеев, Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Lassmann T, Itoh M, Summers KM, Suzuki H, Daub CO, Kawai J, Heutink P, Hide W, Freeman TC, Lenhard B, Bajic VB, Taylor MS, Makeev VJ, Sandelin A, Hume DA, Carninci P, Hayashizaki Y.  – IF 42.351

 

Избранные публикации 2014-2017 гг.

 

Hypermethylation of gene promoters in peripheral blood leukocytes in humans long term after radiation exposure.
Kuzmina NS, Lapteva NSh, Rubanovich AV.
Environ Res. 2016 Apr;146:10-7.  IF 4.400

 

Whole exome sequencing links dental tumor to an autosomal-dominant mutation in ANO5 gene associated with gnathodiaphyseal dysplasia and muscle dystrophies.
Andreeva TV, Tyazhelova TV, Rykalina VN, Gusev FE, Goltsov AY, Zolotareva OI, Aliseichik MP, Borodina TA, Grigorenko AP, Reshetov DA, Ginter EK, Amelina SS, Zinchenko RA, Rogaev EI.
Sci Rep. 2016 May 24;6:26440. IF 5.578

 

microRNA-34a-Mediated Down-Regulation of the Microglial-Enriched Triggering Receptor and Phagocytosis-Sensor TREM2 in Age-Related Macular Degeneration.
Bhattacharjee S, Zhao Y, Dua P, Rogaev EI, Lukiw WJ.
PLoS One. 2016 Mar 7;11(3):e0150211  IF 3.234

 

The evolution of Homo sapiens denisova and Homo sapiens neanderthalensis miRNA targeting genes in the prenatal and postnatal brain.
Gunbin KV, Afonnikov DA, Kolchanov NA, Derevianko AP, Rogaev EI.
BMC Genomics. 2015;16 Suppl 13:S4.  IF 3.986

 

Synthesis and antimycobacterial activity of N-(2-aminopurin-6-yl) and N-(purin-6-yl) amino acids and dipeptides.
Krasnov VP, Vigorov AY, Musiyak VV, Nizova IA, Gruzdev DA, Matveeva TV, Levit GL, Kravchenko MA, Skornyakov SN, Bekker OB, Danilenko VN, Charushin VN.
Bioorg Med Chem Lett. 2016 Jun 1;26(11):2645-8.  IF 2.420

 

Helen E. Roy, Peter M. J. Brown, Tim Adriaens, Nick Berkvens, Isabel Borges, Susana Clusella-Trullas, Richard F. Comont, Patrick De Clercq, Rene Eschen ,  Arnaud Estoup,  Edward W. Evans,  Benoit Facon,  Mary M. Gardiner,  Artur Gil,  Audrey A. Grez,  Thomas Guillemaud,  Danny Haelewaters,  Annette Herz,  Alois Honek,  Andy G. Howe,  Cang Hui,  William D. Hutchison,  Marc Kenis,  Robert L. Koch,  Jan Kulfan,  Lori Lawson Handley,  Eric Lombaert,  Antoon Loomans,  John Losey,  Alexander O. Lukashuk,  Dirk Maes,  Alexandra Magro,  Katie M. Murray,  Gilles San Martin,  Zdenka Martinkova,  Ingrid A. Minnaar,  Oldřich Nedved,  Marina J. Orlova-Bienkowskaja,  Naoya Osawa,  Wolfgang Rabitsch,  Hans Peter Ravn,  Gabriele Rondoni,  Steph L. Rorke,  Sergey K. Ryndevich,  May-Guri Saethre,  John J. Sloggett,  Antonio Onofre Soares,  Riaan Stals,  Matthew C. Tinsley,  Axel Vandereycken,  Paul van Wielink,  Sandra Viglášová,  Peter Zach, Ilya A. Zakharov, Tania Zaviezo,  Zihua Zhao. The harlequin ladybird, Harmonia axyridis: global perspectives on invasion history and ecology. Biol Invasions (2016) 18:997–1044. Impact Factor; 2.586.

 

Genomic evidence for the Pleistocene and recent population history of Native Americans. Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, Cornejo OE, Moreno-Mayar JV, Korneliussen TS, Pierre T, Rasmussen M, Campos PF, Damgaard Pde B, Allentoft ME, Lindo J, Metspalu E, Rodríguez-Varela R, Mansilla J, Henrickson C, Seguin-Orlando A, Malmström H, Stafford T Jr, Shringarpure SS, Moreno-Estrada A, Karmin M, Tambets K, Bergström A, Xue Y, Warmuth V, Friend AD, Singarayer J, Valdes P, Balloux F, Leboreiro I, Vera JL, Rangel-Villalobos H, Pettener D, Luiselli D, Davis LG, Heyer E, Zollikofer CP, Ponce de León MS, Smith CI, Grimes V, Pike KA, Deal M, Fuller BT, Arriaza B, Standen V, Luz MF, Ricaut F, Guidon N, Osipova L, Voevoda MI, Posukh OL, Balanovsky O, Lavryashina M, Bogunov Y, Khusnutdinova E, Gubina M, Balanovska E, Fedorova S, Litvinov S, Malyarchuk B, Derenko M, Mosher MJ, Archer D, Cybulski J, Petzelt B, Mitchell J, Worl R, Norman PJ, Parham P, Kemp BM, Kivisild T, Tyler-Smith C, Sandhu MS, Crawford M, Villems R, Smith DG, Waters MR, Goebel T, Johnson JR, Malhi RS, Jakobsson M, Meltzer DJ, Manica A, Durbin R, Bustamante CD, Song YS, Nielsen R, Willerslev E. //  Science. 2015 Aug 21;349(6250):aab3884.

 

Genetic Heritage of the Balto-Slavic Speaking Populations: A Synthesis of Autosomal, Mitochondrial and Y-Chromosomal Data. Kushniarevich A, Utevska O, Chuhryaeva M, Agdzhoyan A, Dibirova K, Uktveryte I, Möls M, Mulahasanovic L, Pshenichnov A, Frolova S, Shanko A, Metspalu E, Reidla M, Tambets K, Tamm E, Koshel S, Zaporozhchenko V, Atramentova L, Kučinskas V, Davydenko O, Goncharova O, Evseeva I, Churnosov M, Pocheshchova E, Yunusbayev B, Khusnutdinova E, Marjanović D, Rudan P, Rootsi S, Yankovsky N, Endicott P, Kassian A, Dybo A; Genographic Consortium, Tyler-Smith C, Balanovska E, Metspalu M, Kivisild T, Villems R, Balanovsky O. // PLoS One. 2015 Sep 2;10(9):e0135820

 

Genome-wide signatures of male-mediated migration shaping the Indian gene pool. ArunKumar G, Tatarinova TV, Duty J, Rollo D, Syama A, Arun VS, Kavitha VJ, Triska P, Greenspan B, Wells RS, Pitchappan R; Genographic Consortium. // J Hum Genet. 2015 May 21. doi: 10.1038/jhg.2015.51.

