Динамика публикационной активности 2022
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Публикации в журналах Science и Nature:
Science. 2022; 376(6588):44-53. doi: 10.1126/science.abj6987
The complete sequence of a human genome.
Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, Aganezov S, Hoyt SJ, Diekhans M, Logsdon GA, Alonge M, Antonarakis SE, Borchers M, Bouffard GG, Brooks SY, Caldas GV, Chen NC, Cheng H, Chin CS, Chow W, de Lima LG, Dishuck PC, Durbin R, Dvorkina T, Fiddes IT, Formenti G, Fulton RS, Fungtammasan A, Garrison E, Grady PGS, Graves-Lindsay TA, Hall IM, Hansen NF, Hartley GA, Haukness M, Howe K, Hunkapiller MW, Jain C, Jain M, Jarvis ED, Kerpedjiev P, Kirsche M, Kolmogorov M, Korlach J, Kremitzki M, Li H, Maduro VV, Marschall T, McCartney AM, McDaniel J, Miller DE, Mullikin JC, Myers EW, Olson ND, Paten B, Peluso P, Pevzner PA, Porubsky D, Potapova T, Rogaev EI, Rosenfeld JA, Salzberg SL, Schneider VA, Sedlazeck FJ, Shafin K, Shew CJ, Shumate A, Sims Y, Smit AFA, Soto DC, Sović I, Storer JM, Streets A, Sullivan BA, Thibaud-Nissen F, Torrance J, Wagner J, Walenz BP, Wenger A, Wood JMD, Xiao C, Yan SM, Young AC, Zarate S, Surti U, McCoy RC, Dennis MY, Alexandrov IA, Gerton JL, O'Neill RJ, Timp W, Zook JM, Schatz MC, Eichler EE, Miga KH, Phillippy AM.
Science. 2022; 376(6588):eabl4178. doi: 10.1126/science.abl4178.
Complete genomic and epigenetic maps of human centromeres.
Altemose N, Logsdon GA, Bzikadze AV, Sidhwani P, Langley SA, Caldas GV, Hoyt SJ, Uralsky L, Ryabov FD, Shew CJ, Sauria MEG, Borchers M, Gershman A, Mikheenko A, Shepelev VA, Dvorkina T, Kunyavskaya O, Vollger MR, Rhie A, McCartney AM, Asri M, Lorig-Roach R, Shafin K, Lucas JK, Aganezov S, Olson D, de Lima LG, Potapova T, Hartley GA, Haukness M, Kerpedjiev P, Gusev F, Tigyi K, Brooks S, Young A, Nurk S, Koren S, Salama SR, Paten B, Rogaev EI, Streets A, Karpen GH, Dernburg AF, Sullivan BA, Straight AF, Wheeler TJ, Gerton JL, Eichler EE, Phillippy AM, Timp W, Dennis MY, O'Neill RJ, Zook JM, Schatz MC, Pevzner PA, Diekhans M, Langley CH, Alexandrov IA, Miga KH.
Science. 2021 Oct 8;374(6564):182-188. doi: 10.1126/science.abi5658.
Ten millennia of hepatitis B virus evolution.
Kocher A, Papac L, Barquera R, Key FM, Spyrou MA, Hübler R, Rohrlach AB, Aron F, Stahl R, Wissgott A, van Bömmel F, Pfefferkorn M, Mittnik A, Villalba-Mouco V, Neumann GU, Rivollat M, van de Loosdrecht MS, Majander K, Tukhbatova RI, Musralina L, Ghalichi A, Penske S, Sabin S, Michel M, Gretzinger J, Nelson EA, Ferraz T, Nägele K, Parker C, Keller M, Guevara EK, Feldman M, Eisenmann S, Skourtanioti E, Giffin K, Gnecchi-Ruscone GA, Friederich S, Schimmenti V, Khartanovich V, Karapetian MK, Chaplygin MS, Kufterin VV, Khokhlov AA, Chizhevsky AA, Stashenkov DA, Kochkina AF, Tejedor-Rodríguez C, de Lagrán ÍG, Arcusa-Magallón H, Garrido-Pena R, Royo-Guillén JI, Nováček J, Rottier S, Kacki S, Saintot S, Kaverzneva E, Belinskiy AB, Velemínský P, Limburský P, Kostka M, Loe L, Popescu E, Clarke R, Lyons A, Mortimer R, Sajantila A, de Armas YC, Hernandez Godoy ST, Hernández-Zaragoza DI, Pearson J, Binder D, Lefranc P, Kantorovich AR, Maslov VE, Lai L, Zoledziewska M, Beckett JF, Langová M, Danielisová A, Ingman T, Atiénzar GG, de Miguel Ibáñez MP, Romero A, Sperduti A, Beckett S, Salter SJ, Zilivinskaya ED, Vasil'ev DV, von Heyking K, Burger RL, Salazar LC, Amkreutz L, Navruzbekov M, Rosenstock E, Alonso-Fernández C, Slavchev V, Kalmykov AA, Atabiev BC, Batieva E, Calmet MA, Llamas B, Schultz M, Krauß R, Jiménez-Echevarría J, Francken M, Shnaider S, de Knijff P, Altena E, Van de Vijver K, Fehren-Schmitz L, Tung TA, Lösch S, Dobrovolskaya M, Makarov N, Read C, Van Twest M, Sagona C, Ramsl PC, Akar M, Yener KA, Ballestero EC, Cucca F, Mazzarello V, Utrilla P, Rademaker K, Fernández-Domínguez E, Baird D, Semal P, Márquez-Morfín L, Roksandic M, Steiner H, Salazar-García DC, Shishlina N, Erdal YS, Hallgren F, Boyadzhiev Y, Boyadzhiev K, Küßner M, Sayer D, Onkamo P, Skeates R, Rojo-Guerra M, Buzhilova A, Khussainova E, Djansugurova LB, Beisenov AZ, Samashev Z, Massy K, Mannino M, Moiseyev V, Mannermaa K, Balanovsky O, Deguilloux MF, Reinhold S, Hansen S, Kitov EP, Dobeš M, Ernée M, Meller H, Alt KW, Prüfer K, Warinner C, Schiffels S, Stockhammer PW, Bos K, Posth C, Herbig A, Haak W, Krause J, Kühnert D.
Nature. 2016; 538(7624):201-206.
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, Pääbo S, Kelso J, Patterson N, Reich D. - IF 38.138
Nature. 2016; 538(7624):238-242.
Genomic analyses inform on migration events during the peopling of Eurasia
Pagani L, Lawson DJ, Jagoda E, Mörseburg A, Eriksson A, Mitt M, Clemente F, Hudjashov G, DeGiorgio M, Saag L, Wall JD, Cardona A, Mägi R, Sayres MA, Kaewert S, Inchley C, Scheib CL, Järve M, Karmin M, Jacobs GS, Antao T, Iliescu FM, Kushniarevich A, Ayub Q, Tyler-Smith C, Xue Y, Yunusbayev B, Tambets K, Mallick CB, Saag L, Pocheshkhova E, Andriadze G, Muller C, Westaway MC, Lambert DM, Zoraqi G, Turdikulova S, Dalimova D, Sabitov Z, Sultana GN, Lachance J, Tishkoff S, Momynaliev K, Isakova J, Damba LD, Gubina M, Nymadawa P, Evseeva I, Atramentova L, Utevska O, Ricaut FX, Brucato N, Sudoyo H, Letellier T, Cox MP, Barashkov NA, Škaro V, Mulahasanovic L, Primorac D, Sahakyan H, Mormina M, Eichstaedt CA, Lichman DV, Abdullah S, Chaubey G, Wee JT, Mihailov E, Karunas A, Litvinov S, Khusainova R, Ekomasova N, Akhmetova V, Khidiyatova I, Marjanović D, Yepiskoposyan L, Behar DM, Balanovska E, Metspalu A, Derenko M, Malyarchuk B, Voevoda M, Fedorova SA, Osipova LP, Lahr MM, Gerbault P, Leavesley M, Migliano AB, Petraglia M, Balanovsky O, Khusnutdinova EK, Metspalu E, Thomas MG, Manica A, Nielsen R, Villems R, Willerslev E, Kivisild T, Metspalu M. - IF 38.138
Science. 2015 Aug 21;349(6250):aab3884.
Genomic evidence for the Pleistocene and recent population history of Native Americans.
Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, Cornejo OE, Moreno-Mayar JV, Korneliussen TS, Pierre T, Rasmussen M, Campos PF, Damgaard Pde B, Allentoft ME, Lindo J, Metspalu E, Rodríguez-Varela R, Mansilla J, Henrickson C, Seguin-Orlando A, Malmström H, Stafford T Jr, Shringarpure SS, Moreno-Estrada A, Karmin M, Tambets K, Bergström A, Xue Y, Warmuth V, Friend AD, Singarayer J, Valdes P, Balloux F, Leboreiro I, Vera JL, Rangel-Villalobos H, Pettener D, Luiselli D, Davis LG, Heyer E, Zollikofer CP, Ponce de León MS, Smith CI, Grimes V, Pike KA, Deal M, Fuller BT, Arriaza B, Standen V, Luz MF, Ricaut F, Guidon N, Osipova L, Voevoda MI, Posukh OL, Balanovsky O, Lavryashina M, Bogunov Y, Khusnutdinova E, Gubina M, Balanovska E, Fedorova S, Litvinov S, Malyarchuk B, Derenko M, Mosher MJ, Archer D, Cybulski J, Petzelt B, Mitchell J, Worl R, Norman PJ, Parham P, Kemp BM, Kivisild T, Tyler-Smith C, Sandhu MS, Crawford M, Villems R, Smith DG, Waters MR, Goebel T, Johnson JR, Malhi RS, Jakobsson M, Meltzer DJ, Manica A, Durbin R, Bustamante CD, Song YS, Nielsen R, Willerslev E. - IF 34.661
Science. 2015. 349(6250).
POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.
Raghavan M., Steinrücken M., Harris K., Schiffels S., Rasmussen S., DeGiorgio M., Albrechtsen A., Valdiosera C., Ávila-Arcos M.C., Malaspinas A.S., Eriksson A., Moltke I., Metspalu M., Homburger J.R., Wall J., Cornejo O.E., Moreno-Mayar J.V., Korneliussen T.S., Pierre T., Rasmussen M., Campos P.F., Damgaard P.B., Allentoft M.E., Lindo J., Metspalu E., Rodríguez-Varela R., Mansilla J., Henrickson C., Seguin-Orlando A., Malmström H., Stafford T.Jr., Shringarpure S., Moreno-Estrada A., Karmin M., Tambets K., Bergström A., Xue Y., Warmuth V., Friend A.D., Singarayer J., Valdes P., Balloux F., Leboreiro I., Vera J.L., Rangel-Villalobos H., Pettener D., Luiselli D., Davis L.G., Heyer E., Zollikofer C.P., Ponce de León M.S., Smith C.I., Grimes V., Pike K.A., Deal M., Fuller B.T., Arriaza B., Standen V., Luz M.F., Ricaut F., Guidon N., Osipova L., Voevoda M.I., Posukh O.L., Balanovsky O., Lavryashina M., Bogunov Y., Khusnutdinova E., Gubina M., Balanovska E., Fedorova S., Litvinov S., Malyarchuk B., Derenko M., Mosher M.J., Archer D., Cybulski J., Petzelt B., Mitchell J., Worl R., Norman P.J., Parham P., Kemp B.M., Kivisild T., Tyler-Smith C., Sandhu M.S., Crawford M., Villems R., Smith D.G., Waters M.R., Goebel T., Johnson J.R., Malhi R.S., Jakobsson M., Meltzer D.J., Manica A., Durbin R., Bustamante C.D., Song Y.S., Nielsen R., Willerslev E. - IF 34.661
Nature. 2014; 513(7518):409-13. – IF F 42.351
Ancient human genomes suggest three ancestral populations for present-day Europeans. //
Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, Nordenfelt S, Li H, de Filippo C, Prüfer K, Sawyer S, Posth C, Haak W, Hallgren F, Fornander E, Rohland N, Delsate D, Francken M, Guinet JM, Wahl J, Ayodo G, Babiker HA, Bailliet G, Balanovska E, Balanovsky O, Barrantes R, Bedoya G, Ben-Ami H, Bene J, Berrada F, Bravi CM, Brisighelli F, Busby GB, Cali F, Churnosov M, Cole DE, Corach D, Damba L, van Driem G, Dryomov S, Dugoujon JM, Fedorova SA, Gallego Romero I, Gubina M, Hammer M, Henn BM, Hervig T, Hodoglugil U, Jha AR, Karachanak-Yankova S, Khusainova R, Khusnutdinova E, Kittles R, Kivisild T, Klitz W, Kučinskas V, Kushniarevich A, Laredj L, Litvinov S, Loukidis T, Mahley RW, Melegh B, Metspalu E, Molina J, Mountain J, Näkkäläjärvi K, Nesheva D, Nyambo T, Osipova L, Parik J, Platonov F, Posukh O, Romano V, Rothhammer F, Rudan I, Ruizbakiev R, Sahakyan H, Sajantila A, Salas A, Starikovskaya EB, Tarekegn A, Toncheva D, Turdikulova S, Uktveryte I, Utevska O, Vasquez R, Villena M, Voevoda M, Winkler CA, Yepiskoposyan L, Zalloua P, Zemunik T, Cooper A, Capelli C, Thomas MG, Ruiz-Linares A, Tishkoff SA, Singh L, Thangaraj K, Villems R, Comas D, Sukernik R, Metspalu M, Meyer M, Eichler EE, Burger J, Slatkin M, Pääbo S, Kelso J, Reich D, Krause J.
Nature. 2014;505(7481):87-91.
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans.
Nature. 2014; 510(7503):109-14.
The ctenophore genome and the evolutionary origins of neural systems. //
Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB. – IF 42.351
Nature. 2014 Mar 27;507(7493):462-70.
A promoter-level mammalian expression atlas.
The FANTOM Consortium and the RIKEN PMI and CLST (DGT), в том числе сотрудники ИОГен Иван Кулаковский, Юлия Медведева, Александр Фаворов, Артем Касьянов, Илья Воронцов и Всеволод Макеев, Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Lassmann T, Itoh M, Summers KM, Suzuki H, Daub CO, Kawai J, Heutink P, Hide W, Freeman TC, Lenhard B, Bajic VB, Taylor MS, Makeev VJ, Sandelin A, Hume DA, Carninci P, Hayashizaki Y. – IF 42.351
Избранные публикации 2014-2022 гг.
