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Список публикаций Института в РИНЦ
Список публикаций Института за 2015-2022 гг. в Google Scholar
Избранные публикации 2013 - 2024 гг.
Vorontsov IE, Eliseeva IA, Zinkevich A, Nikonov M, Abramov S, Boytsov A, Kamenets V, Kasianova A, Kolmykov S, Yevshin IS, Favorov A, Medvedeva YA, Jolma A, Kolpakov F, Makeev VJ, Kulakovskiy IV. HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors // Nucleic Acids Res. 2024 Jan 5;52(D1):D154-D163. doi: 10.1093/nar/gkad1077.
Shumega A.R., Pavlov Y.I., Chirinskaite A.V., Rubel A.A., Inge-Vechtomov S.G., Stepchenkova E.I. CRISPR/Cas9 as a Mutagenic Factor. Int. J. Mol. Sci. 2024, 25, 823. https://doi.org/10.3390/ijms25020823 IF=6.2
2023
Kamarova K.A., Ershova N.M., Sheshukova E.V., Arifulin E.A., Ovsiannikova N.L., Antimonova A.A., Kudriashov A.A., Komarova T.V. Nicotiana benthamiana Class 1 Reversibly Glycosylated Polypeptides Suppress Tobacco Mosaic Virus Infection // International Journal of Molecular Sciences. – 2023. – Vol. 24. – № 16. – P. 12843. Q1
Komarova T., Ilina I., Taliansky M., Ershova N. Nanoplatforms for the Delivery of Nucleic Acids into Plant Cells // International Journal of Molecular Sciences. – 2023. – Vol. 24. – № 23. – P. 16665. Q1
Khadzhieva MB, Kolobkov DS, Kashatnikova DA, Gracheva AS, Redkin IV, Kuzovlev AN, Salnikova LE. // Biomolecules. 2023 Sep 12;13(9):1380. doi: 10.3390/biom13091380.
Mokrousov I., Vyazovaya A., Shitikov E., Badleeva M., Belopolskaya O., Bespiatykh D., Gerasimova A., Ioannidis P., Jiao W., Kyromova P., Masharsky A., Naizabayeva D., Papaventsis D., Pasechnik O.,Perdigao J., Rastogi N., Shen A., Sinkov V., Skiba Y., Solovieva N., Tafaj S.,Valcheva V., Kostyukova I., Zhdanova S., Zhuravlev V., Ogarkov O. Insight into pathogenomics and phylogeography of hypervirulent and highly-lethal Mycobacterium tuberculosis strain cluster. // BMC Infect Dis. 2023. Т. 23. С. 426. doi.org/10.1186/s12879-023-08413-7
Khadzhieva M.B., Gracheva A.S., Belopolskaya O.B., Kolobkov D.S., Kashatnikova D.A., Redkin I.V., Kuzovlev A.N., Grechko A.V., Salnikova L.E. COVID-19 severity: does the genetic landscape of rare variants matter? Frontiers in Genetics. 2023. Т. 14. С. 1152768. doi.org/10.3389/fgene.2023.1152768
Kurmyshkina O.V., Pavel V. Dobrynin, Pavel I. Kovchur, Tatyana O. Volkova. Brief Research Report: Sequencing-based transcriptome analysis reveals diversification of immune response-and angiogenesis-related expression patterns of early-stage cervical carcinoma as compared with high-grade CIN // Front. Immunol. Volume 14 – 2023. doi: 10.3389/fimmu.2023.1215607 IF=8,786. Q1
Evgenia Kupriyanova, Andrey Manakhov, Tatiana Ezhova. PARG1 and EXA1 genes as possible components of the facultative epigenetic control of plant development // Physiologia Plantarum. 2023. https://doi.org/10.1111/ppl.13959 IF=5,081. Q1