 

The genetic legacy of the expansion of Turkic-speaking nomads across Eurasia. Yunusbayev B, Metspalu M, Metspalu E, Valeev A, Litvinov S, Valiev R, Akhmetova V, Balanovska E, Balanovsky O, Turdikulova S, Dalimova D, Nymadawa P, Bahmanimehr A, Sahakyan H, Tambets K, Fedorova S, Barashkov N, Khidiyatova I, Mihailov E, Khusainova R, Damba L, Derenko M, Malyarchuk B, Osipova L, Voevoda M, Yepiskoposyan L, Kivisild T, Khusnutdinova E, Villems R. // PLoS Genet. 2015 Apr 21;11(4):e1005068. doi: 10.1371/journal.pgen.1005068. eCollection 2015 Apr.

 

Deep phylogenetic analysis of haplogroup G1 provides estimates of SNP and STR mutation rates on the human Y-chromosome and reveals migrations of Iranic speakers. Balanovsky O, Zhabagin M, Agdzhoyan A, Chukhryaeva M, Zaporozhchenko V, Utevska O, Highnam G, Sabitov Z, Greenspan E, Dibirova K, Skhalyakho R, Kuznetsova M, Koshel S, Yusupov Y, Nymadawa P, Zhumadilov Z, Pocheshkhova E, Haber M, A Zalloua P, Yepiskoposyan L, Dybo A, Tyler-Smith C, Balanovska E. //  PLoS One. 2015 Apr 7;10(4):e0122968.

 

A recent bottleneck of Y chromosome diversity coincides with a global change in culture. Karmin M, Saag L, Vicente M, Wilson Sayres MA, Järve M, Talas UG, Rootsi S, Ilumäe AM, Mägi R, Mitt M, Pagani L, Puurand T, Faltyskova Z, Clemente F, Cardona A, Metspalu E, Sahakyan H, Yunusbayev B, Hudjashov G, DeGiorgio M, Loogväli EL, Eichstaedt C, Eelmets M, Chaubey G, Tambets K, Litvinov S, Mormina M, Xue Y, Ayub Q, Zoraqi G, Korneliussen TS, Akhatova F, Lachance J, Tishkoff S, Momynaliev K, Ricaut FX, Kusuma P, Razafindrazaka H, Pierron D, Cox MP, Sultana GN, Willerslev R, Muller C, Westaway M, Lambert D, Skaro V, Kovačevic L, Turdikulova S, Dalimova D, Khusainova R, Trofimova N, Akhmetova V, Khidiyatova I, Lichman DV, Isakova J, Pocheshkhova E, Sabitov Z, Barashkov NA, Nymadawa P, Mihailov E, Seng JW, Evseeva I, Migliano AB, Abdullah S, Andriadze G, Primorac D, Atramentova L, Utevska O, Yepiskoposyan L, Marjanovic D, Kushniarevich A, Behar DM, Gilissen C, Vissers L, Veltman JA, Balanovska E, Derenko M, Malyarchuk B, Metspalu A, Fedorova S, Eriksson A, Manica A, Mendez FL, Karafet TM, Veeramah KR, Bradman N, Hammer MF, Osipova LP, Balanovsky O, Khusnutdinova EK, Johnsen K, Remm M, Thomas MG, Tyler-Smith C, Underhill PA, Willerslev E, Nielsen R, Metspalu M, Villems R, Kivisild T.  //  Genome Res. 2015 Apr;25(4):459-66.

 

Diacylglyceryltrimethylhomoserine content and gene expression changes triggered by phosphate deprivation in the mycelium of the basidiomycete Flammulina velutipes. Senik SV, Maloshenok LG, Kotlova ER, Shavarda AL, Moiseenko KV, Bruskin SA, Koroleva OV, Psurtseva NV. // Phytochemistry. 2015 Sep;117:34-42.

 

Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal. Papatsenko D, Darr H, Kulakovskiy IV, Waghray A, Makeev VJ, MacArthur BD, Lemischka IR. //  Stem Cell Reports. 2015 Aug 11;5(2):207-20.

 

Phenomenon of individual difference in human monocyte activation. Orekhov AN, Nikiforov NG, Elizova NV, Ivanova EA, Makeev VJ. // Exp Mol Pathol. 2015 Aug;99(1):151-4.

 

Protasova MS, Grigorenko AP, Tyazhelova TV, Andreeva TV, Reshetov DA, Gusev FE, Laptenko AE, Kuznetsova IL, Goltsov AY, Klyushnikov SA, Illarioshkin SN, Rogaev EI. Whole-genome sequencing identifies a novel ABCB7 gene mutation for X-linked congenital cerebellar ataxia in a large family of Mongolian ancestry. // Eur J Hum Genet. 2015 Aug 5. doi: 10.1038/ejhg.2015.139.

 

Shepelev VA, Uralsky LI, Alexandrov AA, Yurov YB, Rogaev EI, Alexandrov IA.  Annotation of suprachromosomal families reveals uncommon types of alpha satellite organization in pericentromeric regions of hg38 human genome assembly. // Genom Data. 2015 Sep 1;5:139-146.

 

Bai G, Cheung I, Shulha HP, Coelho JE, Li P, Dong X, Jakovcevski M, Wang Y, Grigorenko A, Jiang Y, Hoss A, Patel K, Zheng M, Rogaev E, Myers RH, Weng Z, Akbarian S, Chen JF.  Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains. // Hum Mol Genet. 2015 Mar 1;24(5):1441-56.

 

Rykalina VN, Shadrin AA, Amstislavskiy VS, Rogaev EI, Lehrach H, Borodina TA. Exome sequencing from nanogram amounts of starting DNA: comparing three approaches. // vPLoS One. 2014 Jul 3;9(7):e101154.

 

Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes. Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN. Microb Ecol. 2015 Apr 17. [Epub ahead of print]

 

Discovery of molecular markers to discriminate corneal endothelial cells in the human body. Yoshihara M, Ohmiya H, Hara S, Kawasaki S; FANTOM consortium (Makeev V et al.), Hayashizaki Y, Itoh M, Kawaji H, Tsujikawa M, Nishida K. PLoS One. 2015 Mar 25;10(3):e0117581.