Matveevsky S, Grishaeva T. Heterogeneity in conservation of multifunctional partner enzymes with meiotic importance, CDK2 kinase and BRCA1 ubiquitin ligase // Peer J. 2021. 9:e12231 doi: 10.7717/peerj.12231. PMID: 3469225
Mazheika I.S., Semenova M.A., Voronko O.V., Psurtseva N.V., Kolomiets O.L, Kamzolkina O.V.Evaluation of the carbonylation of filamentous fungi proteins by dry immune dot blotting // Fungal Biol. Fungal Biol 2021 Nov;125(11):923-933. doi: 10.1016/j.funbio.2021.06.006. PMID: 34649679
Spangenberg V., Arakelyan M., Cioffi M., Liehr T., Al-Rikabi A., Martynova E., Stepanyan I., Danielyan F., Galoyan E., Kolomiets O. Cytogenetic mechanisms of unisexuality in rock lizards // Sci Rep. 2020 May 26;10(1):8697.doi: 10.1038/s41598-020-65686-7. PMID: 32457493
Nezametdinova V.Z., Yunes R.A., Dukhinova M.S., Alekseeva M.G., Danilenko V.N. The Role of the PFNA Operon of Bifidobacteria in the Recognition of Host’s Immune Signals: Prospects for the Use of the FN3 Protein in the Treatment of COVID-19 // Int. J. Mol. Sci. 2021, 22(17), 9219; https://doi.org/10.3390/ijms22179219
Habib N. A., M. Müller, O. Gailing, A. Patzelt, G. Al Issai, K. V. Krutovsky, M. Wiehle 2021 Genetic diversity and differentiation of Olea europaea subsp. cuspidata (Wall. & G. Don) Cif.in the Hajar Mountains of Oman. Genetic Resources and Crop Evolution 68(3): 865–883 https://doi.org/10.1007/s10722-020-01030-2 (IF = 1.071; Q3)
Cuervo-Alarcon L., M. Arend, M. Müller, C. Sperisen, R. Finkeldey, K. V. Krutovsky 2021 A candidate gene association analysis identifies SNPs potentially involved in drought tolerance in European beech (Fagus sylvatica L.). Scientific Report 11: 2386. https://doi.org/10.1038/s41598-021-81594-w (IF = 4.122; Q1)
Tarieiev A. S., O. Gailing, K. V. Krutovsky 2021 ITS secondary structure reconstruction to resolve taxonomy and phylogeny of the Betula L. genus. PeerJ 9:e10889 https://doi.org/10.7717/peerj.10889 (IF = 2.380; Q1)
Perfileva A. I., O. A. Nozhkina, T. V. Ganenko, I. A. Graskova, B. G. Sukhov, A. V. Artem’ev, B. A. Trofimov, K. V. Krutovsky 2021 Selenium nanocomposites in natural matrices as potato recovery agent. International Journal of Molecular Sciences 22(9), 4576; https://doi.org/10.3390/ijms22094576 (IF = 4.556; Q1)
Nieves-Orduña, H. E., M. Müller, K. V. Krutovsky, O. Gailing. 2021 Geographic patterns of genetic variation among cacao (Theobroma cacao L.) populations based on chloroplast markers. Diversity 2021, 13(6): 249 https://www.mdpi.com/1424-2818/13/6/249/ htm https://doi.org/10.3390/d13060249 (IF = 1.402; Q3)
Abramov S, Boytsov A, Bykova D, Penzar DD, Yevshin I, Kolmykov SK, Fridman MV, Favorov AV, Vorontsov IE, Baulin E, Kolpakov F, Makeev VJ, Kulakovskiy IV. Landscape of allele-specific transcription factor binding in the human genome. //Nat Commun. 2021 May 12;12(1):2751. doi: 10.1038/s41467-021-23007-0
Kramina T.E., Meschersky I.G., Degtjareva G.V., Samigullin T.H., Belokon Y.S., Schanzer I.A. Genetic variation in the Lotus corniculatus complex (Fabaceae) in northern Eurasia as inferred from nuclear microsatellites and plastid trnL-trnF sequences // Botanical Journal of the Linnean Society. 2018;188(1):87-116.
https://doi.org/10.1093/botlinnean/boy042
https://academic.oup.com/botlinnean/article/188/1/87/5073290
Zolotareva K.I., Bannikova A.A., Belokon M.M., Belokon Y.S., Politov D.V., Rutovskaya M.V., Hlyap L.A., Starykov V.P., Lebedev V.S. Genetic diversity and structure of the hedgehogs Erinaceus europaeus and Erinaceus roumanicus: evidence for ongoing hybridization in Eastern Europe // Biological Journal of the Linnean Society. 2021;132(1):174-195.
https://doi.org/10.1093/biolinnean/blaa135
https://academic.oup.com/biolinnean/article-abstract/132/1/174/6024602
Compensation for the absence of the catalytically active half of DNA polymerase ε in yeast by positively selected mutations in CDC28. // Genetics. 2021 Apr 12:iyab060. doi: 10.1093/genetics/iyab060
Nat Genet. 2021 Apr;53(4):564-573. doi: 10.1038/s41588-021-00807-0. Epub 2021 Mar 18
Microbiol Resour Announc. 2021 Mar 11;10(10):e01314-20. doi: 10.1128/MRA.01314-20
Sex differences in the meiotic behavior of an XX sex chromosome pair in males and females of the mole vole Ellobius tancrei: turning an X into a Y chromosome?// Chromosoma. 2021 Apr 6. doi: 10.1007/s00412-021-00755-y
DNA-methylation for the detection and distinction of 19 human malignancies.// Epigenetics. 2021 Mar 5:1-11. doi: 10.1080/15592294.2021.1890885.
Genome Sequencing of Kocuria varians Strain 80, Isolated from Starter Culture for Dry Sausage.// Microbiol Resour Announc. 2021 Feb 25;10(8):e00086-21. doi: 10.1128/MRA.00086-21.
Kinase CDK2 in Mammalian Meiotic Prophase I: Screening for Hetero- and Homomorphic Sex Chromosomes.// Int J Mol Sci. 2021 Feb 17;22(4):1969. doi: 10.3390/ijms22041969.
GTRD: an integrated view of transcription regulation // Nucleic Acids Res. 2021 Jan 8;49(D1):D104-D111. doi: 10.1093/nar/gkaa1057.
Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates.// Methods Mol Biol. 2021;2252:269-294. doi: 10.1007/978-1-0716-1150-0_13.
Therapeutic B-cell depletion reverses progression of Alzheimer's disease. // Nat Commun. 2021 Apr 12;12(1):2185. doi: 10.1038/s41467-021-22479-4.
Meiotic synapsis of homeologous chromosomes and mismatch repair protein detection in the parthenogenetic rock lizard Darevskia unisexualis. // Mol Reprod Dev. 2021 Feb;88(2):119-127. doi: 10.1002/mrd.23450.
Genome Analysis of Sable Fur Color Links a Lightened Pigmentation Phenotype to a Frameshift Variant in the Tyrosinase-Related Protein 1 Gene. // Genes (Basel). 2021; 12(2):157. doi: 10.3390/genes12020157.
Supervised mutational signatures for obesity and other tissue-specific etiological factors in cancer.// Elife. 2021 Jan 25;10:e61082. doi: 10.7554/eLife.61082.
Draft Genome Sequence of Rhodococcus erythropolis HX7, a Psychrotolerant Soil-Derived Oil Degrader.//Microbiol Resour Announc. 2021 Jan 21;10(3):e01353-20. doi: 10.1128/MRA.01353-20.
Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates. // Methods Mol Biol. 2021;2252:269-294. doi: 10.1007/978-1-0716-1150-0_13.
GTRD: an integrated view of transcription regulation. // Nucleic Acids Res. 2021 Jan 8;49(D1):D104-D111. doi: 10.1093/nar/gkaa1057
Newly Identified Members of FGFR1 Splice Variants Engage in Cross-talk with AXL/AKT Axis in Salivary Adenoid Cystic Carcinoma.// Cancer Res. 2021 Feb 15;81(4):1001-1013. doi: 10.1158/0008-5472.CAN-20-1780.
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1.
Identification of Mutations Conferring Tryptanthrin Resistance to Mycobacterium smegmatis.// Antibiotics (Basel). 2020 Dec 23;10(1):6. doi: 10.3390/antibiotics10010006
Bacterial Metabolites of Human Gut Microbiota Correlating with Depression.// Int J Mol Sci. 2020 Dec 3;21(23):9234. doi: 10.3390/ijms21239234.
Hypothesis: AA amyloidosis is a factor causing systemic complications after coronavirus disease. // Prion. 2021 Dec;15(1):53-55. doi: 10.1080/19336896.2021.1910468.
2020
Abdyyev V.K., Kiseleva E.V., Spangenberg V.E., Kolomiets O.L., Andrade N.S., Sant D.W., Dashinimaev E.B., Vorotelyak E.A., Vasiliev A.V. In vitro derived female hPGCLCs are unable to complete meiosis in embryoid bodies // Experimental Cell Research 2020. Volume 397. Issue 2, 15 December 2020. 112358 https://doi.org/10.1016/j.yexcr.2020.112358 PMID: 33160998
Galoyan, E., Moskalenko, V., Gabelaia, M., Tarkhnishvili, D., Spangenberg, V., Chamkina, A., Arakelyan, M. Syntopy of two species of rock lizards (Darevskia raddei and Darevskia portschinskii) may not lead to hybridization between the . Zoologischer Anzeiger, 2020.288, 43-52. https://doi.org/10.1016/j.jcz.2020.06.007 .
Matveevsky S., Kolomiets O., Bogdanov A., Alpeeva E., Bakloushinskaya I. Meiotic chromosome contacts as a plausible prelude for Robertsonian translocations. Genes. 2020; 11(4):386. doi: https://doi.org/10.3390/genes11040386 (Q2, IF 3,822).
Matveevsky S., Tretiakov A., Kashintsova A., Bakloushinskaya I., Kolomiets O. Meiotic nuclear architecture in distinct mole vole hybrids with Robertsonian translocations: chromosome chains, stretched centromeres, and distorted recombination // International Journal of Molecular Sciences. 2020; 21(20):7630. doi: https://doi.org/10.3390/ijms21207630 PMID: 33076404
Mazheika I., Voronko O., Kamzolkina O. Early endocytosis as a key to understanding mechanisms of plasma membrane tension regulation in filamentous fungi. // Biology of the Cell. 2020. Biol Cell. 2020 Dec;112(12):409-426. doi: https://doi.org/10.1111/boc.202000066 Epub 2020 Sep 9.PMID: 32860722 PMID: 32860722
Mazheika I., Voronko O., Kudryavtseva O., Novoselova D., Pozdnyakov L., Mukhin V., Kolomiets O., Kamzolkina O. Nitrogen-obtaining and -conserving strategies in xylotrophic basidiomycetes // Mycologia. 2020. 112(3):455-473. DOI: https://doi.org/10.1080/00275514.2020.1716567 PMID: 32238121
Mazheika I.S . Kamzolkina O.V. Does macrovesicular endocytosis occur in fungal hyphae? // Fungal Biology Reviews, 2021, V. 38, P. 1- 8 https://doi.org/10.1016/j.fbr.2021.07.001
Spangenberg V., Kolomiets O., Stepanyan I., Galoyan E., Cioffi M, Martynova E., Martirosyan I., Grishaeva T., Danielyan F., Al-Rikabi A., Liehr T., Arakelyan M. Evolution of the parthenogenetic rock lizard hybrid karyotype: Robertsonian translocation between two maternal chromosomes in Darevskia rostombekowi // Chromosoma. 2020. doi: https://doi.org/10.1007/s00412-020-00744-7 PMID: 3312381
A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease. // BMC Genomics. 2020 Nov 2;21(1):754. doi: 10.1186/s12864-020-07109-5.
Morozova I, Kasianov A, Bruskin S, Neukamm J, Molak M, Batieva E, Pudło A, Rühli FJ, Schuenemann VJ. New ancient Eastern European Yersinia pestis genomes illuminate the dispersal of plague in Europe.// Philos Trans R Soc Lond B Biol Sci. 2020 Nov 23;375(1812):20190569. doi: 10.1098/rstb.2019.0569. Epub 2020 Oct 5.
Svishcheva G., Babayan O., Lkhasaranov B., Tsendsuren A., Abdurasulov A., Stolpovsky Yu. Microsatellite Diversity and Phylogenetic Relationships among Eurasian Bos Taurus Breeds with an Emphasis on Rare and Ancient Local Cattle // Animals. 2020. T.10. № 9. P. 1493-1516. doi.org/10.3390/ani10091493 (IF 2.323, Q1 )
A Multi-strain Potential Probiotic Formulation of GABA-Producing Lactobacillus plantarum 90sk and Bifidobacterium adolescentis 150 with Antidepressant Effects. Yunes RA, Poluektova EU, Vasileva EV, Odorskaya MV, Marsova MV, Kovalev GI, Danilenko VN. Probiotics Antimicrob Proteins. 2020 Sep;12(3):973-979. doi: 10.1007/s12602-019-09601-1.
FN3 protein fragment containing two type III fibronectin domains from B. longum GT15 binds to human tumor necrosis factor alpha in vitro. Dyakov IN, Mavletova DA, Chernyshova IN, Snegireva NA, Gavrilova MV, Bushkova KK, Dyachkova MS, Alekseeva MG, Danilenko VN. Anaerobe. 2020 Oct;65:102247. doi: 10.1016/j.anaerobe.2020.102247. Epub 2020 Aug 6.
Toxin-Antitoxin Systems: A Tool for Taxonomic Analysis of Human Intestinal Microbiota. Klimina KM, Voroshilova VN, Poluektova EU, Veselovsky VA, Yunes RA, Kovtun AS, Kudryavtseva AV, Kasianov AS, Danilenko VN. Toxins (Basel). 2020 Jun 12;12(6):388. doi: 10.3390/toxins12060388.
Transcriptomic dataset of Mycolicibacterium smegmatis exposed to an imidazo[1,2-b][1,2,4,5]tetrazine. Vatlin AA, Klimina KM, Frolova SG, Danilenko VN, Maslov DA. Data Brief. 2020 Jun 2;31:105805. doi: 10.1016/j.dib.2020.105805. eCollection
The bacterial neurometabolic signature of the gut microbiota of young children with autism spectrum disorders. Averina OV, Kovtun AS, Polyakova SI, Savilova AM, Rebrikov DV, Danilenko VN. J Med Microbiol. 2020 Apr;69(4):558-571. doi: 10.1099/jmm.0.001178.
MmpS5-MmpL5 Transporters Provide Mycobacterium smegmatis Resistance to imidazo[1,2-b][1,2,4,5]tetrazines. Maslov DA, Shur KV, Vatlin AA, Danilenko VN. Pathogens. 2020 Feb 28;9(3):166. doi:10.3390/pathogens9030166.
Bioinformatics analysis of genes of Streptomyces xinghaiensis (fradiae) ATCC 19609 with a focus on mutations conferring resistance to oligomycin A and its derivatives. Vatlin AA, Bekker OB, Lysenkova LN, Shchekotikhin AE, Danilenko VN. J Glob Antimicrob Resist. 2020 Sep;22:47-53. doi: 10.1016/j.jgar.2020.01.026.
Antibiotic Resistance Genes in the Gut Microbiota of Children with Autistic Spectrum Disorder as Possible Predictors of the Disease. Kovtun AS, Averina OV, Alekseeva MG, Danilenko VN. Microb Drug Resist. 2020 Nov;26(11):1307-1320. doi: 10.1089/mdr.2019.0325.
Generation of an induced pluripotent stem cell line MNDINSi001-A from a patient with neonatal diabetes caused by a heterozygous INS mutation. Panova AV, Klementieva NV, Sycheva AV, Goliusova DV, Khokhlov NV, Zubkova NA, Tiulpakov AN, Kiselev SL. Stem Cell Res. 2020 Jul 25;47:101929. doi:10.1016/j.scr.2020.101929.
Locally Delivered Umbilical Cord Mesenchymal Stromal Cells Reduce Chronic Inflammation in Long-Term Nonhealing Wounds: A Randomized Study. Suzdaltseva Y, Zhidkih S, Kiselev SL, Stupin V. Stem Cells Int. 2020 Feb 14;2020:5308609. doi: 10.1155/2020/5308609. eCollection 2020.
Genome analysis of American minks reveals link of mutations in Ras-related protein-38 gene to Moyle brown coat phenotype. Manakhov AD, Mintseva MY, Andreev IA, Uralsky LI, Andreeva TV, Trapezov OV, Rogaev EI. Sci Rep. 2020 Sep 28;10(1):15876. doi: 10.1038/s41598-020-72239-5.