Natalia Ershova, Kamila Kamarova, Ekaterina Sheshukova, Alexandra Antimonova and Tatiana Komarova. A novel cellular factor of Nicotiana benthamiana susceptibility to tobamovirus infection // Front. Plant Sci., 18 July 2023. Volume 14 - 2023 | https://doi.org/10.3389/fpls.2023.1224958 IF=6.627. Q1
Natalya V Ponomareva, Tatiana Andreeva, Maria Protasova, Ekaterina P Kolesnikova, Daria Malina, Elena V. Kanavets, Rodion Konovalov, Marina V. Krotenkova, Vitaly Fokin, Sergey Illarioshkin, Evgeny I Rogaev. Genetic association of apolipoprotein E genotype with EEG alpha rhythm and resting-state functional MRI connectivity in non-demented adults during aging // Alzheimer's & Dementia. 2023. Volume19, IssueS3. https://doi.org/10.1002/alz.066061. IF=16.665. Q1
Evgenia Kupriyanova, Andrey Manakhov, Tatiana Ezhova. PARG1 and EXA1 genes as possible components of the facultative epigenetic control of plant development // Physiologia Plantarum. 2023. Volume175, Issue4. https://doi.org/10.1111/ppl.13959. IF=5.081. Q1
James T. Morton, Dong-Min Jin, Robert H. Mills, Yan Shao, Gibraan Rahman, Daniel McDonald, Qiyun Zhu, Metin Balaban, Yueyu Jiang, Kalen Cantrell, Antonio Gonzalez, Julie Carmel, Linoy Mia Frankiensztajn, Sandra Martin-Brevet, Kirsten Berding, Brittany D. Needham, María Fernanda Zurita, Maude David, Olga V. Averina, Alexey S. Kovtun, Antonio Noto, Michele Mussap, Mingbang Wang, Daniel N. Frank, Ellen Li, Wenhao Zhou, Vassilios Fanos, Valery N. Danilenko, Dennis P. Wall, Paúl Cárdenas, Manuel E. Baldeón, Sébastien Jacquemont, Omry Koren, Evan Elliott, Ramnik J. Xavier, Sarkis K. Mazmanian, Rob Knight, Jack A. Gilbert, Sharon M. Donovan, Trevor D. Lawley, Bob Carpenter, Richard Bonneau & Gaspar Taroncher-Oldenburg // Nature Neuroscience (2023) DOI: https://doi.org/10.1038/s41593-023-01361-0. IF=28,78. Q1
Grishina Y.V., Vat
lin A.A., Mavletova D.A., Odorskaya M.V., Senkovenko A.M., Ilyasov R.A., Danilenko V.N. Metabolites Potentially Determine the High Antioxidant Properties of Limosilactobacillus fermentum U-21. BioTech. 2023. Volume 12. Issue 2. 10.3390/biotech12020039
Abilev S.K., Igonina E.v., Sviridova D.A., Smirnova S.V. Bacterial Lux Biosensors in Genotoxicological Studies. Biosensors 2023, 13(5), 511; https://doi.org/10.3390/bios13050511
Alekseeva MG, Dyakov IN, Bushkova KK, Mavletova DA, Yunes RA, Chernyshova IN, Masalitin IA, Koshenko TA, Nezametdinova VZ, Danilenko VN. Study of the binding of ΔFN3.1 fragments of the Bifidobacterium longum GT15 with TNFα and prevalence of domain-containing proteins in groups of bacteria of the human gut microbiota. Microbiome Research Reports. 2023; 2(2):10. http://dx.doi.org/10.20517/mrr.2023.06
Ponomareva N.V., Andreeva T.V., Protasova M.S., Kunizheva S.S., Kuznetsova I.L., Kolesnikova E.P., Malina D.D., Mitrofanov A.A., Fokin V.F., Illarioshkin S.N., Rogaev E.I. Neuronal Hyperactivation in EEG Data during Cognitive Tasks Is Related to the Apolipoprotein J/Clusterin Genotype in Nondemented Adults. International Journal of Molecular Sciences. 2023, 24(7), 6790; https://doi.org/10.3390/ijms24076790 (IF = 6.208/ 6.628; Q1/Q1)