The statistical geometry of transcriptome divergence in cell-type evolution and cancer. Liang C; FANTOM Consortium (Makeev V et al.) , Forrest AR, Wagner GP. // Nat Commun. 2015 Jan 14;6:6066.

Effects of genetic drift in a small population of Atlantic cod (Gadus morhua kildinensis Derjugin) landlocked in a meromictic lake: genetic variation and conservation measures.  Zhivotovsky, L. A., Teterina, A. A., Mukhina, N. V., Stroganov, A. N., Rubtsova, G. A., & Afanasiev, K. I. // Conservation Genetics, 1-10.  DOI: 10.1007/s10592-015-0774-5

 

Efficiency of the inbreeding coefficient f and other estimators in detecting null alleles, as revealed by empirical data of locus oke3 across 65 populations of chum salmon Oncorhynchus keta. Zhivotovsky LA, Kordicheva SY, Shaikhaev EG, Rubtsova GA, Afanasiev KI, Shitova MV, Fuller SA, Shaikhaev GO, Gharrett AJ.// J Fish Biol. 2015 Jan;86(1):402-8

 

Functional analysis of the type II toxin-antitoxin systems of the MazEF and RelBE families in Bifidobacterium longum subsp. infantis ATCC 15697. Averina O, Alekseeva M, Shkoporov A, Danilenko V. // Anaerobe. 2015 Jul 23;35(Pt B):59-67.

 

Draft Genome Sequences of Two Pyrazinamide-Resistant Clinical Isolates, Mycobacterium tuberculosis 13-4152 and 13-2459. Maslov DA, Shur KV, Bekker OB, Zakharevich NV, Zaichikova MV, Klimina KM, Smirnova TG, Zhang Y, Chernousova LN, Danilenko VN. // Genome Announc. 2015 Jul 2;3(4). pii: e00758-15.

 

Draft Genome Sequences of Bifidobacterium angulatum GT102 and Bifidobacterium adolescentis 150: Focusing on the Genes Potentially Involved in the Gut-Brain Axis. Dyachkova MS, Klimina KM, Kovtun AS, Zakharevich NV, Nezametdinova VZ, Averina OV, Danilenko VN. //  Genome Announc. 2015 Jul 2;3(4). pii: e00709-15.

 

Resistance to pyrazinamide in Russian Mycobacterium tuberculosis isolates: pncA sequencing versus Bactec MGIT 960. Maslov DA, Zaĭchikova MV, Chernousova LN, Shur KV, Bekker OB, Smirnova TG, Larionova EE, Andreevskaya SN, Zhang Y, Danilenko VN. // Tuberculosis (Edinb). 2015 Sep;95(5):608-12.

 

Draft Genome Sequence of Mycobacterium tuberculosis Strain E186hv of Beijing B0/W Lineage with Reduced Virulence. Shur KV, Klimina KM, Zakharevich NV, Maslov DA, Bekker OB, Zaychikova MV, Kamaev EY, Kravchenko MA, Skornyakov SN, Zhang Y, Danilenko VN. // Genome Announc. 2015 May 7;3(3). pii: e00403-15.

 

Draft Genome Sequences of Lactobacillus plantarum Strain 90sk and Lactobacillus brevis Strain 15f: Focusing on Neurotransmitter Genes. Yunes RA, Klimina KM, Emelyanov KV, Zakharevich NV, Poluektova EU, Danilenko VN. // Genome Announc. 2015 Apr 16;3(2). pii: e00261-15.

 

Expression of the toxin-antitoxin genes yefMLrh , yoeBLrh in human Lactobacillus rhamnosus isolates. Krügel H, Klimina KM, Mrotzek G, Tretyakov A, Schöfl G, Saluz HP, Brantl S, Poluektova EU, Danilenko VN. // J Basic Microbiol. 2015 Aug;55(8):982-91.

 

FoF1-ATP synthase of Streptomyces fradiae ATCC 19609: structural, biochemical, and functional characterization. Alekseeva MG, Mironcheva TA, Mavletova DA, Elizarov SM, Zakharevich NV, Danilenko VN. // Biochemistry (Mosc). 2015 Mar;80(3):296-309

 

The association of PLA2G2A single nucleotide polymorphisms with type IIa secretory phospholipase A2 level but not its activity in patients with stable coronary heart disease. Shuvalova YA, Khasanova ZB, Kaminnaya VI, Samoilova EV, Korotaeva AA, Rubanovich AV, Kaminnyi AI. //  Gene. 2015 Jun 10;564(1):29-34.  IF 2.082

 

Verification of the Chromosome Region 9q21 Association with Pelvic Organ Prolapse Using RegulomeDB Annotations. Khadzhieva MB, Kolobkov DS, Kamoeva SV, Ivanova AV, Abilev SK, Salnikova LE. // Biomed Res Int. 2015;2015:837904.

 

Germline and somatic genetic predictors of pathological response in neoadjuvant settings of rectal and esophageal cancers: systematic review and meta-analysis. Salnikova LE, Kolobkov DS.// Pharmacogenomics J. 2015 Jun 30.

 

Association of the apolipoprotein E 2 allele with concurrent occurrence of endometrial hyperplasia and endometrial carcinoma. Ivanova TI, Krikunova LI, Ryabchenko NI, Mkrtchyan LS, Khorokhorina VA, Salnikova LE. // Oxid Med Cell Longev. 2015;2015:593658.

 

Clinical associations of host genetic variations in the genes of cytokines in critically ill patients. Belopolskaya OB, Smelaya TV, Moroz VV, Golubev AM, Salnikova LE. // Clin Exp Immunol. 2015 Jun;180(3):531-41.

 

Poliakov, E., Cooper, D. N., Stepchenkova, E. I., & Rogozin, I. B. (2015). Genetics in Genomic Era. Genetics research international. dx.doi.org/10.1155/2015/364960

 

 

Badaeva, E. D., Keilwagen, J., Knüpffer, H., Waßermann, L., Dedkova, O. S., Mitrofanova, O. P., ... & Kilian, B. (2015). Chromosomal Passports Provide New Insights into Diffusion of Emmer Wheat. PloS one, 10(5), e0128556.