The curly coat phenotype of the Ural Rex feline breed is associated with a mutation in the lipase H gene. Manakhov AD, Andreeva TV, Rogaev EI. Anim Genet. 2020 Aug;51(4):584-589. doi: 10.1111/age.12958.
Genetic Association Between Alzheimer's Disease Risk Variant of the PICALM Gene and EEG Functional Connectivity in Non-demented Adults. Ponomareva N, Andreeva T, Protasova M, Konovalov R, Krotenkova M, Malina D, Mitrofanov A, Fokin V, Illarioshkin S, Rogaev E. Front Neurosci. 2020 Apr 16;14:324. doi: 10.3389/fnins.2020.00324. eCollection 2020.
Dissection of the Human T-Cell Receptor γ Gene Repertoire in the Brain and Peripheral Blood Identifies Age- and Alzheimer's Disease-Associated Clonotype Profiles. Aliseychik M, Patrikeev A, Gusev F, Grigorenko A, Andreeva T, Biragyn A, Rogaev E. Front Immunol. 2020 Jan 29;11:12. doi: 10.3389/fimmu.2020.00012. eCollection 2020.
Chromatin profiling of cortical neurons identifies individual epigenetic signatures in schizophrenia. Gusev FE, Reshetov DA, Mitchell AC, Andreeva TV, Dincer A, Grigorenko AP, Fedonin G, Halene T, Aliseychik M, Filippova E, Weng Z, Akbarian S, Rogaev EI. Transl Psychiatry. 2019 Oct 17;9(1):256. doi: 10.1038/s41398-019-0596-1.
Pettenkofer T., R. Finkeldey, M. Müller, K. V. Krutovsky, B. Vornam, L. Leinemann, O. Gailing 2020 Genetic variation of introduced red oak (Quercus rubra) stands in Germany compared to North American populations. European Journal of Forest Research 139(2): 321–331 2020 https://doi.org/10.1007/s10342-019-01256-5 (IF = 2.451; Q1)
Lebedev V. G., N. M. Subbotina, O. P. Maluchenko, T. N. Lebedeva, K. V. Krutovsky, K. A. Shestibratov (2020) Transferability and polymorphism of SSR markers located in flavonoid pathway genes in Fragaria and Rubus species. Genes 11(1): 11 https://doi.org/10.3390/genes11010011 (IF = 3.759; Q2)
Caré O., O. Gailing, M. Müller, K. V. Krutovsky, L. Leinemann 2020 Crown morphology in Norway spruce (Picea abies [Karst.] L.) as adaptation to mountainous environments is associated with single nucleotide polymorphisms (SNPs) in genes regulating seasonal growth rhythm. Tree Genetics & Genomes 16(1): 4 https://doi.org/10.1007/s11295-019-1394-x (IF = 1.862; Q1)
Caré O., O. Gailing, M. Müller, K. V. Krutovsky, L. Leinemann (2020) Assoziation zwischen Kandidatengenen und der Kronenform der Fichte (Picea abies (L.) H. Karst.) zeigt die Klimaadaption autochthoner Hochlagenbestände. In Proceedings Liesebach M (ed) Forstpflanzenzüchtung für die Praxis: 6. Tagung der Sekti on Forstgenetik/Forstpflanzenzüchtung vom 16. Bis 18. September 2019 in Dresden: Tagungsband. Braunschweig: Johann Heinrich von Thünen-Institut, 296 p, Thünen Rep 76, doi:10.3220/rep1584625360000, pp. 73-80 (https://www.thuenen.de/media/publikationen/thuenen-report/Thuenen_Report_76.pdf)
Breidenbach N., H. Wildhagen, C. Bandurski, L. Engelhardt, M. Büttner, O. Gailing, K. V. Krutovsky (2020) Phänotypische und genetische Reaktionen von Sequoia sempervirens Herkünften auf Frosttemperaturen. In Proceedings Liesebach M (ed) Forstpflanzenzüchtung für die Praxis: 6. Tagung der Sekti on Forstgenetik/Forstpflanzenzüchtung vom 16. Bis 18. September 2019 in Dresden: Tagungsband. Braunschweig: Johann Heinrich von Thünen-Institut, 296 p, Thünen Rep 76, doi:10.3220/rep1584625360000, pp. 200-210 (https://www.thuenen.de/media/publikationen/thuenen-report/Thuenen_Report_76.pdf)
Vidyagina E. O., N. M. Subbotina, V. A. Belyi, V. G. Lebedev, K. V. Krutovsky, K. A. Shestibratov (2020) Various effects of the expression of the xyloglucanase gene from Penicillium canescens in transgenic aspen under semi-natural conditions. BMC Plant Biol 20, 251 https://doi.org/10.1186/s12870-020-02469-2 (IF = 3.497; Q1)
Caré O., O. Gailing, M. Müller, K. V. Krutovsky, L. Leinemann. 2020 Mating system in a native Norway spruce (Picea abies [L.] Karst.) stand - Relatedness and effective pollen population size show an association with the germination percentage of single tree progenies. Diversity 12(7): 266 https://doi.org/10.3390/d12070266 (IF = 1.402; Q3)
Breidenbach N., V. V. Sharov, O. Gailing, K. V. Krutovsky (2020) De novo transcriptome assembly of cold stressed clones of the hexaploid Sequoia sempervirens (D. Don) Endl. Scientific Data 7, 239 https://doi.org/10.1038/s41597-020-00576-1 (IF = 5.541; Q1)
Pettenkofer T.A., R. Finkeldey, M. Müller, K. V. Krutovsky, B. Vornam, L. Leinemann, O. Gailing Development of novel Quercus rubra chloroplast genome CAPS markers for haplotype identification. Silvae Genetica 2020; 69(1): 78-85 https://content.sciendo.com/view/journals/sg/69/1/article-p78.xml https://doi.org/10.2478/sg-2020-0011 (IF = 1.111; Q3)
Akulova V.S., V.V. Sharov, A.I. Aksyonova, Yu.A. Putintseva, N.V. Oreshkova, S.I. Feranchuk, D.A. Kuzmin, I.N. Pavlov, Y. A. Litovka, K.V. Krutovsky 2020 De novo sequencing, assembly and functional annotation of Armillaria borealis genome. BMC Genomics 21(Suppl 7): 534. https://doi.org/10.1186/s12864-020-06964-6 IF = 3.594; Q2)
Götz J., Konstantin V. Krutovsky, Ludger Leinemann, Markus Müller, Om P. Rajora, Oliver Gailing 2020 Chloroplast haplotypes of northern red oak (Quercus rubra L.) stands in Germany suggest their origin from northeastern Canada // Forests 11(9): 1025; https://doi.org/10.3390/f11091025 (IF = 2.221; Q1)
Putintseva Yu.A., E.I. Bondar, E.P. Simonov, V.V. Sharov, N.V. Oreshkova, D.A. Kuzmin, Yu.M. Konstantinov, V.N. Shmakov, V.I. Belkov, M.S. Sadovsky, O. Keech, K.V. Krutovsky 2020 Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known mitogenome. BMC Genomics 21: 654 https://doi.org/10.1186/s12864-020-07061-4 (IF = 3.594; Q2)
Kuchma O., D. Janz, L. Leinemann, A. Polle, K. V. Krutovsky, O. Gailing 2020 Hybrid and environmental effects on gene expression in poplar clones in pure and mixed with black locust stands. Forests 11(10): 1075 https://doi.org/10.3390/f11101075 (IF = 2.221; Q1)
Breidenbach N., O. Gailing, K. V. Krutovsky 2020 Genetic structure of coast redwood (Sequoia sempervirens [D. Don] Endl.) populations in and outside of the natural distribution range based on 2019nuclear and chloroplast microsatellite markers. PLoS One 15(12): e0243556. https://doi.org/10.1371/journal.pone.0243556 (IF = 2.740; Q2)
2019
Galoyan E., Bolshakova A., Abrahamyan M., Petrosyan R., Komarova V.1, Spangenberg V., Arakelyan M. Natural history of Valentin's rock lizard (Darevskia valentini) in Armenia // Zoological Research. 2019 Jul 18;40(4):277-292. DOI: https://doi.org/10.24272/j.issn.2095-8137.2019.036 PMID: 31310063
Shaikevich E., Bogacheva A., Rakova V., Ganushkina L., Ilinsky Yu., 2019. Wolbachia symbionts in mosquitoes: Intra- and intersupergroup recombinations, horizontal transmission and evolution. // Molecular Phylogenetics and Evolution. 134: 24-34, https://doi.org/10.1016/j.ympev.2019.01.020. (IF 3,5 Q1)
Shaikevich E, Bogacheva A., Ganushkina L. 2019. Dirofilaria and Wolbachia in mosquitoes (Diptera: Culicidae) in central European Russia and on the Black Sea coast. Parasite 26, 2. https://doi.org/10.1051/parasite/2019002 (IF 2,5 Q1)
A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease. Sethi S, Vorontsov IE, Kulakovskiy IV, Greenaway S, Williams J, Makeev VJ, Brown SDM, Simon MM, Mallon AM. BMC Genomics. 2020 Nov 2;21(1):754. doi: 10.1186/s12864-020-07109-5.
Functional annotation of human long noncoding RNAs via molecular phenotyping.
Ramilowski JA, Yip CW, Agrawal S, Chang JC, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC, Ouyang JF, Parkinson N, Petri A, Roos L, Severin J, Yasuzawa K, Abugessaisa I, Akalin A, Antonov IV, Arner E, Bonetti A, Bono H, Borsari B, Brombacher F, Cameron CJ, Cannistraci CV, Cardenas R, Cardon M, Chang H, Dostie J, Ducoli L, Favorov A, Fort A, Garrido D, Gil N, Gimenez J, Guler R, Handoko L, Harshbarger J, Hasegawa A, Hasegawa Y, Hashimoto K, Hayatsu N, Heutink P, Hirose T, Imada EL, Itoh M, Kaczkowski B, Kanhere A, Kawabata E, Kawaji H, Kawashima T, Kelly ST, Kojima M, Kondo N, Koseki H, Kouno T, Kratz A, Kurowska-Stolarska M, Kwon ATJ, Leek J, Lennartsson A, Lizio M, López-Redondo F, Luginbühl J, Maeda S, Makeev VJ, Marchionni L, Medvedeva YA, Minoda A, Müller F, Muñoz-Aguirre M, Murata M, Nishiyori H, Nitta KR, Noguchi S, Noro Y, Nurtdinov R, Okazaki Y, Orlando V, Paquette D, Parr CJC, Rackham OJL, Rizzu P, Sánchez Martinez DF, Sandelin A, Sanjana P, Semple CAM, Shibayama Y, Sivaraman DM, Suzuki T, Szumowski SC, Tagami M, Taylor MS, Terao C, Thodberg M, Thongjuea S, Tripathi V, Ulitsky I, Verardo R, Vorontsov IE, Yamamoto C, Young RS, Baillie JK, Forrest ARR, Guigó R, Hoffman MM, Hon CC, Kasukawa T, Kauppinen S, Kere J, Lenhard B, Schneider C, Suzuki H, Yagi K, de Hoon MJL, Shin JW, Carninci P. Genome Res. 2020 Jul;30(7):1060-1072. doi: 10.1101/gr.254219.119.
Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study. Ambrosini G, Vorontsov I, Penzar D, Groux R, Fornes O, Nikolaeva DD, Ballester B, Grau J, Grosse I, Makeev V, Kulakovskiy I, Bucher P. Genome Biol. 2020 May 11;21(1):114. doi: 10.1186/s13059-020-01996-3.
Signaling Pathways Potentially Responsible for Foam Cell Formation: Cholesterol Accumulation or Inflammatory Response-What is First? Orekhov AN, Sukhorukov VN, Nikiforov NG, Kubekina MV, Sobenin IA, Foxx KK, Pintus S, Stegmaier P, Stelmashenko D, Kel A, Poznyak AV, Wu WK, Kasianov AS, Makeev VY, Manabe I, Oishi Y. Int J Mol Sci. 2020 Apr 14;21(8):2716. doi: 10.3390/ijms21082716.
Pneumonia: host susceptibility and shared genetics with pulmonary function and other traits. Khadzhieva MB, Kuzovlev AN, Salnikova LE. // Clin Exp Immunol. 2019 Sep 5. doi: 10.1111/cei.13367
Chromatin profiling of cortical neurons identifies individual epigenetic signatures in schizophrenia. Gusev FE, Reshetov DA, Mitchell AC, Andreeva TV, Dincer A, Grigorenko AP, Fedonin G, Halene T, Aliseychik M, Filippova E, Weng Z, Akbarian S, Rogaev EI. // Transl Psychiatry. 2019 Oct 17;9(1):256. doi: 10.1038/s41398-019-0596-1.
Tumor-derived Thymic stromal lymphopoietin expands bone marrow B-cell precursors in circulation to support metastasis.Ragonnaud E, Moritoh K, Bodogai M, Gusev F, Garaud S, Chen C, Wang X, Baljinnyam T, Becker KG, Maul RW, Willard-Gallo K, Rogaev E, Biragyn A. // Cancer Res. 2019 Oct 1. pii: canres.1058.2019. doi: 10.1158/0008-5472.CAN-19-1058. [Epub ahead of print]
Classification and monomer-by-monomer annotation dataset of suprachromosomal family 1 alpha satellite higher-order repeats in hg38 human genome assembly.Uralsky LI, Shepelev VA, Alexandrov AA, Yurov YB, Rogaev EI, Alexandrov IA. // Data Brief. 2019 Mar 8;24:103708. doi: 10.1016/j.dib.2019.103708. eCollection 2019 Jun.
Epigenetic-genetic chromatin footprinting identifies novel and subject-specific genes active in prefrontal cortex neurons.Gusev FE, Reshetov DA, Mitchell AC, Andreeva TV, Dincer A, Grigorenko AP, Fedonin G, Halene T, Aliseychik M, Goltsov AY, Solovyev V, Brizgalov L, Filippova E, Weng Z, Akbarian S, Rogaev EI. // FASEB J. 2019 Jul;33(7):8161-8173. doi: 10.1096/fj.201802646R.
Genome analysis identifies the mutant genes for common industrial Silverblue and Hedlund white coat colours in American mink.Manakhov AD, Andreeva TV, Trapezov OV, Kolchanov NA, Rogaev EI. // Sci Rep. 2019 Mar 14;9(1):4581. doi: 10.1038/s41598-019-40918-7.
Differentially Methylated Super-Enhancers Regulate Target Gene Expression in Human Cancer. Flam EL, Danilova L, Kelley DZ, Stavrovskaya E, Guo T, Considine M, Qian J, Califano JA, Favorov A, Fertig EJ, Gaykalova DA.// Sci Rep. 2019 Oct 21;9(1):15034. doi: 10.1038/s41598-019-51018-x.
Allele-specific nonstationarity in evolution of influenza A virus surface proteins. Popova AV, Safina KR, Ptushenko VV, Stolyarova AV, Favorov AV, Neverov AD, Bazykin GA. // Proc Natl Acad Sci U S A. 2019 Oct 15;116(42):21104-21112. doi: 10.1073/pnas.1904246116.
Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data. Davis-Marcisak EF, Sherman TD, Orugunta P, Stein-O'Brien GL, Puram SV, Roussos Torres ET, Hopkins AC, Jaffee EM, Favorov AV, Afsari B, Goff LA, Fertig EJ. // Cancer Res. 2019 Oct 1;79(19):5102-5112. doi: 10.1158/0008-5472.CAN-18-3882.
Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers. Ando M, Saito Y, Xu G, Bui NQ, Medetgul-Ernar K, Pu M, Fisch K, Ren S, Sakai A, Fukusumi T, Liu C, Haft S, Pang J, Mark A, Gaykalova DA, Guo T, Favorov AV, Yegnasubramanian S, Fertig EJ, Ha P, Tamayo P, Yamasoba T, Ideker T, Messer K, Califano JA. // Nat Commun. 2019 May 29;10(1):2415. doi: 10.1038/s41467-019-10557-7.
Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers. Ando M, Saito Y, Xu G, Bui NQ, Medetgul-Ernar K, Pu M, Fisch K, Ren S, Sakai A, Fukusumi T, Liu C, Haft S, Pang J, Mark A, Gaykalova DA, Guo T, Favorov AV, Yegnasubramanian S, Fertig EJ, Ha P, Tamayo P, Yamasoba T, Ideker T, Messer K, Califano JA. // Nat Commun. 2019 May 16;10(1):2188. doi: 10.1038/s41467-019-09937-w.
Breidenbach N., O. Gailing, K. V. Krutovsky 2019 Development of novel polymorphic nuclear and chloroplast microsatellite markers in coast redwood (Sequoia sempervirens). Plant Genetic Resources 17(3): 293–297 doi:10.1017/S147926211800045X https://doi.org/10.1017/S147926211800045X Published online: 04 December 2018 (IF = 0.869/0.813; Q4/Q2)
Kryvokhyzha M. V., K. V. Krutovsky, N. M. Rashydova 2019 Expression of flowering genes in Arabidopsis thaliana under acute and chronic irradiation. International Journal of Radiation Biology 95(5): 626–634 doi: 10.1080/09553002.2019.1562251 Published online: 3 January 2019 https://www.tandfonline.com/doi/pdf/10.1080/09553002.2019.1562251 (IF = 2.368/2.100; Q2/Q1)
Moler R. V. E., A. Abakir, M. Eleftheriou, J. S. Johnson, K. V. Krutovsky, L. C. Lewis, A. Ruzov, A. V. Whipple, O. P. Rajora, (2019) Population Epigenomics: Advancing Understanding of Phenotypic Plasticity, Acclimation, Adaptation and Diseases. Chapter in Population Genomics: Concepts, Approaches and Applications (Edited by Om Rajora), Springer, Cham, pp. 179-260. doi: 10.1007/13836_2018_59 (https://doi.org/10.1007/13836_2018_59)
Balkenhol N., Dudaniec R. Y., Krutovsky K. V., Johnson J. S., Cairns D. M., Segelbacher G., Selkoe K. A., von der Heyden S., Wang I. J., Selmoni O., Joost S. (2019) Landscape Genomics: Understanding Relationships Between Environmental Heterogeneity and Genomic Characteristics of Populations. Chapter in Population Genomics: Concepts, Approaches and Applications (Edited by Om Rajora), Springer, Cham, pp. 261-322. doi: 10.1007/13836_2017_2 (https://link.springer.com/chapter/10.1007/13836_2017_2)
Johnson, J. S., K. V. Krutovsky, O. P. Rajora, K. D. Gaddis, D. M. Cairns (2019) Advancing Biogeography through Population Genomics. Chapter in Population Genomics: Concepts, Approaches and Applications (Edited by Om Rajora), Springer, Cham, pp. 539-585. doi: 10.1007/13836_2018_39 (https://link.springer.com/chapter/10.1007/13836_2018_39)
Bondar E. I., Y. A. Putintseva, N. V. Oreshkova, K. V. Krutovsky 2019 Siberian larch (Larix sibirica Ledeb.) chloroplast genome and development of polymorphic chloroplast markers. BMC Bioinformatics 20(Suppl. 1): 38 doi: 10.1186/s12859-018-2571-x https://doi.org/10.1186/s12859-018-2571-x Published: 5 February 2019 (IF = 3.242/3.213; Q1)
Kuzmin, D. A., S. I. Feranchuk, V. V. Sharov, A. N. Cybin, S. V. Makolov, Y. A. Putintseva, N. V. Oreshkova, K. V. Krutovsky 2019 Stepwise large genome assembly approach: A case of Siberian larch (Larix sibirica Ledeb.). BMC Bioinformatics 20(Suppl. 1): 37 doi: 10.1186/s12859-018-2570-y https://doi.org/10.1186/s12859-018-2570-y Published: 5 February 2019 (IF = 3.242/3.213; Q1)
Semizer-Cuming D., K. V. Krutovsky, Y. N. Baranchikov, E. D. Kjӕr, C. G. Williams 2019 Saving the world’s ash forests calls for international cooperation now. Nature Ecology and Evolution 3(2): 141–144 https://doi.org/10.1038/s41559-018-0761-6 Published online: 10 December 2018 (IF = 12.543/12.561; Q1)
Pettenkofer T.A., K. Burkardt, C. Ammer, T. Vor, R. Finkeldey, M. Müller, K. Krutovsky, B. Vornam, L. Leinemann, O. Gailing 2019 Genetic diversity and differentiation of introduced red oak (Quercus rubra) in Germany in comparison with reference native North American populations. European Journal of Forest Research 138(2): 275–285 Published online: 06 February 2019 https://doi.org/10.1007/s10342-019-01167-5 (IF = 2.451/2.581; Q1)
Semerikov V. L., S. A. Semerikova, Y. A. Putintseva, N. V. Oreshkova, K. V. Krutovsky 2019 Mitochondrial DNA in Siberian conifers indicates multiple postglacial colonization centers. Canadian Journal of Forest Research. 49(8): 875–883 Published on the web 04 March 2019 https://doi.org/10.1139/cjfr-2018-0498 (IF = 1.812/2.162; Q2/Q1)
Mosca E., F. Cruz, J. Gómez Garrido, L. Bianco, C. Rellstab, S. Brodbeck, K. Csilléry, B. Fady, M. Fladung, B. Fussi, D. Gömöry, S. C. González-Martínez, D. Grivet, M. Gut, O. K. Hansen, K. Heer, Z. Kaya, K. V. Krutovsky, B. Kersten, S. Liepelt, L. Opgenoorth, C. Sperisen, K. K. Ullrich, G. G. Vendramin, M. Westergren, B. Ziegenhagen, T. Alioto, F. Gugerli, B. Heinze, M. Höhn, M. Troggio, D. B. Neale, 2019. A reference genome sequence for the European silver fir (Abies alba Mill.): a community-generated genomic resource. G3: Genes Genomes Genetics 9(7): 2039-2049 https://doi.org/10.1534/g3.119.400083 (IF = 2.781/3.026; Q3/Q1)
Kolesnikova A. I., Y. A. Putintseva, E. P. Simonov, V. V. Biriukov, N. V. Oreshkova, I. N. Pavlov, V. V. Sharov, D. A. Kuzmin, J. Anderson, K. V. Krutovsky 2019 Mobile genetic elements explain size variation in the mitochondrial genomes of four closely-related Armillaria species. BMC Genomics 20:351 https://doi.org/10.1186/s12864-019-5732-z doi: 10.1186/s12864-019-5732-z (IF = 3.594/4.093; Q2/Q1)
Lu M., C. A. Loopstra, K. V. Krutovsky 2019 Detecting the genetic basis of local adaptation in loblolly pine (Pinus taeda L.) using whole exome-wide genotyping and an integrative landscape genomics analysis approach. Ecology and Evolution 9(12): 6798-6809 https://doi.org/10.1002/ece3.5225 (IF = 2.392/2.749; Q2/Q1)
Lebedev V. G., Krutovsky K. V., Shestibratov K. A. 2019 …Fell Upas Sits, the Hydra-Tree of Death, or the Phytotoxicity of Trees. Molecules 24(8): 1636; https://doi.org/10.3390/molecules24081636 (IF = 3.267/3.589; Q2/Q1)
Tarieiev A. S., I. Olshanskyi, O. Gailing, K. V. Krutovsky 2019 Taxonomy of dark- and white-barked birches related to Betula pendula Roth and B. pubescens Ehrh. (Betulaceae) in Ukraine based on both morphological traits and DNA markers. Botanical Journal of the Linnean Society 191(1): 142–154 https://doi.org/10.1093/botlinnean/boz031 (IF = 2.076/2.557; Q2/Q1)
Lebedev V. G., N. M. Subbotina, O. P. Maluchenko, K. V. Krutovsky, K. A. Shestibratov (2019) Assessment of genetic diversity in differently colored raspberry cultivars using SSR markers located in flavonoid biosynthesis genes. Agronomy 9(9): 518; https://doi.org/10.3390/agronomy9090518 IF = 2.259; Q1)
Chiveu J.C., M. Mueller, K. V. Krutovsky, K. Kehlenbeck, E. Pawelzik, M. Naumann 2019 Genetic diversity of common guava in Kenya: an underutilized naturalized fruit species. Fruits 74(5): 236–248 https://doi.org/10.17660/th2019/74.5.4 (IF = 0.579/1.054; Q4/Q3)
de Melo Moura C. C., Brambach F., Bado K. J. H., Krutovsky K. V., Kreft H., Tjitrosoedirdjo S. S., Siregar I. Z., Gailing O. Integrating DNA barcoding and traditional taxonomy for the identification of dipterocarps in remnant lowland forests of Sumatra. Plants 8(11), 461; https://doi.org/10.3390/plants8110461 (IF = 2.762; Q1)
Lu M., K. V. Krutovsky, C. A. Loopstra 2019 Predicting adaptive genetic variation of loblolly pine (Pinus taeda L.) populations under projected future climates based on multivariate models. Journal of Heredity 110(7): 857–865 https://doi.org/10.1093/jhered/esz065 (IF = 2.809/2.791; Q2/Q1)
Babushkina E. A., Zhirnova D. F., Belokopytova L. V., Tychkov I. I., Vaganov E. A., Krutovsky K. V. 2019 Response of four tree species to changing climate in a moisture-limited area of South Siberia. Forests 10(11): 999 https://doi.org/10.3390/f10110999 (IF = 2.221/2.484; Q1)
Lebedev V. G., Krutovsky K. V., Shestibratov K. A. 2019 Effect of phosphinothricin on transgenic downy birch (Betula pubescens Ehrh.) containing bar or GS1 genes. Forests 10(12): 1067; https://doi.org/10.3390/f10121067 (IF = 2.221/2.484; Q1)
Yakovlev I. A., D. Gackowski, A. Abakir, M. Viejo, A. Ruzov, R. Oliński, C. G. Fossdal, K. V. Krutovsky 2019 Mass spectrometry reveals the presence of specific set of epigenetic DNA modifications in the Norway spruce genome. Scientific Report 9: 19314 https://www.nature.com/articles/s41598-019-55826-z 10.1038/s41598-019-55826-z (IF = 3.998/4.576; Q1)
RNA-aptamers-As targeted inhibitors of protein functions in plants. Abdeeva IA, Maloshenok LG, Pogorelko GV, Mokrykova MV, Bruskin SA. // J Plant Physiol. 2019 Jan;232:127-129. doi: 10.1016/j.jplph.2018.10.026.
Sequencing and Analysis of Three Mycobacterium tuberculosis Genomes of the B0/N-90 Sublineage.
Zakharevich NV, Zaychikova MV, Shur KV, Bekker OB, Maslov DA, Danilenko VN. // Microbiol Resour Announc. 2019 Sep 26;8(39). pii: e00796-19. doi: 10.1128/MRA.00796-19.
Klimina KM, Batotsyrenova EG, Yunes RA, Gilyaeva EH, Poluektova EU, Kostrova TA, Kudryavtseva AV, Odorskaya MV, Kashuro VA, Kasianov AS, Ivanov MB, Danilenko VN. // BMC Microbiol. 2019 Jul 12;19(1):160. doi: 10.1186/s12866-019-1535-2.
Alekseeva MG, Boyko KM, Nikolaeva AY, Mavletova DA, Rudakova NN, Zakharevich NV, Korzhenevskiy DA, Ziganshin RH, Popov VO, Danilenko VN. // Arch Biochem Biophys. 2019 Aug 15;671:111-122. doi: 10.1016/j.abb.2019.06.008.
Synthesis and antimycobacterial activity of imidazo[1,2-b][1,2,4,5]tetrazines.
Maslov DA, Korotina AV, Shur KV, Vatlin AA, Bekker OB, Tolshchina SG, Ishmetova RI, Ignatenko NK, Rusinov GL, Charushin VN, Danilenko VN. // Eur J Med Chem. 2019 Sep 15;178:39-47. doi: 10.1016/j.ejmech.2019.05.081.
Lysenkova LN, Saveljev OY, Omelchuk OA, Zatonsky GV, Korolev AM, Grammatikova NE, Bekker OB, Danilenko VN, Dezhenkova LG, Mavletova DA, Scherbakov AM, Shchekotikhin AE. // Nat Prod Res. 2019 May 10:1-9. doi: 10.1080/14786419.2019.1608540. [Epub ahead of print]
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Liu J, Shi W, Zhang S, Hao X, Maslov DA, Shur KV, Bekker OB, Danilenko VN, Zhang Y. // Front Microbiol. 2019 Feb 19;10:216. doi: 10.3389/fmicb.2019.00216. eCollection 2019.
Neuropeptides in the microbiota-brain axis and feeding behavior in autism spectrum disorder.
Fetissov SO, Averina OV, Danilenko VN. // Nutrition. 2019 May;61:43-48. doi: 10.1016/j.nut.2018.10.030.
Bekker OB, Vatlin AA, Zakharevich NV, Lysenkova LN, Shchekotikhin AE, Danilenko VN. // Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01531-18. doi: 10.1128/MRA.01531-18. eCollection 2019 Jan.
Lysenkoism Against Genetics: The Meeting of the Lenin All-Union Academy of Agricultural Sciences of August 1948, Its Background, Causes, and Aftermath. Borinskaya SA, Ermolaev AI, Kolchinsky EI.// Genetics. 2019 May;212(1):1-12. doi: 10.1534/genetics.118.301413.
Changes in Biological Pathways During 6,000 Years of Civilization in Europe.
Chekalin E, Rubanovich A, Tatarinova TV, Kasianov A, Bender N, Chekalina M, Staub K, Koepke N, Rühli F, Bruskin S, Morozova I. // Mol Biol Evol. 2019 Jan 1;36(1):127-140. doi: 10.1093/molbev/msy201
Heteroplasmic Variants of Mitochondrial DNA in Atherosclerotic Lesions of Human Aortic Intima.
Sobenin IA, Zhelankin AV, Khasanova ZB, Sinyov VV, Medvedeva LV, Sagaidak MO, Makeev VJ, Kolmychkova KI, Smirnova AS, Sukhorukov VN, Postnov AY, Grechko AV, Orekhov AN. // Biomolecules. 2019 Sep 6;9(9). pii: E455. doi: 10.3390/biom9090455.
Klimina KM, Kasianov AS, Poluektova EU, Emelyanov KV, Voroshilova VN, Zakharevich NV, Kudryavtseva AV, Makeev VJ, Danilenko VN.// PeerJ. 2019 Mar 4;7:e6554. doi: 10.7717/peerj.6554. eCollection 2019.
Odintsova TI, Slezina MP, Istomina EA, Korostyleva TV, Kasianov AS, Kovtun AS, Makeev VJ, Shcherbakova LA, Kudryavtsev AM.// PeerJ. 2019 Jan 8;7:e6125. doi: 10.7717/peerj.6125. eCollection 2019.
The genetic history of admixture across inner Eurasia.