Šnjegota D., Niedziałkowska M., Vik Stronen A., Borowik T., Plis K., Arakelyan M., Ćirović D., Danila G., Djan M., Ghazaryan A., Gurielidze Z., Hayrapetyan T., Hegyeli Z., Karamanlidis A., Kopaliani N., Kusak J., Politov D., Talala M., Tsingarska E., Jędrzejewska B. The role of the Caucasus, Carpathian, and Dinaric–Balkan regions in preserving wolf genetic diversity. Mamm Biol (2023). https://doi.org/10.1007/s42991-023-00357-4
Tikhomirova, T. S., K. V. Krutovsky, K. A. Shestibratov 2023 Molecular traits for adaptation to drought and salt stress in birch, oak and poplar species. Forests 14(1), 7; https://doi.org/10.3390/f14010007 (IF = 3.282/3.292; Q1/Q1)
Novikova S. V., V. V. Sharov, N. V. Oreshkova, E. P. Simonov, K. V. Krutovsky, 2023. Genetic adaptation of Siberian larch (Larix sibirica Ledeb.) to high altitudes. International Journal of Molecular Sciences, 24(5), 4530; https://doi.org/10.3390/ijms24054530 (IF = 6.208/ 6.628; Q1/Q1)
Nieves-Orduña, H. E., K. V. Krutovsky, O. Gailing. 2022 Geographic distribution, conservation, and genomic resources of cacao Theobroma cacao L. Crop Science First published online: 22 March 2023 https://doi.org/10.1002/csc2.20959 (IF = 2.763/2.856; Q2WoS/Q1Scopus)
Solodneva E., Svishcheva G., Smolnikov R., Bazhenov S., Konorov E., Mukhina V., Stolpovsky Y. Genetic Structure Analysis of 155 Transboundary and Local Populations of Cattle (Bos taurus, Bos indicus and Bos grunniens) Based on STR Markers. International Journal of Molecular Sciences. 2023; 24(5):5061. https://doi.org/10.3390/ijms24055061 (Q1, IF = 6.2)
Subkhankulova T., Camargo Sosa K., Uroshlev L.A., Nikaido M., Shriever N., Kasianov A.S., Yang X., Rodrigues F.S.L.M., Carney T.J., Bavister G., Schwetlick H., Dawes J.H.P., Rocco A., Makeev V.J., Kelsh R.N. Zebrafish pigment cells develop directly from persistent highly multipotent progenitors. Nature Communications. 2023. 14: 1258, DOI: 10.1038/s41467-023-36876-4 (Q1, IF = 17.7)
Levchenko A., Gusev F., Rogaev E. The evolutionary origin of psychosis. Front Psychiatry. 2023 Jan 20;14:1115929. doi: 10.3389/fpsyt.2023.1115929.
Protasova M.S., Andreeva T.V., Klyushnikov S.A., Illarioshkin S.N., Rogaev E.I. Genetic Variant in GRM1 Underlies Congenital Cerebellar Ataxia with No Obvious Intellectual Disability. Int J Mol Sci. 2023 Jan 12;24(2):1551. doi: 10.3390/ijms24021551
Senik S.V., Manzhieva B.S., Maloshenok L.G., Serebryakov E.B., Bruskin S.A., Kotlova E.R. Heterogeneous Distribution of Phospholipid Molecular Species in the Surface Culture of Flammulina velutipes: New Facts about Lipids Containing α-Linolenic Fatty Acid. J Fungi (Basel). 2023 Jan 12;9(1):102. doi: 10.3390/jof9010102.