 

Prepubertal Serum Concentrations of Organochlorine Pesticides and Age at Sexual Maturity in Russian Boys. Lam T, Williams PL, Lee MM, Korrick SA, Birnbaum LS, Burns JS, Sergeyev O, Revich B, Altshul LM, Patterson DG Jr, Hauser R. // Environ Health Perspect. 2015 May 22

 

 

 

Zhivotovsky L.A. Relationships Between Wright’s FST and FISStatistics in a Context of Wahlund Effect // J. Hered. 2015 (published online 17/04/2015)   - IF 1.969


A.V., E.V.,

Dasgupta M.G., Dharanishanthi V., Agarwal I., Krutovsky K.V.Development of genetic markers in Eucalyptus species by target enrichment and exome sequencing // PLoS One. 2015.10(1): e0116528. doi:10.1371/journal.pone.011652 (http://www.plosone.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pone.0116528&representation=PDF)

 

Bogomazova AN, Vassina EM, Goryachkovskaya TN, Popik VM, Sokolov AS, Kolchanov NA, Lagarkova MA, Kiselev SL, Peltek SE. No DNA damage response and negligible genome-wide transcriptional changes in human embryonic stem cells exposed to terahertz radiation. Sci Rep. 2015  Jan 13;5:7749. doi: 10.1038/srep07749

 

Bogomazova AN, Lagarkova MA, Panova AV, Nekrasov ED, Kiselev SL. Reactivation of Х chromosome upon reprogramming leads to changes in the replication pattern and 5hmC accumulation. Chromosoma. 2014 Mar;123(1-2):117-28

 

Rykalina VN, Shadrin AA, Amstislavskiy VS, Rogaev EI, Lehrach H, Borodina TA. Exome sequencing from nanogram amounts of starting DNA: comparing three approaches. PLoS One. 2014 Jul 3;9(7):e101154

 

Bai G, Cheung I, Shulha HP, Coelho JE, Li P, Dong X, Jakovcevski M, Wang Y, Grigorenko A, Jiang Y, Hoss A, Patel K, Zheng M, Rogaev E, Myers RH, Weng Z, Akbarian S, Chen JF.  Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains. Hum Mol Genet. 2014 Dec 5. pii: ddu561.

 

Veytsman B, Wang L, Cui T, Bruskin S, Baranova A. Distance-based classifiers as potential diagnostic and prediction tools for human diseases. BMC Genomics. 2014 Dec 19;15 Suppl 12:S10.

 

Pogorelko GV, Mokryakova M, Fursova OV, Abdeeva I, Piruzian ES, Bruskin SA. Characterization of three Arabidopsis thaliana immunophilin genes involved in the plant defense response against Pseudomonas syringae. Gene. 2014 Mar 15;538(1):12-22.

 

Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. Gene. 2014 Apr 25;540(1):1-10.

 

Khadzhieva MB, Kamoeva SV, Chumachenko AG, Ivanova AV, Volodin IV, Vladimirov IS, Abilev SK, Salnikova LE. Fibulin-5 (FBLN5) gene polymorphism is associated with pelvic organ prolapse. Maturitas. 2014 Aug;78(4):287-92

 

Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN. Complete Genome Sequence of Bifidobacterium longum GT15: Unique Genes for Russian Strains. Genome Announc. 2014 Dec 18;2(6).

 

Bekker OB, Klimina KM, Vatlin AA, Zakharevich NV, Kasianov AS, Danilenko VN. Draft Genome Sequence of Streptomyces fradiae ATCC 19609, a Strain Highly Sensitive to Antibiotics. Genome Announc. 2014 Dec 4;2(6).

 

Lysenkova LN, Turchin KF, Korolev AM, Danilenko VN, Bekker OB, Dezhenkova LG, Shtil AA, Preobrazhenskaya MN.  Study on retroaldol degradation products of antibiotic oligomycin A. J Antibiot (Tokyo). 2014 Feb;67(2):153-8

 

Knappskog S, Gansmo LB, Dibirova K, Metspalu A, Cybulski C, Peterlongo P, Aaltonen L, Vatten L, Romundstad P, Hveem K, Devilee P, Evans GD, Lin D, Van Camp G, Manolopoulos VG, Osorio A, Milani L, Ozcelik T, Zalloua P, Mouzaya F, Bliznetz E, Balanovska E, Pocheshkova E, Kučinskas V, Atramentova L, Nymadawa P, Titov K, Lavryashina M, Yusupov Y, Bogdanova N, Koshel S, Zamora J, Wedge DC, Charlesworth D, Dörk T, Balanovsky O, Lønning PE. Population distribution and ancestry of the cancer protective MDM2 SNP285 (rs117039649). Oncotarget. 2014 Sep 30;5(18):8223-34.

 

Krutovsky K.V., Tretyakova I.N., Oreshkova N.V., Pak M.E., Kvitko O.V., Vaganov E.A. Somaclonal variation of haploid in vitro tissue culture obtained from Siberian larch (Larix sibiricaLedeb.) megagametophytes for whole genome de novosequencing // In Vitro Cellular and Developmental Biology – Plant. 2014. V. 50. № 5. P. 655-664.

 

Koralewski, T.E., Brooks, J.E. and K.V. Krutovsky. Molecular evolution of drought tolerance and wood strength related candidate genes in loblolly pine (Pinus taeda L.) // Silvae Genetica. 2014. V. 63. № 1-2. P. 59-66.

 

Zhivotovsky L.A., S.Yu. Kordicheva, E.G. Shaikhaev, G.A. Rubtsova, K.I. Afanasiev, M.V. Shitova, S.A. Fuller, G.O. Shaikhaev, A.J. Gharrett. 2014. Efficiency of the inbreeding coefficient f and other estimators in detecting null alleles, as revealed by empirical data of locus Oke3 across 65 populations of chum salmon, Oncorhynchus ketaJournal of Fish Biology (doi: 10.1111/jfb.12568)  - IF 1.734


Zhivotovsky L.A., A.A. Yurchenko, V.D. Nikitin, S.N. Safronov, M.V. Shitova, S.F. Zolotukhin, S.S. Makeev, S. Weiss, P.S. Rand, A.Yu. Semenchenko. 2014. Eco-geographic units, population hierarchy, and a two-level conservation strategy with reference to a critically endangered salmonid, Sakhalin taimen Parahucho perryi. Conservation Genetics (doi: 10.1007/s10592-014-0670-4) - IF 1.846

 

Pavlova G.V., Vergun A.A., Rybalkina E.Yu., Butovskaya P.R. , Ryskov A.P. Identification of Structural DNA Variations in Human Cell Cultures after Long-Term Passage.// Cell Cycle. 2015, Vol.14, Issue 1, doi. org/10.4161/15384101.2014.974427. IF 5.0