Jeong C, Balanovsky O, Lukianova E, Kahbatkyzy N, Flegontov P, Zaporozhchenko V, Immel A, Wang CC, Ixan O, Khussainova E, Bekmanov B, Zaibert V, Lavryashina M, Pocheshkhova E, Yusupov Y, Agdzhoyan A, Koshel S, Bukin A, Nymadawa P, Turdikulova S, Dalimova D, Churnosov M, Skhalyakho R, Daragan D, Bogunov Y, Bogunova A, Shtrunov A, Dubova N, Zhabagin M, Yepiskoposyan L, Churakov V, Pislegin N, Damba L, Saroyants L, Dibirova K, Atramentova L, Utevska O, Idrisov E, Kamenshchikova E, Evseeva I, Metspalu M, Outram AK, Robbeets M, Djansugurova L, Balanovska E, Schiffels S, Haak W, Reich D, Krause J. // Nat Ecol Evol. 2019 Jun;3(6):966-976. doi: 10.1038/s41559-019-0878-2.
Genome-wide sequence analyses of ethnic populations across Russia.
Zhernakova DV, Brukhin V, Malov S, Oleksyk TK, Koepfli KP, Zhuk A, Dobrynin P, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Gorbunova A, Chernyaeva E, Shevchenko A, Kolchanova S, Komissarov A, Simonov S, Antonik A, Logachev A, Polev DE, Pavlova OA, Glotov AS, Ulantsev V, Noskova E, Davydova TK, Sivtseva TM, Limborska S, Balanovsky O, Osakovsky V, Novozhilov A, Puzyrev V, O'Brien SJ. // Genomics. 2019 Mar 19. pii: S0888-7543(18)30741-9. doi: 10.1016/j.ygeno.2019.03.007.
Wang CC, Reinhold S, Kalmykov A, Wissgott A, Brandt G, Jeong C, Cheronet O, Ferry M, Harney E, Keating D, Mallick S, Rohland N, Stewardson K, Kantorovich AR, Maslov VE, Petrenko VG, Erlikh VR, Atabiev BC, Magomedov RG, Kohl PL, Alt KW, Pichler SL, Gerling C, Meller H, Vardanyan B, Yeganyan L, Rezepkin AD, Mariaschk D, Berezina N, Gresky J, Fuchs K, Knipper C, Schiffels S, Balanovska E, Balanovsky O, Mathieson I, Higham T, Berezin YB, Buzhilova A, Trifonov V, Pinhasi R, Belinskij AB, Reich D, Hansen S, Krause J, Haak W.// Nat Commun. 2019 Feb 4;10(1):590. doi: 10.1038/s41467-018-08220-8.
Ali, H. B. M., A. Abubakari, M. Wiehle, K. V. Krutovsky, 2018 Gene-specific sex-linked genetic markers in date palm (Phoenix dactylifera L.). Genetic Resources and Crop Evolution 65(1): 1-10 https://doi.org/10.1007/s10722-017-0564-7 (IF = 1.294; Q1/2)
Pavlov, I. N., Y. A Litovka, T. V. Ryazanova, N. A. Chuprova, E. A. Litvinova, Y. A. Putintseva, U. Kües, K. V. Krutovsky, 2018 Phylogenetic relationships, pathogenic traits, and wood-destroying properties of Porodaedalea niemelaei M. Fischer isolated in the northern forest limit of Larix gmelinii open woodlands in the permafrost area. Journal of Siberian Federal University. Biology 11(1): 30-48 DOI: 10.17516/1997-1389-0039 http://elib.sfu-kras.ru/bitstream/2311/70290/8/03_Pavlov_15_05.pdf (IF = 0.316; Q4)
Kornienko I.V., Faleeva T.G., Oreshkova N.V., Grigoriev S.E., Grigoreva L.V., Simonov E.P., Kolesnikova A.I., Putintseva Yu.A., Krutovsky K.V. 2018 Complete mitochondrial genome of a woolly mammoth (Mammuthus primigenius) from Maly Lyakhovsky Island (New Siberian Islands, Russia) and its phylogenetic assessment. Mitochondrial DNA Part B. Resources 3(2): 596-598 http://dx.doi.org/10.1080/23802359.2018.1473721 (IF = 0.490; Q4)
Liu, C. L. C., O. Kuchma, K. V. Krutovsky 2018 Mixed-species versus monocultures in plantation forestry: Development, benefits, ecosystem services and perspectives for the future. Global Ecology and Conservation 15: e00419. doi: 10.1016/j.gecco.2018.e00419. https://doi.org/10.1016/j.gecco.2018.e00419 (IF = 1.81; Q2)
Müller M., L. Cuervo-Alarcon, O. Gailing, Rajendra K.C., M. S. Chhetri, S. Seifert, M. Arend, K. V. Krutovsky, R. Finkeldey 2018 Genetic Variation of European Beech Populations and Their Progeny from Northeast Germany to Southwest Switzerland. Forests 9(8): 469. doi:10.3390/f9080469. https://doi.org/10.3390/f9080469 Published: 1 August 2018 (IF = 2.221; Q1)
Nawaz M. A., K. V. Krutovsky, M. Müller, O. Gailing, A. A. Khan, A. Buerkert, M. Wiehle 2018 Morphological and Genetic Diversity of Sea Buckthorn (Hippophae rhamnoides L.) in the Karakoram Mountains of Northern Pakistan. Diversity 10(3): 76; https://doi.org/10.3390/d10030076 Published: 30 July 2018 (IF = 2.047; Q1)
Semerikov, V.L., S.A. Semerikova, Y.A. Putintseva, V. V. Tarakanov, I. V. Tikhonova, A. I. Vidyakin, N.V. Oreshkova, and K.V. Krutovsky, 2018 Colonization history of Scots pine in Eastern Europe and North Asia based on mitochondrial DNA variation. Tree Genetics & Genomes 14:8 https://doi.org/10.1007/s11295-017-1222-0 Published: 8 Jan 2018 (IF = 1.862 Q1)
Cuervo-Alarcon L., M. Arend, M. Müller, C. Sperisen, R. Finkeldey, K. V. Krutovsky 2018 Genetic variation and signatures of natural selection in populations of European beech (Fagus sylvatica L.) along precipitation gradients. Tree Genetics & Genomes 14:84 https://doi.org/10.1007/s11295-018-1297-2 First Online: 30 October 2018 (IF = 1.862 Q1)
Lu M., C. M. Seeve, C. A. Loopstra, K. V. Krutovsky 2018 Exploring the genetic basis of gene transcript abundance and metabolite level in loblolly pine (Pinus taeda L.) using association mapping and network construction. BMC Genetics 19:100 https://doi.org/10.1186/s12863-018-0687-7 Published: 6 November 2018 (IF = 2.469; Q1)
Shestibratov K. A., O. Yu. Baranov, N. M. Subbotina, V. G. Lebedev, S. V. Panteleev, K. V. Krutovsky, V. E. Padutov 2018 Early detection and identification of the main fungal pathogens for resistance evaluation of new genotypes of forest trees. Forests 9(12): 732; https://doi.org/10.3390/f9120732 Published: 23 November 2018 (IF = 2.221; Q1)
Caré O., M. Müller, B. Vornam, A. M. Höltken, K. Kahlert, K. V. Krutovsky, O. Gailing, L. Leinemann 2018 Hight morphological differentiation in crown architecture is weakly reflected in the population genetic structure of German Norway spruce stands. Forests 9(12): 752 doi: 10.3390/f9120752 https://www.mdpi.com/1999-4907/9/12/752/htm Published: Dec 4, 2018 (IF = 2.221; Q1)
Simonov E., A. Lisachov, N. Oreshkova, K. V. Krutovsky 2018 The mitogenome of Elaphe bimaculata (Reptilia: Colubridae) has never been published: a case with the complete mitochondrial genome of E. dione. Acta Herpetologica 13(2): 185-189, Published: Dec 1, 2018 https://doi.org/10.13128/Acta_Herpetol-23394 doi: 10.13128/Acta_Herpetol-23394 (IF = 0.729; Q3)
Tambets K, Yunusbayev B, Hudjashov G, Ilumäe AM, Rootsi S, Honkola T, Vesakoski O, Atkinson Q, Skoglund P, Kushniarevich A, Litvinov S, Reidla M, Metspalu E, Saag L, Rantanen T, Karmin M, Parik J, Zhadanov SI, Gubina M, Damba LD, Bermisheva M, Reisberg T, Dibirova K, Evseeva I, Nelis M, Klovins J, Metspalu A, Esko T, Balanovsky O, Balanovska E, Khusnutdinova EK, Osipova LP, Voevoda M, Villems R, Kivisild T, Metspalu M. Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations. // Genome Biol. 2018 Sep 21;19(1):139. doi: 10.1186/s13059-018-1522-1.
Extraordinary centromeres: differences in the meiotic chromosomes of two rock lizards species Darevskia portschinskii and Darevskia raddei. Spangenberg V, Arakelyan M, Galoyan E, Pankin M, Petrosyan R, Stepanyan I, Grishaeva T, Danielyan F, Kolomiets O. // PeerJ. 2019 Jan 30;7:e6360. doi: 10.7717/peerj.6360. eCollection 2019.
Effects of early social deprivation on epigenetic statuses and adaptive behavior of young children: A study based on a cohort of institutionalized infants and toddlers. Naumova OY, Rychkov SY, Kornilov SA, Odintsova VV, Anikina VО, Solodunova MY, Arintcina IA, Zhukova MA, Ovchinnikova IV, Burenkova OV, Zhukova OV, Muhamedrahimov RJ, Grigorenko EL. // PLoS One. 2019 Mar 26;14(3):e0214285. doi: 10.1371/journal.pone.0214285.
2018
Zolotarenko A, Chekalin E, Piruzian E, Bruskin S. FRA1 mediates the activation of keratinocytes: Implications for the development of psoriatic plaques. // Biochim Biophys Acta Mol Basis Dis. 2018 Sep 14;1864(12):3726-3734. doi: 10.1016/j.bbadis.2018.09.016.
Abdeeva IA, Pogorelko GV, Maloshenok LG, Mokrykova MV, Fursova OV, Bruskin SA. Search for Partner Proteins of A. thaliana Immunophilins Involved in the Control of Plant Immunity. // Molecules. 2018 Apr 19;23(4). pii: E953. doi: 10.3390/molecules23040953.
Khalilipour N, Baranova A, Jebelli A, Heravi-Moussavi A, Bruskin S, Abbaszadegan MR. Familial Esophageal Squamous Cell Carcinoma with damaging rare/germline mutations in KCNJ12/KCNJ18 and GPRIN2 genes. // Cancer Genet. 2018 Feb;221:46-52. doi: 10.1016/j.cancergen.2017.11.011
Vorontsov IE, Fedorova AD, Yevshin IS, Sharipov RN, Kolpakov FA, Makeev VJ, Kulakovskiy IV. Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data. // BMC Res Notes. 2018 Oct 23;11(1):756. doi: 10.1186/s13104-018-3856-x.
Orekhov AN, Oishi Y, Nikiforov NG, Zhelankin AV, Dubrovsky L, Sobenin IA, Kel A, Stelmashenko D, Makeev VJ, Foxx K, Jin X, Kruth HS, Bukrinsky M. Modified Ldl Particles Activate Inflammatory Pathways In Monocyte-Derived Macrophages: Transcriptome Analysis. // Curr Pharm Des. 2018 Sep 11. doi: 10.2174/1381612824666180911120039.
Orekhov AN, Pushkarsky T, Oishi Y, Nikiforov NG, Zhelankin AV, Dubrovsky L, Makeev VJ, Foxx K, Jin X, Kruth HS, Sobenin IA, Sukhorukov VN, Zakiev ER, Kontush A, Le Goff W, Bukrinsky M. HDL activates expression of genes stimulating cholesterol efflux in human monocyte-derived macrophages. // Exp Mol Pathol. 2018 Oct;105(2):202-207. doi: 10.1016/j.yexmp.2018.08.003.
Babenko VN, Afonnikov DA, Ignatieva EV, Klimov AV, Gusev FE, Rogaev EI. Haplotype analysis of APOE intragenic SNPs. // BMC Neurosci. 2018 Apr 19;19(Suppl 1):16. doi: 10.1186/s12868-018-0413-4
Pilsner JR, Shershebnev A, Medvedeva YA, Suvorov A, Wu H, Goltsov A, Loukianov E, Andreeva T, Gusev F, Manakhov A, Smigulina L, Logacheva M, Shtratnikova V, Kuznetsova I, Speranskiy-Podobed P, Burns JS, Williams PL, Korrick S, Lee MM, Rogaev E, Hauser R, Sergeyev O Peripubertal serum dioxin concentrations and subsequent sperm methylome profiles of young Russian adults. // Reprod Toxicol. 2018 Jun;78:40-49. doi: 10.1016/j.reprotox.2018.03.007
Saik OV, Demenkov PS, Ivanisenko TV, Bragina EY, Freidin MB, Goncharova IA, Dosenko VE, Zolotareva OI, Hofestaedt R, Lavrik IN, Rogaev EI, Ivanisenko VA. Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks. // BMC Med Genomics. 2018 Feb 13;11(Suppl 1):15. doi: 10.1186/s12920-018-0331-4.
Gunbin KV, Ponomarenko MP, Suslov VV, Gusev F, Fedonin GG, Rogaev EI. Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation. // Mol Neurobiol. 2018 Mar;55(3):1871-1904. doi: 10.1007/s12035-017-0427-4
Kozlov EN, Martynova EU, Popenko VI, Schal C, Mukha DV. Intracellular Localization of Blattella germanica Densovirus (BgDV1) Capsid Proteins. // Viruses. 2018 Jul 14;10(7). pii: E370. doi: 10.3390/v10070370.
Miteva AS, Gaydukov AE, Shestopalov VI, Balezina OP. Mechanism of P2X7 receptor-dependent enhancement of neuromuscular transmission in pannexin 1 knockout mice. // Purinergic Signal. 2018 Oct 25. doi: 10.1007/s11302-018-9630-7.
Stepchenkova EI, Shiriaeva AA, Pavlov YI. Deletion of the DEF1 gene does not confer UV-immutability but frequently leads to self-diploidization in yeast Saccharomyces cerevisiae. // DNA Repair (Amst). 2018 Oct;70:49-54. doi: 10.1016/j.dnarep.2018.08.026
Zubritskiy A, Medvedeva YA. DNA sequence features in the establishing of H3K27ac. // Version 2. F1000Res. 2018 Feb 8 [revised 2018 Jan 1];7:165. doi:10.12688/f1000research.13441.2. eCollection 2018
Matveevsky S., Ivanitskaya E., Spangenberg V., Bakloushinskaya I., Kolomiets O. Reorganization of the Y Chromosomes Enhances Divergence in Israeli Mole Rats Nannospalax ehrenbergi (Spalacidae, Rodentia): Comparative Analysis of Meiotic and Mitotic Chromosomes. Genes 2018, 9, 272. doi:10.3390/genes9060272. http://www.mdpi.com/2073-4425/9/6/272
Matveevsky S, Kolomiets O, Bogdanov A, Hakhverdyan M, Bakloushinskaya I. Chromosomal Evolution in Mole Voles Ellobius (Cricetidae, Rodentia): Bizarre Sex Chromosomes, Variable Autosomes and Meiosis. // Genes (Basel). 2017. 8(11): E306. IF=3,6
Matveevsky SN, Pavlova SV, Atsaeva MM, Searle JB, Kolomiets OL. Dual mechanism of chromatin remodeling in the common shrew sex trivalent (XY1Y2). // Comp Cytogenet. 2017. 11(4):727-745. IF - 1,151
Blagodatskikh KA, Kramarov VM, Barsova EV, Garkovenko AV, Shcherbo DS, Shelenkov AA, Ustinova VV, Tokarenko MR, Baker SC, Kramarova TV, Ignatov KB. Improved DOP-PCR (iDOP-PCR): A robust and simple WGA method for efficient amplification of low copy number genomic DNA. // PLoS One. 2017 Sep 11;12(9):e0184507. doi: 10.1371/journal.pone.0184507 Импакт фактор - 2.806
Bondar N, Bryzgalov L, Ershov N, Gusev F, Reshetnikov V, Avgustinovich D, Tenditnik M, Rogaev E, Merkulova T. Molecular Adaptations to Social Defeat Stress and Induced Depression in Mice. // Mol Neurobiol. 2017 May 12. doi: 10.1007/s12035-017-0586-3.