Kolomiets O., Bakloushinskaya I., Pankin V., Tambovtseva V., Matveevsky S. Irregularities in Meiotic Prophase I as Prerequisites for Reproductive Isolation in Experimental Hybrids Carrying Robertsonian Translocations Diversity 2023, 15(3), 364; https://doi.org/10.3390/d15030364
Deviatiiarov, R.M., Gams, A., Kulakovskiy, I.V. et al. An atlas of transcribed human cardiac promoters and enhancers reveals an important role of regulatory elements in heart failure. Nat Cardiovasc Res 2, 58–75 (2023). https://doi.org/10.1038/s44161-022-00182-x
Khadzhieva MB, Gracheva AS, Belopolskaya OB, Chursinova YV, Redkin IV, Pisarev MV, Kuzovlev AN. Serial Changes in Blood-Cell-Count-Derived and CRP-Derived Inflammatory Indices of COVID-19 Patients. Diagnostics (Basel). 2023 Feb 16;13(4):746. doi: 10.3390/diagnostics13040746
Maloshenok L, Abushinova G, Kazachkina N, Bogdanov A Jr, Zherdeva V. Tet-Regulated Expression and Optical Clearing for In Vivo Visualization of Genetically Encoded Chimeric dCas9/Fluorescent Protein Probes. Materials (Basel). 2023 Jan 19;16(3):940. doi: 10.3390/ma16030940.
Matveevsky S, Tropin N, Kucheryavyy A, Kolomiets O. The First Analysis of Synaptonemal Complexes in Jawless Vertebrates: Chromosome Synapsis and Transcription Reactivation at Meiotic Prophase I in the Lamprey Lampetra fluviatilis (Petromyzontiformes, Cyclostomata). Life (Basel). 2023 Feb 11;13(2):501. doi: 10.3390/life13020501.
Belashova TA, Valina AA, Sysoev EI, Velizhanina ME, Zelinsky AA, Galkin AP. Search and Identification of Amyloid Proteins. Methods Protoc. 2023 Feb 4;6(1):16. doi: 10.3390/mps6010016.
Lemesheva V, Islamova R, Stepchenkova E, Shenfeld A, Birkemeyer C, Tarakhovskaya E. Antibacterial, Antifungal and Algicidal Activity of Phlorotannins, as Principal Biologically Active Components of Ten Species of Brown Algae. Plants (Basel). 2023 Feb 12;12(4):821. doi: 10.3390/plants12040821.
Lauffer P, Zwaveling-Soonawala N, Li S, Bacalini MG, Naumova OY, Wiemels J, Boelen A, Henneman P, de Smith AJ, van Trotsenburg ASP. Meta-Analysis of DNA Methylation Datasets Shows Aberrant DNA Methylation of Thyroid Development or Function Genes in Down Syndrome. Thyroid. 2023 Jan;33(1):53-62. doi: 10.1089/thy.2022.0320.
Veselkina ER, Trostnikov MV, Roshina NV, Pasyukova EG.The Effect of the Tau Protein on D. melanogaster Lifespan Depends on GSK3 Expression and Sex. Int J Mol Sci. 2023 Jan 21;24(3):2166. doi: 10.3390/ijms24032166.
Marakulina D, Vorontsov IE, Kulakovskiy IV, Lennartsson A, Drabløs F, Medvedeva YA. EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes. Nucleic Acids Res. 2023 Jan 6;51(D1):D564-D570. doi: 10.1093/nar/gkac989.
2022
Spangenberg, V., Redekop, I., Simanovsky, S. A., Kolomiets, O. (2022). Cytogenetic Analysis of the Bimodal Karyotype of the Common European Adder, Vipera berus (Viperidae). Animals, 12(24), 3563. (Q1, IF=3.2)
https://www.mdpi.com/2076-2615/12/24/3563
Rovatsos, M., Galoyan, E., Spangenberg, V., Vassilieva, A., Kratochvíl, L. (2022). XX/XY sex chromosomes in a blind lizard (Dibamidae): Towards understanding the evolution of sex determination in squamates. Journal of Evolutionary Biology, 35(12), 1791-1796. (Q1, IF=2.5)
https://onlinelibrary.wiley.com/doi/abs/10.1111/jeb.14123
Spangenberg, V. (2022). FISH—and the Characterization of Synaptonemal Complex. In Cytogenetics and Molecular Cytogenetics (pp. 297-305). CRC Press.