 

Slavokhotova AA, Rogozhin EA, Musolyamov AK, Andreev YA, Oparin PB, Berkut AA, Vassilevski AA, Egorov TA, Grishin EV, Odintsova TI. Novel antifungal α-hairpinin peptide from Stellaria media seeds: structure, biosynthesis, gene structure and evolution. Plant Mol Biol. 2014. V. 84(1-2). P. 189-202. IF 4.072

 

Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Structure of the yellow sac spider Cheiracanthium punctorium genes provides clues to evolution of insecticidal two-domain knottin toxins. Insect Mol Biol. 2014. V. 23(4). P. 527-38. IF 2.976

 

Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Genes and evolution of two-domain toxins from lynx spider venom. FEBS Lett. 2014. V. 588(5). P. 740-5. IF 3.341

 

Berkut AA, Usmanova DR, Peigneur S, Oparin PB, Mineev KS, Odintsova TI, Tytgat J, Arseniev AS, Grishin EV, Vassilevski AA. Structural Similarity between Defense Peptide from Wheat and Scorpion Neurotoxin Permits Rational Functional Design. J Biol Chem. 2014. V. 289(20). P. 14331-40. IF 4.6

 

Slavokhotova AA, Naumann TA, Price NP, Rogozhin EA, Andreev YA, Vassilevski AA, Odintsova TI. Novel mode of action in plant defense peptides: hevein-like antimicrobial peptides from wheat inhibit fungal metalloproteases. FEBS J. 2014. V. 281(20). P. 4754-64. IF 3.986

 

Zvyagin I.V. ,   Pogorelyy M.V., Ivanova M. E. , Komech M. E. , Shugay M. , Bolotin D.A. , Shelenkov A.A., Kurnosov A.A. ,  Staroverov D.B. , Chudakov D.M. , Lebedev Y.B., Mamedov  I.Z. Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing. PNAS, 2014, 111(16):5980-5, doi: 10.1073/pnas.1319389111 - IF 9.809  (лаб. функциональной геномики)

 

Ignatov KB, Barsova EV, Fradkov AF, Blagodatskikh KA, Kramarova TV, Kramarov VM. A strong strand displacement activity of thermostable DNA polymerase markedly improves the results of DNA amplification. Biotechniques. 2014 Aug 1;57(2):81-7. IF - 2.754 (лаб. анализа генома)

Статья поставлена журналом Biotechniques на первое место в обзоре достижений в области ПЦР за 2014 год BioTechniques - PCR: 2014 Year in Review

 

Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, Nordenfelt S, Li H, de Filippo C, Prüfer K, Sawyer S, Posth C, Haak W, Hallgren F, Fornander E, Rohland N, Delsate D, Francken M, Guinet JM, Wahl J, Ayodo G, Babiker HA, Bailliet G, Balanovska E, Balanovsky O, Barrantes R, Bedoya G, Ben-Ami H, Bene J, Berrada F, Bravi CM, Brisighelli F, Busby GB, Cali F, Churnosov M, Cole DE, Corach D, Damba L, van Driem G, Dryomov S, Dugoujon JM, Fedorova SA, Gallego Romero I, Gubina M, Hammer M, Henn BM, Hervig T, Hodoglugil U, Jha AR, Karachanak-Yankova S, Khusainova R, Khusnutdinova E, Kittles R, Kivisild T, Klitz W, Kučinskas V, Kushniarevich A, Laredj L, Litvinov S, Loukidis T, Mahley RW, Melegh B, Metspalu E, Molina J, Mountain J, Näkkäläjärvi K, Nesheva D, Nyambo T, Osipova L, Parik J, Platonov F, Posukh O, Romano V, Rothhammer F, Rudan I, Ruizbakiev R, Sahakyan H, Sajantila A, Salas A, Starikovskaya EB, Tarekegn A, Toncheva D, Turdikulova S, Uktveryte I, Utevska O, Vasquez R, Villena M, Voevoda M, Winkler CA, Yepiskoposyan L, Zalloua P, Zemunik T, Cooper A, Capelli C, Thomas MG, Ruiz-Linares A, Tishkoff SA, Singh L, Thangaraj K, Villems R, Comas D, Sukernik R, Metspalu M, Meyer M, Eichler EE, Burger J, Slatkin M, Pääbo S, Kelso J, Reich D, Krause J. Ancient human genomes suggest three ancestral populations for present-day Europeans. // Nature. 2014 Sep 18;513(7518):409-13. doi: 10.1038/nature13673. – IF F 42.351

 

Association between alcohol and cardiovascular disease: Mendelian randomisation analysis based on individual participant data.

Holmes MV, Dale CE, Zuccolo L, Silverwood RJ, Guo Y, Ye Z, Prieto-Merino D, Dehghan A, Trompet S, Wong A, Cavadino A, Drogan D, Padmanabhan S, Li S, Yesupriya A, Leusink M, Sundstrom J, Hubacek JA, Pikhart H, Swerdlow DI, Panayiotou AG, Borinskaya SA, Finan C, Shah S, Kuchenbaecker KB, Shah T, Engmann J, Folkersen L, Eriksson P, Ricceri F, Melander O, Sacerdote C, Gamble DM, Rayaprolu S, Ross OA, McLachlan S, Vikhireva O, Sluijs I, Scott RA, Adamkova V, Flicker L, Bockxmeer FM, Power C, Marques-Vidal P, Meade T, Marmot MG, Ferro JM, Paulos-Pinheiro S, Humphries SE, Talmud PJ, Mateo Leach I, Verweij N, Linneberg A, Skaaby T, Doevendans PA, Cramer MJ, Harst Pv, Klungel OH, Dowling NF, Dominiczak AF, Kumari M, Nicolaides AN, Weikert C, Boeing H, Ebrahim S, Gaunt TR, Price JF, Lannfelt L, Peasey A, Kubinova R, Pajak A, Malyutina S, Voevoda MI, Tamosiunas A, Maitland-van der Zee AH, Norman PE, Hankey GJ, Bergmann MM, Hofman A, Franco OH, Cooper J, Palmen J, Spiering W, Jong PA, Kuh D, Hardy R, Uitterlinden AG, Ikram MA, Ford I, Hyppönen E, Almeida OP, Wareham NJ, Khaw KT, Hamsten A, Husemoen LL, Tjønneland A, Tolstrup JS, Rimm E, Beulens JW, Verschuren WM, Onland-Moret NC, Hofker MH, Wannamethee SG, Whincup PH, Morris R, Vicente AM, Watkins H, Farrall M, Jukema JW, Meschia J, Cupples LA, Sharp SJ, Fornage M, Kooperberg C, LaCroix AZ, Dai JY, Lanktree MB, Siscovick DS, Jorgenson E, Spring B, Coresh J, Li YR, Buxbaum SG, Schreiner PJ, Ellison RC, Tsai MY, Patel SR, Redline S, Johnson AD, Hoogeveen RC, Hakonarson H, Rotter JI, Boerwinkle E, Bakker PI, Kivimaki M, Asselbergs FW, Sattar N, Lawlor DA, Whittaker J, Davey Smith G, Mukamal K, Psaty BM, Wilson JG, Lange LA, Hamidovic A, Hingorani AD, Nordestgaard BG, Bobak M, Leon DA, Langenberg C, Palmer TM, Reiner AP, Keating BJ, Dudbridge F, Casas JP; InterAct Consortium.  Association between alcohol and cardiovascular disease: Mendelian randomisation analysis based on individual participant data //  BMJ. 2014 Jul 10;349:g4164. doi: 10.1136/bmj.g4164. Free Full Text – IF 16.378
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Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB. The ctenophore genome and the evolutionary origins of neural systems. // Nature. 2014 Jun 5;510(7503):109-14. – IF 42.351   ПРЕСС-РЕЛИЗ