Lukiw WJ, Rogaev EI. Genetics of Aggression in Alzheimer's Disease (AD). // Front Aging Neurosci. 2017 Apr 10;9:87. doi: 10.3389/fnagi.2017.00087.
Zolotarenko A, Chekalin E, Mehta R, Baranova A, Tatarinova TV, Bruskin S. Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments. // Methods Mol Biol. 2017;1613:355-370. doi: 10.1007/978-1-4939-7027-8_14.
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Genomic evidence for the Pleistocene and recent population history of Native Americans. Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, Cornejo OE, Moreno-Mayar JV, Korneliussen TS, Pierre T, Rasmussen M, Campos PF, Damgaard Pde B, Allentoft ME, Lindo J, Metspalu E, Rodríguez-Varela R, Mansilla J, Henrickson C, Seguin-Orlando A, Malmström H, Stafford T Jr, Shringarpure SS, Moreno-Estrada A, Karmin M, Tambets K, Bergström A, Xue Y, Warmuth V, Friend AD, Singarayer J, Valdes P, Balloux F, Leboreiro I, Vera JL, Rangel-Villalobos H, Pettener D, Luiselli D, Davis LG, Heyer E, Zollikofer CP, Ponce de León MS, Smith CI, Grimes V, Pike KA, Deal M, Fuller BT, Arriaza B, Standen V, Luz MF, Ricaut F, Guidon N, Osipova L, Voevoda MI, Posukh OL, Balanovsky O, Lavryashina M, Bogunov Y, Khusnutdinova E, Gubina M, Balanovska E, Fedorova S, Litvinov S, Malyarchuk B, Derenko M, Mosher MJ, Archer D, Cybulski J, Petzelt B, Mitchell J, Worl R, Norman PJ, Parham P, Kemp BM, Kivisild T, Tyler-Smith C, Sandhu MS, Crawford M, Villems R, Smith DG, Waters MR, Goebel T, Johnson JR, Malhi RS, Jakobsson M, Meltzer DJ, Manica A, Durbin R, Bustamante CD, Song YS, Nielsen R, Willerslev E. // Science. 2015 Aug 21;349(6250):aab3884.
Genetic Heritage of the Balto-Slavic Speaking Populations: A Synthesis of Autosomal, Mitochondrial and Y-Chromosomal Data. Kushniarevich A, Utevska O, Chuhryaeva M, Agdzhoyan A, Dibirova K, Uktveryte I, Möls M, Mulahasanovic L, Pshenichnov A, Frolova S, Shanko A, Metspalu E, Reidla M, Tambets K, Tamm E, Koshel S, Zaporozhchenko V, Atramentova L, Kučinskas V, Davydenko O, Goncharova O, Evseeva I, Churnosov M, Pocheshchova E, Yunusbayev B, Khusnutdinova E, Marjanović D, Rudan P, Rootsi S, Yankovsky N, Endicott P, Kassian A, Dybo A; Genographic Consortium, Tyler-Smith C, Balanovska E, Metspalu M, Kivisild T, Villems R, Balanovsky O. // PLoS One. 2015 Sep 2;10(9):e0135820
Genome-wide signatures of male-mediated migration shaping the Indian gene pool. ArunKumar G, Tatarinova TV, Duty J, Rollo D, Syama A, Arun VS, Kavitha VJ, Triska P, Greenspan B, Wells RS, Pitchappan R; Genographic Consortium. // J Hum Genet. 2015 May 21. doi: 10.1038/jhg.2015.51.
The genetic legacy of the expansion of Turkic-speaking nomads across Eurasia. Yunusbayev B, Metspalu M, Metspalu E, Valeev A, Litvinov S, Valiev R, Akhmetova V, Balanovska E, Balanovsky O, Turdikulova S, Dalimova D, Nymadawa P, Bahmanimehr A, Sahakyan H, Tambets K, Fedorova S, Barashkov N, Khidiyatova I, Mihailov E, Khusainova R, Damba L, Derenko M, Malyarchuk B, Osipova L, Voevoda M, Yepiskoposyan L, Kivisild T, Khusnutdinova E, Villems R. // PLoS Genet. 2015 Apr 21;11(4):e1005068. doi: 10.1371/journal.pgen.1005068. eCollection 2015 Apr.
Deep phylogenetic analysis of haplogroup G1 provides estimates of SNP and STR mutation rates on the human Y-chromosome and reveals migrations of Iranic speakers. Balanovsky O, Zhabagin M, Agdzhoyan A, Chukhryaeva M, Zaporozhchenko V, Utevska O, Highnam G, Sabitov Z, Greenspan E, Dibirova K, Skhalyakho R, Kuznetsova M, Koshel S, Yusupov Y, Nymadawa P, Zhumadilov Z, Pocheshkhova E, Haber M, A Zalloua P, Yepiskoposyan L, Dybo A, Tyler-Smith C, Balanovska E. // PLoS One. 2015 Apr 7;10(4):e0122968.
A recent bottleneck of Y chromosome diversity coincides with a global change in culture. Karmin M, Saag L, Vicente M, Wilson Sayres MA, Järve M, Talas UG, Rootsi S, Ilumäe AM, Mägi R, Mitt M, Pagani L, Puurand T, Faltyskova Z, Clemente F, Cardona A, Metspalu E, Sahakyan H, Yunusbayev B, Hudjashov G, DeGiorgio M, Loogväli EL, Eichstaedt C, Eelmets M, Chaubey G, Tambets K, Litvinov S, Mormina M, Xue Y, Ayub Q, Zoraqi G, Korneliussen TS, Akhatova F, Lachance J, Tishkoff S, Momynaliev K, Ricaut FX, Kusuma P, Razafindrazaka H, Pierron D, Cox MP, Sultana GN, Willerslev R, Muller C, Westaway M, Lambert D, Skaro V, Kovačevic L, Turdikulova S, Dalimova D, Khusainova R, Trofimova N, Akhmetova V, Khidiyatova I, Lichman DV, Isakova J, Pocheshkhova E, Sabitov Z, Barashkov NA, Nymadawa P, Mihailov E, Seng JW, Evseeva I, Migliano AB, Abdullah S, Andriadze G, Primorac D, Atramentova L, Utevska O, Yepiskoposyan L, Marjanovic D, Kushniarevich A, Behar DM, Gilissen C, Vissers L, Veltman JA, Balanovska E, Derenko M, Malyarchuk B, Metspalu A, Fedorova S, Eriksson A, Manica A, Mendez FL, Karafet TM, Veeramah KR, Bradman N, Hammer MF, Osipova LP, Balanovsky O, Khusnutdinova EK, Johnsen K, Remm M, Thomas MG, Tyler-Smith C, Underhill PA, Willerslev E, Nielsen R, Metspalu M, Villems R, Kivisild T. // Genome Res. 2015 Apr;25(4):459-66.
Diacylglyceryltrimethylhomoserine content and gene expression changes triggered by phosphate deprivation in the mycelium of the basidiomycete Flammulina velutipes. Senik SV, Maloshenok LG, Kotlova ER, Shavarda AL, Moiseenko KV, Bruskin SA, Koroleva OV, Psurtseva NV. // Phytochemistry. 2015 Sep;117:34-42.
Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal. Papatsenko D, Darr H, Kulakovskiy IV, Waghray A, Makeev VJ, MacArthur BD, Lemischka IR. // Stem Cell Reports. 2015 Aug 11;5(2):207-20.
Phenomenon of individual difference in human monocyte activation. Orekhov AN, Nikiforov NG, Elizova NV, Ivanova EA, Makeev VJ. // Exp Mol Pathol. 2015 Aug;99(1):151-4.
Protasova MS, Grigorenko AP, Tyazhelova TV, Andreeva TV, Reshetov DA, Gusev FE, Laptenko AE, Kuznetsova IL, Goltsov AY, Klyushnikov SA, Illarioshkin SN, Rogaev EI. Whole-genome sequencing identifies a novel ABCB7 gene mutation for X-linked congenital cerebellar ataxia in a large family of Mongolian ancestry. // Eur J Hum Genet. 2015 Aug 5. doi: 10.1038/ejhg.2015.139.
Shepelev VA, Uralsky LI, Alexandrov AA, Yurov YB, Rogaev EI, Alexandrov IA. Annotation of suprachromosomal families reveals uncommon types of alpha satellite organization in pericentromeric regions of hg38 human genome assembly. // Genom Data. 2015 Sep 1;5:139-146.
Bai G, Cheung I, Shulha HP, Coelho JE, Li P, Dong X, Jakovcevski M, Wang Y, Grigorenko A, Jiang Y, Hoss A, Patel K, Zheng M, Rogaev E, Myers RH, Weng Z, Akbarian S, Chen JF. Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains. // Hum Mol Genet. 2015 Mar 1;24(5):1441-56.
Rykalina VN, Shadrin AA, Amstislavskiy VS, Rogaev EI, Lehrach H, Borodina TA. Exome sequencing from nanogram amounts of starting DNA: comparing three approaches. // vPLoS One. 2014 Jul 3;9(7):e101154.
Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes. Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN. Microb Ecol. 2015 Apr 17. [Epub ahead of print]
Discovery of molecular markers to discriminate corneal endothelial cells in the human body. Yoshihara M, Ohmiya H, Hara S, Kawasaki S; FANTOM consortium (Makeev V et al.), Hayashizaki Y, Itoh M, Kawaji H, Tsujikawa M, Nishida K. PLoS One. 2015 Mar 25;10(3):e0117581.
The statistical geometry of transcriptome divergence in cell-type evolution and cancer. Liang C; FANTOM Consortium (Makeev V et al.) , Forrest AR, Wagner GP. // Nat Commun. 2015 Jan 14;6:6066.
Effects of genetic drift in a small population of Atlantic cod (Gadus morhua kildinensis Derjugin) landlocked in a meromictic lake: genetic variation and conservation measures. Zhivotovsky, L. A., Teterina, A. A., Mukhina, N. V., Stroganov, A. N., Rubtsova, G. A., & Afanasiev, K. I. // Conservation Genetics, 1-10. DOI: 10.1007/s10592-015-0774-5
Efficiency of the inbreeding coefficient f and other estimators in detecting null alleles, as revealed by empirical data of locus oke3 across 65 populations of chum salmon Oncorhynchus keta. Zhivotovsky LA, Kordicheva SY, Shaikhaev EG, Rubtsova GA, Afanasiev KI, Shitova MV, Fuller SA, Shaikhaev GO, Gharrett AJ.// J Fish Biol. 2015 Jan;86(1):402-8
Functional analysis of the type II toxin-antitoxin systems of the MazEF and RelBE families in Bifidobacterium longum subsp. infantis ATCC 15697. Averina O, Alekseeva M, Shkoporov A, Danilenko V. // Anaerobe. 2015 Jul 23;35(Pt B):59-67.
Draft Genome Sequences of Two Pyrazinamide-Resistant Clinical Isolates, Mycobacterium tuberculosis 13-4152 and 13-2459. Maslov DA, Shur KV, Bekker OB, Zakharevich NV, Zaichikova MV, Klimina KM, Smirnova TG, Zhang Y, Chernousova LN, Danilenko VN. // Genome Announc. 2015 Jul 2;3(4). pii: e00758-15.
Draft Genome Sequences of Bifidobacterium angulatum GT102 and Bifidobacterium adolescentis 150: Focusing on the Genes Potentially Involved in the Gut-Brain Axis. Dyachkova MS, Klimina KM, Kovtun AS, Zakharevich NV, Nezametdinova VZ, Averina OV, Danilenko VN. // Genome Announc. 2015 Jul 2;3(4). pii: e00709-15.
Resistance to pyrazinamide in Russian Mycobacterium tuberculosis isolates: pncA sequencing versus Bactec MGIT 960. Maslov DA, Zaĭchikova MV, Chernousova LN, Shur KV, Bekker OB, Smirnova TG, Larionova EE, Andreevskaya SN, Zhang Y, Danilenko VN. // Tuberculosis (Edinb). 2015 Sep;95(5):608-12.
Draft Genome Sequence of Mycobacterium tuberculosis Strain E186hv of Beijing B0/W Lineage with Reduced Virulence. Shur KV, Klimina KM, Zakharevich NV, Maslov DA, Bekker OB, Zaychikova MV, Kamaev EY, Kravchenko MA, Skornyakov SN, Zhang Y, Danilenko VN. // Genome Announc. 2015 May 7;3(3). pii: e00403-15.
Draft Genome Sequences of Lactobacillus plantarum Strain 90sk and Lactobacillus brevis Strain 15f: Focusing on Neurotransmitter Genes. Yunes RA, Klimina KM, Emelyanov KV, Zakharevich NV, Poluektova EU, Danilenko VN. // Genome Announc. 2015 Apr 16;3(2). pii: e00261-15.
Expression of the toxin-antitoxin genes yefMLrh , yoeBLrh in human Lactobacillus rhamnosus isolates. Krügel H, Klimina KM, Mrotzek G, Tretyakov A, Schöfl G, Saluz HP, Brantl S, Poluektova EU, Danilenko VN. // J Basic Microbiol. 2015 Aug;55(8):982-91.
FoF1-ATP synthase of Streptomyces fradiae ATCC 19609: structural, biochemical, and functional characterization. Alekseeva MG, Mironcheva TA, Mavletova DA, Elizarov SM, Zakharevich NV, Danilenko VN. // Biochemistry (Mosc). 2015 Mar;80(3):296-309
The association of PLA2G2A single nucleotide polymorphisms with type IIa secretory phospholipase A2 level but not its activity in patients with stable coronary heart disease. Shuvalova YA, Khasanova ZB, Kaminnaya VI, Samoilova EV, Korotaeva AA, Rubanovich AV, Kaminnyi AI. // Gene. 2015 Jun 10;564(1):29-34. IF 2.082
Verification of the Chromosome Region 9q21 Association with Pelvic Organ Prolapse Using RegulomeDB Annotations. Khadzhieva MB, Kolobkov DS, Kamoeva SV, Ivanova AV, Abilev SK, Salnikova LE. // Biomed Res Int. 2015;2015:837904.
Germline and somatic genetic predictors of pathological response in neoadjuvant settings of rectal and esophageal cancers: systematic review and meta-analysis. Salnikova LE, Kolobkov DS.// Pharmacogenomics J. 2015 Jun 30.
Association of the apolipoprotein E 2 allele with concurrent occurrence of endometrial hyperplasia and endometrial carcinoma. Ivanova TI, Krikunova LI, Ryabchenko NI, Mkrtchyan LS, Khorokhorina VA, Salnikova LE. // Oxid Med Cell Longev. 2015;2015:593658.
Clinical associations of host genetic variations in the genes of cytokines in critically ill patients. Belopolskaya OB, Smelaya TV, Moroz VV, Golubev AM, Salnikova LE. // Clin Exp Immunol. 2015 Jun;180(3):531-41.