Kozlov A. P. The Theory of Carcino-Evo-Devo and Its Non-Trivial Predictions // Genes. 2022. 13. 2347. https://doi.org/10.3390/genes13122347
Kuchma O., J. Rebola-Lichtenberg, D. Janz, K. V. Krutovsky, C. Ammer, A. Polle, O. Gailing 2022 Response of poplar leaf transcriptome to changed management and environmental conditions in pure and mixed with black locust stands. Forests 13(2), 147; https://doi.org/10.3390/f13020147 Published: 19 January 2022 (IF = 2.634/2.804; Q1)
Shevchenko G. V., K. V. Krutovsky 2022 Mechanical stress effects on transcriptional regulation of genes encoding microtubule- and actin-associated proteins. Physiology and Molecular Biology of Plants https://doi.org/10.1007/s12298-021-01123-x Published: 21 January 2022 (IF = 2.391/2.836; Q1/2)
Biriukov V.V., Pavlov I.N., Litovka Yu.A., Oreshkova N.V., Sharov V.V., Simonov E.P., Kuzmin D.A., Krutovsky K.V. 2022 De novo transcriptome assembly and annotation of a new plant pathogenic Corinectria sp. strain in Siberia. Mikologiya i Fitopatologiya (Micology and Phytopathology) 56(2): 114–126 https://doi.org/10.31857/S0026364822020052 (IF = 0.530; Q4)
Bondar, E. I., M. Troukhan, K. V. Krutovsky, T. V. Tatarinova. 2022. Genome-wide prediction of transcription start sites in conifers. International Journal of Molecular Sciences 23(3), 1735; https://doi.org/10.3390/ijms23031735 (IF = 6.208/ 6.628; Q1/Q1)
Kirichenko, A. D., A. A. Poroshina, D. Yu. Sherbakov, M. G. Sadovsky, K. V. Krutovsky 2022. Comparative analysis of alignment-free genome clustering and whole genome alignment-based phylogenomic relationship of coronaviruses. PLoS One 17(3): e0264640. https://doi.org/10.1371/journal.pone.0264640 (IF =3.240/3.788; S1/Q2)
Popov, V. N., M. Yu. Syromyatnikov, C. Franceschi, A. A. Moskalev, K. V. Krutovsky 2022. Genetic mechanisms of aging in plants: What can we learn from them? Ageing Research Reviews 77: 101601 https://doi.org/10.1016/j.arr.2022.101601 Published online first: 9 March 2022 (IF = 10.616, Q1)
Batalova, A. Y., Y. A. Putintseva, M. G. Sadovsky, K. V. Krutovsky 2022 Comparative genomics of seasonal senescence in forest trees. International Journal of Molecular Sciences 23(7), 3761. https://doi.org/10.3390/ijms23073761 (IF = 6.208/6.628; Q1/Q1)
Perfileva A. I., I. A. Graskova, B. G. Sukhov, K. V. Krutovsky 2022 Effect of selenium nanocomposites based on natural polymer matrices on the biomass and storage of potato tubers in a field experiment. Agronomy 12(6), 1281; https://doi.org/10.3390/agronomy12061281 (IF =3.417/3.640; Q1/Q1)
Schulte L., S. Meucci, K. Stoof-Leichsenring, T. Heitkam, N. Schmidt, B. von Hippel, A. A. Andreev, B. Diekmann, B. K. Biskaborn, B. Wagner, M. Melles, L. A. Pestryakova, I. G. Alsos, C. Clarke, K. V. Krutovsky, U. Herzschuh. 2022. Larix species range dynamics in Siberia since the Last Glacial captured from sedimentary ancient DNA. Communications Biology 5, 570. https://doi.org/10.1038/s42003-022-03455-0 (IF = 6.268/6.268; Q1/Q1)