 

Geographic population structure analysis of worldwide human populations infers their biogeographical origins.

Elhaik E, Tatarinova T, Chebotarev D, Piras IS, Maria Calò C, De Montis A, Atzori M, Marini M, Tofanelli S, Francalacci P, Pagani L, Tyler-Smith C, Xue Y, Cucca F, Schurr TG, Gaieski JB, Melendez C, Vilar MG, Owings AC, Gómez R, Fujita R, Santos FR, Comas D, Balanovsky O, Balanovska E, Zalloua P, Soodyall H, Pitchappan R, Ganeshprasad A, Hammer M, Matisoo-Smith L, Wells RS; Genographic Consortium.  // Nat Commun. 2014 Apr 29;5:3513. doi: 10.1038/ncomms4513.  - IF 10.742

 

FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Lassmann T, Itoh M, Summers KM, Suzuki H, Daub CO, Kawai J, Heutink P, Hide W, Freeman TC, Lenhard B, Bajic VB, Taylor MS, Makeev VJ, Sandelin A, Hume DA, Carninci P, Hayashizaki Y.  A promoter-level mammalian expression atlas. // Nature. 2014 Mar 27;507(7493):462-70. doi: 10.1038/nature13182. – IF 42.351   ПРЕСС-РЕЛИЗ

 

Salnikova L.E. Clinicopathologic Characteristics of Brain Tumors Are Associated with the Presence and Patterns of TP53 Mutations: Evidence from the IARC TP53 Database. // Neuromolecular Med. 2014 Jan 31. [Epub ahead of print] DOI: 10.1007/s12017-014-8290-1 – IF 4.492

 

Salnikova LE, Smelaya TV, Vesnina IN, Golubev AM, Moroz VV. Genetic Susceptibility to Nosocomial Pneumonia, Acute Respiratory Distress Syndrome and Poor Outcome in Patients at Risk of Critical Illness. // Inflammation  2014; 37(2):295-305. DOI: 10.1007/s10753-013-9740-x – IF 2.457

 

Khadzhieva MB, Lutcenko NN, Volodin IV, Morozova KV, Salnikova LE. Association of Oxidative Stress Related Genes with Idiopathic Recurrent Miscarriage. // Free Radical Research. 2014;48(5):534-541. DOI:10.3109/10715762.2014.891735 – IF 3.279

 

The FANTOM Consortium and the RIKEN PMI and CLST (DGT),   в том числе сотрудники ИОГен  Иван Кулаковский, Юлия Медведева, Александр Фаворов, Артем Касьянов, Илья Воронцов и Всеволод Макеев:   A promoter-level mammalian expression atlas // Nature 507, 462–470  (27 March 2014)  -- IF F 42.351

 

Lomakin YA, Zakharova MY, Stepanov AV, Dronina MA, Smirnov IV, Bobik TV, Pyrkov AY, Tikunova NV, Sharanova SN, Boitsov VM, Vyazmin SY, Kabilov MR, Tupikin AE, Krasnov AN, Bykova NA, Medvedeva YA, Fridman MV, Favorov AV, Ponomarenko NA, Dubina MV, Boyko AN, Vlassov VV, Belogurov Jr AA, Gabibov AG.  Heavy-light chain interrelations of MS-associated immunoglobulins probed by deep sequencing and rational variation.// Mol Immunol. 2014 Feb 14. pii: S0161-5890(14)00023-6. doi: 10.1016/j.molimm.2014.01.013 -- IF 2.645

 

Medvedeva YA, Khamis AM, Kulakovskiy IV, Ba-Alawi W, Bhuyan MS, Kawaji H, Lassmann T, Harbers M, Forrest AR, Bajic VB; FANTOM consortium. Effects of cytosine methylation on transcription factor binding sites. // BMC Genomics. 2014 Mar 26;15(1):119. doi: 10.1186/1471-2164-15-119. -- IF 4.40

 

Levitsky VG, Kulakovskiy IV, Ershov NI, Oschepkov DY, Makeev VJ, Hodgman TC, Merkulova TI. Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data. BMC Genomics. 2014 Jan 29;15(1):80. -- IF 4.40

 

Underhill PA, Poznik GD, Rootsi S, Järve M, Lin AA, Wang J, Passarelli B, Kanbar J, Myres NM, King RJ, Di Cristofaro J, Sahakyan H, Behar DM, Kushniarevich A, Sarac J, Saric T, Rudan P, Pathak AK, Chaubey G, Grugni V, Semino O, Yepiskoposyan L, Bahmanimehr A, Farjadian S, Balanovsky O, Khusnutdinova EK, Herrera RJ, Chiaroni J, Bustamante CD, Quake SR, Kivisild T, Villems R. The phylogenetic and geographic structure of Y-chromosome haplogroup R1a. // Eur J Hum Genet. 2014 Mar 26. doi: 10.1038/ejhg.2014.50  -- IF 4.319

 

Gogleva AA, Gelfand MS, Artamonova II. Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs. // BMC Genomics. 2014 Mar 17;15:202. IF -  4.041