Poliakov, E., Cooper, D. N., Stepchenkova, E. I., & Rogozin, I. B. (2015). Genetics in Genomic Era. Genetics research international. dx.doi.org/10.1155/2015/364960
Badaeva, E. D., Keilwagen, J., Knüpffer, H., Waßermann, L., Dedkova, O. S., Mitrofanova, O. P., ... & Kilian, B. (2015). Chromosomal Passports Provide New Insights into Diffusion of Emmer Wheat. PloS one, 10(5), e0128556.
Prepubertal Serum Concentrations of Organochlorine Pesticides and Age at Sexual Maturity in Russian Boys. Lam T, Williams PL, Lee MM, Korrick SA, Birnbaum LS, Burns JS, Sergeyev O, Revich B, Altshul LM, Patterson DG Jr, Hauser R. // Environ Health Perspect. 2015 May 22
Zhivotovsky L.A. Relationships Between Wright’s FST and FISStatistics in a Context of Wahlund Effect // J. Hered. 2015 (published online 17/04/2015) - IF 1.969
Dasgupta M.G., Dharanishanthi V., Agarwal I., Krutovsky K.V.Development of genetic markers in Eucalyptus species by target enrichment and exome sequencing // PLoS One. 2015.10(1): e0116528. doi:10.1371/journal.pone.011652 (http://www.plosone.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pone.0116528&representation=PDF)
Bogomazova AN, Vassina EM, Goryachkovskaya TN, Popik VM, Sokolov AS, Kolchanov NA, Lagarkova MA, Kiselev SL, Peltek SE. No DNA damage response and negligible genome-wide transcriptional changes in human embryonic stem cells exposed to terahertz radiation. Sci Rep. 2015 Jan 13;5:7749. doi: 10.1038/srep07749
Bogomazova AN, Lagarkova MA, Panova AV, Nekrasov ED, Kiselev SL. Reactivation of Х chromosome upon reprogramming leads to changes in the replication pattern and 5hmC accumulation. Chromosoma. 2014 Mar;123(1-2):117-28
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Bai G, Cheung I, Shulha HP, Coelho JE, Li P, Dong X, Jakovcevski M, Wang Y, Grigorenko A, Jiang Y, Hoss A, Patel K, Zheng M, Rogaev E, Myers RH, Weng Z, Akbarian S, Chen JF. Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains. Hum Mol Genet. 2014 Dec 5. pii: ddu561.
Veytsman B, Wang L, Cui T, Bruskin S, Baranova A. Distance-based classifiers as potential diagnostic and prediction tools for human diseases. BMC Genomics. 2014 Dec 19;15 Suppl 12:S10.
Pogorelko GV, Mokryakova M, Fursova OV, Abdeeva I, Piruzian ES, Bruskin SA. Characterization of three Arabidopsis thaliana immunophilin genes involved in the plant defense response against Pseudomonas syringae. Gene. 2014 Mar 15;538(1):12-22.
Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. Gene. 2014 Apr 25;540(1):1-10.
Khadzhieva MB, Kamoeva SV, Chumachenko AG, Ivanova AV, Volodin IV, Vladimirov IS, Abilev SK, Salnikova LE. Fibulin-5 (FBLN5) gene polymorphism is associated with pelvic organ prolapse. Maturitas. 2014 Aug;78(4):287-92
Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN. Complete Genome Sequence of Bifidobacterium longum GT15: Unique Genes for Russian Strains. Genome Announc. 2014 Dec 18;2(6).
Bekker OB, Klimina KM, Vatlin AA, Zakharevich NV, Kasianov AS, Danilenko VN. Draft Genome Sequence of Streptomyces fradiae ATCC 19609, a Strain Highly Sensitive to Antibiotics. Genome Announc. 2014 Dec 4;2(6).
Lysenkova LN, Turchin KF, Korolev AM, Danilenko VN, Bekker OB, Dezhenkova LG, Shtil AA, Preobrazhenskaya MN. Study on retroaldol degradation products of antibiotic oligomycin A. J Antibiot (Tokyo). 2014 Feb;67(2):153-8
Knappskog S, Gansmo LB, Dibirova K, Metspalu A, Cybulski C, Peterlongo P, Aaltonen L, Vatten L, Romundstad P, Hveem K, Devilee P, Evans GD, Lin D, Van Camp G, Manolopoulos VG, Osorio A, Milani L, Ozcelik T, Zalloua P, Mouzaya F, Bliznetz E, Balanovska E, Pocheshkova E, Kučinskas V, Atramentova L, Nymadawa P, Titov K, Lavryashina M, Yusupov Y, Bogdanova N, Koshel S, Zamora J, Wedge DC, Charlesworth D, Dörk T, Balanovsky O, Lønning PE. Population distribution and ancestry of the cancer protective MDM2 SNP285 (rs117039649). Oncotarget. 2014 Sep 30;5(18):8223-34.
Krutovsky K.V., Tretyakova I.N., Oreshkova N.V., Pak M.E., Kvitko O.V., Vaganov E.A. Somaclonal variation of haploid in vitro tissue culture obtained from Siberian larch (Larix sibiricaLedeb.) megagametophytes for whole genome de novosequencing // In Vitro Cellular and Developmental Biology – Plant. 2014. V. 50. № 5. P. 655-664.
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Zhivotovsky L.A., S.Yu. Kordicheva, E.G. Shaikhaev, G.A. Rubtsova, K.I. Afanasiev, M.V. Shitova, S.A. Fuller, G.O. Shaikhaev, A.J. Gharrett. 2014. Efficiency of the inbreeding coefficient f and other estimators in detecting null alleles, as revealed by empirical data of locus Oke3 across 65 populations of chum salmon, Oncorhynchus keta. Journal of Fish Biology (doi: 10.1111/jfb.12568) - IF 1.734
Zhivotovsky L.A., A.A. Yurchenko, V.D. Nikitin, S.N. Safronov, M.V. Shitova, S.F. Zolotukhin, S.S. Makeev, S. Weiss, P.S. Rand, A.Yu. Semenchenko. 2014. Eco-geographic units, population hierarchy, and a two-level conservation strategy with reference to a critically endangered salmonid, Sakhalin taimen Parahucho perryi. Conservation Genetics (doi: 10.1007/s10592-014-0670-4) - IF 1.846
Pavlova G.V., Vergun A.A., Rybalkina E.Yu., Butovskaya P.R. , Ryskov A.P. Identification of Structural DNA Variations in Human Cell Cultures after Long-Term Passage.// Cell Cycle. 2015, Vol.14, Issue 1, doi. org/10.4161/15384101.2014.974427. IF 5.0
Slavokhotova AA, Rogozhin EA, Musolyamov AK, Andreev YA, Oparin PB, Berkut AA, Vassilevski AA, Egorov TA, Grishin EV, Odintsova TI. Novel antifungal α-hairpinin peptide from Stellaria media seeds: structure, biosynthesis, gene structure and evolution. Plant Mol Biol. 2014. V. 84(1-2). P. 189-202. IF 4.072
Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Structure of the yellow sac spider Cheiracanthium punctorium genes provides clues to evolution of insecticidal two-domain knottin toxins. Insect Mol Biol. 2014. V. 23(4). P. 527-38. IF 2.976
Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Genes and evolution of two-domain toxins from lynx spider venom. FEBS Lett. 2014. V. 588(5). P. 740-5. IF 3.341
Berkut AA, Usmanova DR, Peigneur S, Oparin PB, Mineev KS, Odintsova TI, Tytgat J, Arseniev AS, Grishin EV, Vassilevski AA. Structural Similarity between Defense Peptide from Wheat and Scorpion Neurotoxin Permits Rational Functional Design. J Biol Chem. 2014. V. 289(20). P. 14331-40. IF 4.6
Slavokhotova AA, Naumann TA, Price NP, Rogozhin EA, Andreev YA, Vassilevski AA, Odintsova TI. Novel mode of action in plant defense peptides: hevein-like antimicrobial peptides from wheat inhibit fungal metalloproteases. FEBS J. 2014. V. 281(20). P. 4754-64. IF 3.986
Zvyagin I.V. , Pogorelyy M.V., Ivanova M. E. , Komech M. E. , Shugay M. , Bolotin D.A. , Shelenkov A.A., Kurnosov A.A. , Staroverov D.B. , Chudakov D.M. , Lebedev Y.B., Mamedov I.Z. Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing. PNAS, 2014, 111(16):5980-5, doi: 10.1073/pnas.1319389111 - IF 9.809 (лаб. функциональной геномики)
Ignatov KB, Barsova EV, Fradkov AF, Blagodatskikh KA, Kramarova TV, Kramarov VM. A strong strand displacement activity of thermostable DNA polymerase markedly improves the results of DNA amplification. Biotechniques. 2014 Aug 1;57(2):81-7. IF - 2.754 (лаб. анализа генома)
Статья поставлена журналом Biotechniques на первое место в обзоре достижений в области ПЦР за 2014 год BioTechniques - PCR: 2014 Year in Review
Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, Nordenfelt S, Li H, de Filippo C, Prüfer K, Sawyer S, Posth C, Haak W, Hallgren F, Fornander E, Rohland N, Delsate D, Francken M, Guinet JM, Wahl J, Ayodo G, Babiker HA, Bailliet G, Balanovska E, Balanovsky O, Barrantes R, Bedoya G, Ben-Ami H, Bene J, Berrada F, Bravi CM, Brisighelli F, Busby GB, Cali F, Churnosov M, Cole DE, Corach D, Damba L, van Driem G, Dryomov S, Dugoujon JM, Fedorova SA, Gallego Romero I, Gubina M, Hammer M, Henn BM, Hervig T, Hodoglugil U, Jha AR, Karachanak-Yankova S, Khusainova R, Khusnutdinova E, Kittles R, Kivisild T, Klitz W, Kučinskas V, Kushniarevich A, Laredj L, Litvinov S, Loukidis T, Mahley RW, Melegh B, Metspalu E, Molina J, Mountain J, Näkkäläjärvi K, Nesheva D, Nyambo T, Osipova L, Parik J, Platonov F, Posukh O, Romano V, Rothhammer F, Rudan I, Ruizbakiev R, Sahakyan H, Sajantila A, Salas A, Starikovskaya EB, Tarekegn A, Toncheva D, Turdikulova S, Uktveryte I, Utevska O, Vasquez R, Villena M, Voevoda M, Winkler CA, Yepiskoposyan L, Zalloua P, Zemunik T, Cooper A, Capelli C, Thomas MG, Ruiz-Linares A, Tishkoff SA, Singh L, Thangaraj K, Villems R, Comas D, Sukernik R, Metspalu M, Meyer M, Eichler EE, Burger J, Slatkin M, Pääbo S, Kelso J, Reich D, Krause J. Ancient human genomes suggest three ancestral populations for present-day Europeans. // Nature. 2014 Sep 18;513(7518):409-13. doi: 10.1038/nature13673. – IF F 42.351
Holmes MV, Dale CE, Zuccolo L, Silverwood RJ, Guo Y, Ye Z, Prieto-Merino D, Dehghan A, Trompet S, Wong A, Cavadino A, Drogan D, Padmanabhan S, Li S, Yesupriya A, Leusink M, Sundstrom J, Hubacek JA, Pikhart H, Swerdlow DI, Panayiotou AG, Borinskaya SA, Finan C, Shah S, Kuchenbaecker KB, Shah T, Engmann J, Folkersen L, Eriksson P, Ricceri F, Melander O, Sacerdote C, Gamble DM, Rayaprolu S, Ross OA, McLachlan S, Vikhireva O, Sluijs I, Scott RA, Adamkova V, Flicker L, Bockxmeer FM, Power C, Marques-Vidal P, Meade T, Marmot MG, Ferro JM, Paulos-Pinheiro S, Humphries SE, Talmud PJ, Mateo Leach I, Verweij N, Linneberg A, Skaaby T, Doevendans PA, Cramer MJ, Harst Pv, Klungel OH, Dowling NF, Dominiczak AF, Kumari M, Nicolaides AN, Weikert C, Boeing H, Ebrahim S, Gaunt TR, Price JF, Lannfelt L, Peasey A, Kubinova R, Pajak A, Malyutina S, Voevoda MI, Tamosiunas A, Maitland-van der Zee AH, Norman PE, Hankey GJ, Bergmann MM, Hofman A, Franco OH, Cooper J, Palmen J, Spiering W, Jong PA, Kuh D, Hardy R, Uitterlinden AG, Ikram MA, Ford I, Hyppönen E, Almeida OP, Wareham NJ, Khaw KT, Hamsten A, Husemoen LL, Tjønneland A, Tolstrup JS, Rimm E, Beulens JW, Verschuren WM, Onland-Moret NC, Hofker MH, Wannamethee SG, Whincup PH, Morris R, Vicente AM, Watkins H, Farrall M, Jukema JW, Meschia J, Cupples LA, Sharp SJ, Fornage M, Kooperberg C, LaCroix AZ, Dai JY, Lanktree MB, Siscovick DS, Jorgenson E, Spring B, Coresh J, Li YR, Buxbaum SG, Schreiner PJ, Ellison RC, Tsai MY, Patel SR, Redline S, Johnson AD, Hoogeveen RC, Hakonarson H, Rotter JI, Boerwinkle E, Bakker PI, Kivimaki M, Asselbergs FW, Sattar N, Lawlor DA, Whittaker J, Davey Smith G, Mukamal K, Psaty BM, Wilson JG, Lange LA, Hamidovic A, Hingorani AD, Nordestgaard BG, Bobak M, Leon DA, Langenberg C, Palmer TM, Reiner AP, Keating BJ, Dudbridge F, Casas JP; InterAct Consortium. Association between alcohol and cardiovascular disease: Mendelian randomisation analysis based on individual participant data // BMJ. 2014 Jul 10;349:g4164. doi: 10.1136/bmj.g4164. Free Full Text – IF 16.378
Подробнее
Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB. The ctenophore genome and the evolutionary origins of neural systems. // Nature. 2014 Jun 5;510(7503):109-14. – IF 42.351 ПРЕСС-РЕЛИЗ
Elhaik E, Tatarinova T, Chebotarev D, Piras IS, Maria Calò C, De Montis A, Atzori M, Marini M, Tofanelli S, Francalacci P, Pagani L, Tyler-Smith C, Xue Y, Cucca F, Schurr TG, Gaieski JB, Melendez C, Vilar MG, Owings AC, Gómez R, Fujita R, Santos FR, Comas D, Balanovsky O, Balanovska E, Zalloua P, Soodyall H, Pitchappan R, Ganeshprasad A, Hammer M, Matisoo-Smith L, Wells RS; Genographic Consortium. // Nat Commun. 2014 Apr 29;5:3513. doi: 10.1038/ncomms4513. - IF 10.742
FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Lassmann T, Itoh M, Summers KM, Suzuki H, Daub CO, Kawai J, Heutink P, Hide W, Freeman TC, Lenhard B, Bajic VB, Taylor MS, Makeev VJ, Sandelin A, Hume DA, Carninci P, Hayashizaki Y. A promoter-level mammalian expression atlas. // Nature. 2014 Mar 27;507(7493):462-70. doi: 10.1038/nature13182. – IF 42.351 ПРЕСС-РЕЛИЗ
Salnikova L.E. Clinicopathologic Characteristics of Brain Tumors Are Associated with the Presence and Patterns of TP53 Mutations: Evidence from the IARC TP53 Database. // Neuromolecular Med. 2014 Jan 31. [Epub ahead of print] DOI: 10.1007/s12017-014-8290-1 – IF 4.492
Salnikova LE, Smelaya TV, Vesnina IN, Golubev AM, Moroz VV. Genetic Susceptibility to Nosocomial Pneumonia, Acute Respiratory Distress Syndrome and Poor Outcome in Patients at Risk of Critical Illness. // Inflammation 2014; 37(2):295-305. DOI: 10.1007/s10753-013-9740-x – IF 2.457
Khadzhieva MB, Lutcenko NN, Volodin IV, Morozova KV, Salnikova LE. Association of Oxidative Stress Related Genes with Idiopathic Recurrent Miscarriage. // Free Radical Research. 2014;48(5):534-541. DOI:10.3109/10715762.2014.891735 – IF 3.279
The FANTOM Consortium and the RIKEN PMI and CLST (DGT), в том числе сотрудники ИОГен Иван Кулаковский, Юлия Медведева, Александр Фаворов, Артем Касьянов, Илья Воронцов и Всеволод Макеев: A promoter-level mammalian expression atlas // Nature 507, 462–470 (27 March 2014) -- IF F 42.351
Lomakin YA, Zakharova MY, Stepanov AV, Dronina MA, Smirnov IV, Bobik TV, Pyrkov AY, Tikunova NV, Sharanova SN, Boitsov VM, Vyazmin SY, Kabilov MR, Tupikin AE, Krasnov AN, Bykova NA, Medvedeva YA, Fridman MV, Favorov AV, Ponomarenko NA, Dubina MV, Boyko AN, Vlassov VV, Belogurov Jr AA, Gabibov AG. Heavy-light chain interrelations of MS-associated immunoglobulins probed by deep sequencing and rational variation.// Mol Immunol. 2014 Feb 14. pii: S0161-5890(14)00023-6. doi: 10.1016/j.molimm.2014.01.013 -- IF 2.645
Medvedeva YA, Khamis AM, Kulakovskiy IV, Ba-Alawi W, Bhuyan MS, Kawaji H, Lassmann T, Harbers M, Forrest AR, Bajic VB; FANTOM consortium. Effects of cytosine methylation on transcription factor binding sites. // BMC Genomics. 2014 Mar 26;15(1):119. doi: 10.1186/1471-2164-15-119. -- IF 4.40
Levitsky VG, Kulakovskiy IV, Ershov NI, Oschepkov DY, Makeev VJ, Hodgman TC, Merkulova TI. Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data. BMC Genomics. 2014 Jan 29;15(1):80. -- IF 4.40
Underhill PA, Poznik GD, Rootsi S, Järve M, Lin AA, Wang J, Passarelli B, Kanbar J, Myres NM, King RJ, Di Cristofaro J, Sahakyan H, Behar DM, Kushniarevich A, Sarac J, Saric T, Rudan P, Pathak AK, Chaubey G, Grugni V, Semino O, Yepiskoposyan L, Bahmanimehr A, Farjadian S, Balanovsky O, Khusnutdinova EK, Herrera RJ, Chiaroni J, Bustamante CD, Quake SR, Kivisild T, Villems R. The phylogenetic and geographic structure of Y-chromosome haplogroup R1a. // Eur J Hum Genet. 2014 Mar 26. doi: 10.1038/ejhg.2014.50 -- IF 4.319
Gogleva AA, Gelfand MS, Artamonova II. Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs. // BMC Genomics. 2014 Mar 17;15:202. IF - 4.041
Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. // Gene. 2014 ;540(1):1-10. doi: 10.1016/j.gene.2014.01.068 -- IF 2.341
Nezametdinova V.Z., Zakharevich N.V., Alekseeva M.G., Mavletova D.A., Averina O.A., Danilenko V.N. Identification and characterization of the eukaryote-like serine/threonine protein kinases in Bifidobacterium. Archives of Microbiology. 2014, V. 196, Issue 2, pp 125-136. -- IF 1.905
Thompson PM, Stein JL, Medland SE, Hibar DP, Vasquez AA, Renteria ME, Toro R, Jahanshad N, Schumann G, Franke B,Wright MJ, Martin NG, Agartz I, Alda M, Alhusaini S, Almasy L, Almeida J, Alpert K, Andreasen NC, Andreassen OA, Apostolova LG, Appel K, Armstrong NJ, Aribisala B, Bastin ME, Bauer M, Bearden CE, Bergmann O, Binder EB, Blangero J, Bockholt HJ,Bøen E, Bois C, Boomsma DI, Booth T, Bowman IJ, Bralten J, Brouwer RM, Brunner HG, Brohawn DG, Buckner RL, Buitelaar J,Bulayeva K. et al. (2014). The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging and Behavior, Online First : 1-30. -- IF 2.667
Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Genes and evolution of two-domain toxins from lynx spider venom. FEBS Lett. 2014 Jan 23. pii: S0014-5793(14)00044-1. doi: 10.1016/j.febslet.2014.01.018. -- 3.582
Slavokhotova AA, Rogozhin EA, Musolyamov AK, Andreev YA, Oparin PB, Berkut AA, Vassilevski AA, Egorov TA, Grishin EV, Odintsova TI. Novel antifungal α-hairpinin peptide from Stellaria media seeds: structure, biosynthesis, gene structure and evolution. Plant Mol Biol. 2014 Jan; 84(1-2):189-202. doi: 10.1007/s11103-013-0127-z. -- IF 3.518
Evsyukov A., Ivanov D. Seection variability for Arg48His in Alcohol Dehydrogenase ADH1B among Asian populations. Human Biology. 2013. Vol. 85. Issue 4. P. 569-578. -- IF 1.522
Der Sarkissian C, Brotherton P, Balanovsky O, Templeton JE, Llamas B, Soubrier J, Moiseyev V, Khartanovich V, Cooper A, Haak W; Genographic Consortium. Mitochondrial genome sequencing in Mesolithic North East Europe Unearths a new sub-clade within the broadly distributed human haplogroup C1. // PLoS One. 2014 Feb 4;9(2):e87612. -- IF 3.730
Clarke AC, Prost S, Stanton JA, White WT, Kaplan ME, Matisoo-Smith EA; Genographic Consortium (Balanovsky OP). From cheek swabs to consensus sequences: an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes. // BMC Genomics. 2014 Jan 25;15:68 -- IF 4.40
2014 г.
Holmes MV, Dale CE, Zuccolo L, Silverwood RJ, Guo Y, Ye Z, Prieto-Merino D, Dehghan A, Trompet S, Wong A, Cavadino A, Drogan D, Padmanabhan S, Li S, Yesupriya A, Leusink M, Sundstrom J, Hubacek JA, Pikhart H, Swerdlow DI, Panayiotou AG, Borinskaya SA, Finan C, Shah S, Kuchenbaecker KB, Shah T, Engmann J, Folkersen L, Eriksson P, Ricceri F, Melander O, Sacerdote C, Gamble DM, Rayaprolu S, Ross OA, McLachlan S, Vikhireva O, Sluijs I, Scott RA, Adamkova V, Flicker L, Bockxmeer FM, Power C, Marques-Vidal P, Meade T, Marmot MG, Ferro JM, Paulos-Pinheiro S, Humphries SE, Talmud PJ, Mateo Leach I, Verweij N, Linneberg A, Skaaby T, Doevendans PA, Cramer MJ, Harst Pv, Klungel OH, Dowling NF, Dominiczak AF, Kumari M, Nicolaides AN, Weikert C, Boeing H, Ebrahim S, Gaunt TR, Price JF, Lannfelt L, Peasey A, Kubinova R, Pajak A, Malyutina S, Voevoda MI, Tamosiunas A, Maitland-van der Zee AH, Norman PE, Hankey GJ, Bergmann MM, Hofman A, Franco OH, Cooper J, Palmen J, Spiering W, Jong PA, Kuh D, Hardy R, Uitterlinden AG, Ikram MA, Ford I, Hyppönen E, Almeida OP, Wareham NJ, Khaw KT, Hamsten A, Husemoen LL, Tjønneland A, Tolstrup JS, Rimm E, Beulens JW, Verschuren WM, Onland-Moret NC, Hofker MH, Wannamethee SG, Whincup PH, Morris R, Vicente AM, Watkins H, Farrall M, Jukema JW, Meschia J, Cupples LA, Sharp SJ, Fornage M, Kooperberg C, LaCroix AZ, Dai JY, Lanktree MB, Siscovick DS, Jorgenson E, Spring B, Coresh J, Li YR, Buxbaum SG, Schreiner PJ, Ellison RC, Tsai MY, Patel SR, Redline S, Johnson AD, Hoogeveen RC, Hakonarson H, Rotter JI, Boerwinkle E, Bakker PI, Kivimaki M, Asselbergs FW, Sattar N, Lawlor DA, Whittaker J, Davey Smith G, Mukamal K, Psaty BM, Wilson JG, Lange LA, Hamidovic A, Hingorani AD, Nordestgaard BG, Bobak M, Leon DA, Langenberg C, Palmer TM, Reiner AP, Keating BJ, Dudbridge F, Casas JP; InterAct Consortium. // BMJ. 2014 Jul 10;349:g4164. doi: 10.1136/bmj.g4164. Free Full Text – IF 17.215
Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB. The ctenophore genome and the evolutionary origins of neural systems. Nature. 2014 Jun 5;510(7503):109-14. – IF 38.597
Salnikova L.E. Clinicopathologic Characteristics of Brain Tumors Are Associated with the Presence and Patterns of TP53 Mutations: Evidence from the IARC TP53 Database. // Neuromolecular Med. 2014 Jan 31. [Epub ahead of print] DOI: 10.1007/s12017-014-8290-1 – IF 4.492
Salnikova LE, Smelaya TV, Vesnina IN, Golubev AM, Moroz VV. Genetic Susceptibility to Nosocomial Pneumonia, Acute Respiratory Distress Syndrome and Poor Outcome in Patients at Risk of Critical Illness. // Inflammation 2014; 37(2):295-305. DOI: 10.1007/s10753-013-9740-x – IF 2.457
Khadzhieva MB, Lutcenko NN, Volodin IV, Morozova KV, Salnikova LE. Association of Oxidative Stress Related Genes with Idiopathic Recurrent Miscarriage. // Free Radical Research. 2014;48(5):534-541. DOI:10.3109/10715762.2014.891735 – IF 3.279
Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. // Gene. 2014 Apr 25;540(1):1-10. – IF 2.341
The FANTOM Consortium and the RIKEN PMI and CLST (DGT), в том числе сотрудники ИОГен Иван Кулаковский, Юлия Медведева, Александр Фаворов, Артем Касьянов, Илья Воронцов и Всеволод Макеев: A promoter-level mammalian expression atlas // Nature 507, 462–470 (27 March 2014) -- IF 38.597
Lomakin YA, Zakharova MY, Stepanov AV, Dronina MA, Smirnov IV, Bobik TV, Pyrkov AY, Tikunova NV, Sharanova SN, Boitsov VM, Vyazmin SY, Kabilov MR, Tupikin AE, Krasnov AN, Bykova NA, Medvedeva YA, Fridman MV, Favorov AV, Ponomarenko NA, Dubina MV, Boyko AN, Vlassov VV, Belogurov Jr AA, Gabibov AG. Heavy-light chain interrelations of MS-associated immunoglobulins probed by deep sequencing and rational variation.// Mol Immunol. 2014 Feb 14. pii: S0161-5890(14)00023-6. doi: 10.1016/j.molimm.2014.01.013 -- IF 2.645
Medvedeva YA, Khamis AM, Kulakovskiy IV, Ba-Alawi W, Bhuyan MS, Kawaji H, Lassmann T, Harbers M, Forrest AR, Bajic VB; FANTOM consortium. Effects of cytosine methylation on transcription factor binding sites. // BMC Genomics. 2014 Mar 26;15(1):119. doi: 10.1186/1471-2164-15-119. -- IF 4.40
Levitsky VG, Kulakovskiy IV, Ershov NI, Oschepkov DY, Makeev VJ, Hodgman TC, Merkulova TI. Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data. BMC Genomics. 2014 Jan 29;15(1):80. -- IF 4.40
Underhill PA, Poznik GD, Rootsi S, Järve M, Lin AA, Wang J, Passarelli B, Kanbar J, Myres NM, King RJ, Di Cristofaro J, Sahakyan H, Behar DM, Kushniarevich A, Sarac J, Saric T, Rudan P, Pathak AK, Chaubey G, Grugni V, Semino O, Yepiskoposyan L, Bahmanimehr A, Farjadian S, Balanovsky O, Khusnutdinova EK, Herrera RJ, Chiaroni J, Bustamante CD, Quake SR, Kivisild T, Villems R. The phylogenetic and geographic structure of Y-chromosome haplogroup R1a. // Eur J Hum Genet. 2014 Mar 26. doi: 10.1038/ejhg.2014.50 -- IF 4.319
Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. // Gene. 2014 ;540(1):1-10. doi: 10.1016/j.gene.2014.01.068 -- IF 2.341
Nezametdinova V.Z., Zakharevich N.V., Alekseeva M.G., Mavletova D.A., Averina O.A., Danilenko V.N. Identification and characterization of the eukaryote-like serine/threonine protein kinases in Bifidobacterium. Archives of Microbiology. 2014, V. 196, Issue 2, pp 125-136. -- IF 1.905
Thompson PM, Stein JL, Medland SE, Hibar DP, Vasquez AA, Renteria ME, Toro R, Jahanshad N, Schumann G, Franke B,Wright MJ, Martin NG, Agartz I, Alda M, Alhusaini S, Almasy L, Almeida J, Alpert K, Andreasen NC, Andreassen OA, Apostolova LG, Appel K, Armstrong NJ, Aribisala B, Bastin ME, Bauer M, Bearden CE, Bergmann O, Binder EB, Blangero J, Bockholt HJ,Bøen E, Bois C, Boomsma DI, Booth T, Bowman IJ, Bralten J, Brouwer RM, Brunner HG, Brohawn DG, Buckner RL, Buitelaar J,Bulayeva K. et al. (2014). The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging and Behavior, Online First : 1-30. -- IF 2.667
Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Genes and evolution of two-domain toxins from lynx spider venom. FEBS Lett. 2014 Jan 23. pii: S0014-5793(14)00044-1. doi: 10.1016/j.febslet.2014.01.018. -- 3.582
Slavokhotova AA, Rogozhin EA, Musolyamov AK, Andreev YA, Oparin PB, Berkut AA, Vassilevski AA, Egorov TA, Grishin EV, Odintsova TI. Novel antifungal α-hairpinin peptide from Stellaria media seeds: structure, biosynthesis, gene structure and evolution. Plant Mol Biol. 2014 Jan; 84(1-2):189-202. doi: 10.1007/s11103-013-0127-z. -- IF 3.518
Evsyukov A., Ivanov D. Seection variability for Arg48His in Alcohol Dehydrogenase ADH1B among Asian populations. Human Biology. 2013. Vol. 85. Issue 4. P. 569-578. -- IF 1.522
Der Sarkissian C, Brotherton P, Balanovsky O, Templeton JE, Llamas B, Soubrier J, Moiseyev V, Khartanovich V, Cooper A, Haak W; Genographic Consortium. Mitochondrial genome sequencing in Mesolithic North East Europe Unearths a new sub-clade within the broadly distributed human haplogroup C1. // PLoS One. 2014 Feb 4;9(2):e87612. -- IF 3.730
Clarke AC, Prost S, Stanton JA, White WT, Kaplan ME, Matisoo-Smith EA; Genographic Consortium (Balanovsky OP). From cheek swabs to consensus sequences: an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes. // BMC Genomics. 2014 Jan 25;15:68 -- IF 4.40
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Публикационная активность Института общей генетики в 1990 - 2012 гг по данным Web of Knowledge
Публикации 2006-2014
Публикационная активность ИОГен в 2006-2014 гг.