 

Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. // Gene. 2014 ;540(1):1-10. doi: 10.1016/j.gene.2014.01.068 -- IF 2.341

 

Nezametdinova V.Z., Zakharevich N.V., Alekseeva M.G., Mavletova D.A., Averina O.A., Danilenko V.N. Identification and characterization of the eukaryote-like serine/threonine protein kinases in Bifidobacterium. Archives of Microbiology.  2014, V. 196, Issue 2, pp 125-136. --  IF 1.905

 

Thompson PM, Stein JL, Medland SE, Hibar DP, Vasquez AA, Renteria ME, Toro R, Jahanshad N, Schumann G, Franke B,Wright MJ, Martin NG, Agartz I, Alda M, Alhusaini S, Almasy L, Almeida J, Alpert K, Andreasen NC, Andreassen OA, Apostolova LG, Appel K, Armstrong NJ, Aribisala B, Bastin ME, Bauer M, Bearden CE, Bergmann O, Binder EB, Blangero J, Bockholt HJ,Bøen E, Bois C, Boomsma DI, Booth T, Bowman IJ, Bralten J, Brouwer RM, Brunner HG, Brohawn DG, Buckner RL, Buitelaar J,Bulayeva K. et al. (2014). The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging and Behavior, Online First : 1-30.  -- IF 2.667

 

Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Genes and evolution of two-domain toxins from lynx spider venom. FEBS Lett. 2014 Jan 23. pii: S0014-5793(14)00044-1.  doi: 10.1016/j.febslet.2014.01.018. -- 3.582


Slavokhotova AA, Rogozhin EA, Musolyamov AK, Andreev YA, Oparin PB, Berkut AA, Vassilevski AA, Egorov TA, Grishin EV, Odintsova TI. Novel antifungal α-hairpinin peptide from Stellaria media seeds: structure, biosynthesis, gene structure and evolution. Plant Mol Biol. 2014 Jan; 84(1-2):189-202.  doi: 10.1007/s11103-013-0127-z.  --  IF 3.518

 

Evsyukov A., Ivanov D. Seection variability for Arg48His in Alcohol Dehydrogenase ADH1B among Asian populations. Human Biology. 2013. Vol. 85. Issue 4. P. 569-578. --  IF  1.522

 

Der Sarkissian C, Brotherton P, Balanovsky O, Templeton JE, Llamas B, Soubrier J, Moiseyev V, Khartanovich V, Cooper A, Haak W; Genographic Consortium. Mitochondrial genome sequencing in Mesolithic North East Europe Unearths a new sub-clade within the broadly distributed human haplogroup C1. // PLoS One. 2014 Feb 4;9(2):e87612. -- IF  3.730

 

Clarke AC, Prost S, Stanton JA, White WT, Kaplan ME, Matisoo-Smith EA; Genographic Consortium (Balanovsky OP). From cheek swabs to consensus sequences: an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes. // BMC Genomics. 2014 Jan 25;15:68 -- IF 4.40

 

 

2014 г.

 

Association between alcohol and cardiovascular disease: Mendelian randomisation analysis based on individual participant data.

Holmes MV, Dale CE, Zuccolo L, Silverwood RJ, Guo Y, Ye Z, Prieto-Merino D, Dehghan A, Trompet S, Wong A, Cavadino A, Drogan D, Padmanabhan S, Li S, Yesupriya A, Leusink M, Sundstrom J, Hubacek JA, Pikhart H, Swerdlow DI, Panayiotou AG, Borinskaya SA, Finan C, Shah S, Kuchenbaecker KB, Shah T, Engmann J, Folkersen L, Eriksson P, Ricceri F, Melander O, Sacerdote C, Gamble DM, Rayaprolu S, Ross OA, McLachlan S, Vikhireva O, Sluijs I, Scott RA, Adamkova V, Flicker L, Bockxmeer FM, Power C, Marques-Vidal P, Meade T, Marmot MG, Ferro JM, Paulos-Pinheiro S, Humphries SE, Talmud PJ, Mateo Leach I, Verweij N, Linneberg A, Skaaby T, Doevendans PA, Cramer MJ, Harst Pv, Klungel OH, Dowling NF, Dominiczak AF, Kumari M, Nicolaides AN, Weikert C, Boeing H, Ebrahim S, Gaunt TR, Price JF, Lannfelt L, Peasey A, Kubinova R, Pajak A, Malyutina S, Voevoda MI, Tamosiunas A, Maitland-van der Zee AH, Norman PE, Hankey GJ, Bergmann MM, Hofman A, Franco OH, Cooper J, Palmen J, Spiering W, Jong PA, Kuh D, Hardy R, Uitterlinden AG, Ikram MA, Ford I, Hyppönen E, Almeida OP, Wareham NJ, Khaw KT, Hamsten A, Husemoen LL, Tjønneland A, Tolstrup JS, Rimm E, Beulens JW, Verschuren WM, Onland-Moret NC, Hofker MH, Wannamethee SG, Whincup PH, Morris R, Vicente AM, Watkins H, Farrall M, Jukema JW, Meschia J, Cupples LA, Sharp SJ, Fornage M, Kooperberg C, LaCroix AZ, Dai JY, Lanktree MB, Siscovick DS, Jorgenson E, Spring B, Coresh J, Li YR, Buxbaum SG, Schreiner PJ, Ellison RC, Tsai MY, Patel SR, Redline S, Johnson AD, Hoogeveen RC, Hakonarson H, Rotter JI, Boerwinkle E, Bakker PI, Kivimaki M, Asselbergs FW, Sattar N, Lawlor DA, Whittaker J, Davey Smith G, Mukamal K, Psaty BM, Wilson JG, Lange LA, Hamidovic A, Hingorani AD, Nordestgaard BG, Bobak M, Leon DA, Langenberg C, Palmer TM, Reiner AP, Keating BJ, Dudbridge F, Casas JP; InterAct Consortium. //  BMJ. 2014 Jul 10;349:g4164. doi: 10.1136/bmj.g4164. Free Full Text – IF 17.215

 

Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB. The ctenophore genome and the evolutionary origins of neural systems. Nature. 2014 Jun 5;510(7503):109-14. – IF 38.597

 

Salnikova L.E. Clinicopathologic Characteristics of Brain Tumors Are Associated with the Presence and Patterns of TP53 Mutations: Evidence from the IARC TP53 Database. // Neuromolecular Med. 2014 Jan 31. [Epub ahead of print] DOI: 10.1007/s12017-014-8290-1 – IF 4.492

 

Salnikova LE, Smelaya TV, Vesnina IN, Golubev AM, Moroz VV. Genetic Susceptibility to Nosocomial Pneumonia, Acute Respiratory Distress Syndrome and Poor Outcome in Patients at Risk of Critical Illness. // Inflammation  2014; 37(2):295-305. DOI: 10.1007/s10753-013-9740-x – IF 2.457

 

Khadzhieva MB, Lutcenko NN, Volodin IV, Morozova KV, Salnikova LE. Association of Oxidative Stress Related Genes with Idiopathic Recurrent Miscarriage. // Free Radical Research. 2014;48(5):534-541. DOI:10.3109/10715762.2014.891735 – IF 3.279

 

Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. // Gene. 2014 Apr 25;540(1):1-10. – IF  2.341


The FANTOM Consortium and the RIKEN PMI and CLST (DGT),   в том числе сотрудники ИОГен  Иван Кулаковский, Юлия Медведева, Александр Фаворов, Артем Касьянов, Илья Воронцов и Всеволод Макеев:   A promoter-level mammalian expression atlas // Nature 507, 462–470  (27 March 2014)  -- IF 38.597

 

Lomakin YA, Zakharova MY, Stepanov AV, Dronina MA, Smirnov IV, Bobik TV, Pyrkov AY, Tikunova NV, Sharanova SN, Boitsov VM, Vyazmin SY, Kabilov MR, Tupikin AE, Krasnov AN, Bykova NA, Medvedeva YA, Fridman MV, Favorov AV, Ponomarenko NA, Dubina MV, Boyko AN, Vlassov VV, Belogurov Jr AA, Gabibov AG.  Heavy-light chain interrelations of MS-associated immunoglobulins probed by deep sequencing and rational variation.// Mol Immunol. 2014 Feb 14. pii: S0161-5890(14)00023-6. doi: 10.1016/j.molimm.2014.01.013 -- IF 2.645

 

Medvedeva YA, Khamis AM, Kulakovskiy IV, Ba-Alawi W, Bhuyan MS, Kawaji H, Lassmann T, Harbers M, Forrest AR, Bajic VB; FANTOM consortium. Effects of cytosine methylation on transcription factor binding sites. // BMC Genomics. 2014 Mar 26;15(1):119. doi: 10.1186/1471-2164-15-119. -- IF 4.40

 

Levitsky VG, Kulakovskiy IV, Ershov NI, Oschepkov DY, Makeev VJ, Hodgman TC, Merkulova TI. Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data. BMC Genomics. 2014 Jan 29;15(1):80. -- IF 4.40

 

Underhill PA, Poznik GD, Rootsi S, Järve M, Lin AA, Wang J, Passarelli B, Kanbar J, Myres NM, King RJ, Di Cristofaro J, Sahakyan H, Behar DM, Kushniarevich A, Sarac J, Saric T, Rudan P, Pathak AK, Chaubey G, Grugni V, Semino O, Yepiskoposyan L, Bahmanimehr A, Farjadian S, Balanovsky O, Khusnutdinova EK, Herrera RJ, Chiaroni J, Bustamante CD, Quake SR, Kivisild T, Villems R. The phylogenetic and geographic structure of Y-chromosome haplogroup R1a. // Eur J Hum Genet. 2014 Mar 26. doi: 10.1038/ejhg.2014.50  -- IF 4.319

Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. // Gene. 2014 ;540(1):1-10. doi: 10.1016/j.gene.2014.01.068 -- IF 2.341

 

Nezametdinova V.Z., Zakharevich N.V., Alekseeva M.G., Mavletova D.A., Averina O.A., Danilenko V.N. Identification and characterization of the eukaryote-like serine/threonine protein kinases in Bifidobacterium. Archives of Microbiology.  2014, V. 196, Issue 2, pp 125-136. --  IF 1.905

 

Thompson PM, Stein JL, Medland SE, Hibar DP, Vasquez AA, Renteria ME, Toro R, Jahanshad N, Schumann G, Franke B,Wright MJ, Martin NG, Agartz I, Alda M, Alhusaini S, Almasy L, Almeida J, Alpert K, Andreasen NC, Andreassen OA, Apostolova LG, Appel K, Armstrong NJ, Aribisala B, Bastin ME, Bauer M, Bearden CE, Bergmann O, Binder EB, Blangero J, Bockholt HJ,Bøen E, Bois C, Boomsma DI, Booth T, Bowman IJ, Bralten J, Brouwer RM, Brunner HG, Brohawn DG, Buckner RL, Buitelaar J,Bulayeva K. et al. (2014). The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging and Behavior, Online First : 1-30.  -- IF 2.667

 

Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Genes and evolution of two-domain toxins from lynx spider venom. FEBS Lett. 2014 Jan 23. pii: S0014-5793(14)00044-1.  doi: 10.1016/j.febslet.2014.01.018. -- 3.582


Slavokhotova AA, Rogozhin EA, Musolyamov AK, Andreev YA, Oparin PB, Berkut AA, Vassilevski AA, Egorov TA, Grishin EV, Odintsova TI. Novel antifungal α-hairpinin peptide from Stellaria media seeds: structure, biosynthesis, gene structure and evolution. Plant Mol Biol. 2014 Jan; 84(1-2):189-202.  doi: 10.1007/s11103-013-0127-z.  --  IF 3.518

 

Evsyukov A., Ivanov D. Seection variability for Arg48His in Alcohol Dehydrogenase ADH1B among Asian populations. Human Biology. 2013. Vol. 85. Issue 4. P. 569-578. --  IF  1.522

 

Der Sarkissian C, Brotherton P, Balanovsky O, Templeton JE, Llamas B, Soubrier J, Moiseyev V, Khartanovich V, Cooper A, Haak W; Genographic Consortium. Mitochondrial genome sequencing in Mesolithic North East Europe Unearths a new sub-clade within the broadly distributed human haplogroup C1. // PLoS One. 2014 Feb 4;9(2):e87612. -- IF  3.730

 

Clarke AC, Prost S, Stanton JA, White WT, Kaplan ME, Matisoo-Smith EA; Genographic Consortium (Balanovsky OP). From cheek swabs to consensus sequences: an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes. // BMC Genomics. 2014 Jan 25;15:68 -- IF 4.40

 


Публикационная активность Института общей генетики в 1990 - 2012 гг по данным Web of Knowledge

 

Публикационная активность ИОГен в 2006-2014 гг.