Belokopytova L. V., Zhirnova D. F., Krutovsky K. V., N. B. Mapitov, E. A. Vaganov, E. A. Babushkina 2022 Species- and age-specific growth reactions to extreme droughts of the keystone tree species across forest-steppe and sub-taiga habitats of South Siberia. Forests 13(7), 1027. Published: 29 June 2022; https://doi.org/10.3390/f13071027 (IF = 3.282/3.292; Q1/Q1)
Bondar, E. I., S.I. Feranchuk, K. A. Miroshnikova, V. V. Sharov, D. A. Kuzmin, N. V. Oreshkova, K. V. Krutovsky 2022 Annotation of Siberian larch (Larix sibirica Ledeb.) nuclear genome – one of the most cold resistant tree species in the only seasonal senescence Genus in Pinaceae. Plants 11(15): 2062. https://doi.org/10.3390/plants11152062 (IF = 4.658/4.827; Q1/Q1)
Krutovsky K. V. 2022 Dendrogenomics is a new interdisciplinary field of research of the adaptive genetic potential of forest tree populations integrating dendrochronology, dendroecology, dendroclimatology and genomics. Russian Journal of Genetics 58(11): 1273–1286. https://doi.org/10.1134/S1022795422110059 (IF = 0.691/0.720; Q4/Q4) (Крутовский К. В. Дендрогеномика – новая междисциплинарная область исследований адаптивного генетического потенциала лесных древесных популяций, интегрирующая дендрохронологию, дендроэкологию, дендроклиматологию и геномику. Генетика 58(11): 1225–1286. https://doi.org/10.31857/S0016675822110054)
Kersten B., Rellstab C., Schroeder H., Brodbeck S., Fladung M., Krutovsky K.V., Gugerli F. 2022 The mitochondrial genome sequence of Abies alba Mill. reveals a high structural and combinatorial diversity. BMC Genomics 23: 776. Published: 28 November 2022 https://doi.org/10.1186/s12864-022-08993-9 (IF = 4.558 / 4.930; Q2/Q1)
Zhirnova D.F., Belokopytova L.V., Krutovsky K.V., Kholdaenko Y.A., Babushkina E.A., Vaganov E.A. 2022 Spatial-coherent dynamics and climatic signal in radial growth of Siberian stone pine (Pinus sibirica Du Tour) in subalpine stands along the Western Sayan Mountains. Forests 13(12), 1994. https://doi.org/10.3390/f13121994. Published: 25 November 2022 (IF = 2.634/2.804; Q1)
Sergey Matveevsky, Irina Bakloushinskaya, Valentina Tambovtseva, Maret Atsaeva, Tatiana Grishaeva, Aleksey Bogdanov and Oxana Kolomiets. Nonhomologous Chromosome Interactions in Prophase I: Dynamics of Bizarre Meiotic Contacts in the Alay Mole Vole Ellobius alaicus (Mammalia, Rodentia) // Genes 2022, 13(12), 2196; https://doi.org/10.3390/genes13122196
Olga A. Krasnova, Vitaly V. Gursky, Alina S. Chabina, Karina A. Kulakova, Larisa L. Alekseenko, Alexandra V. Panova, Sergey L. Kiselev and Irina E. Neganova. Prognostic Analysis of Human Pluripotent Stem Cells Based on Their Morphological Portrait and Expression of Pluripotent Markers // Int. J. Mol. Sci. 2022, 23(21), 12902; https://doi.org/10.3390/ijms232112902
Genes and Diseases: Insights from Transcriptomics Studies
Kolobkov DS, Sviridova DA, Abilev SK, Kuzovlev AN, Salnikova LE. Genes and Diseases: Insights from Transcriptomics Studies. Genes (Basel). 2022 Jun 28;13(7):1168. doi: 10.3390/genes13071168
Kashatnikova DA, Khadzhieva MB, Kolobkov DS, Belopolskaya OB, Smelaya TV, Gracheva AS, Kalinina EV, Larin SS, Kuzovlev AN, Salnikova LE. Pneumonia and Related Conditions in Critically Ill Patients—Insights from Basic and Experimental Studies. International Journal of Molecular Sciences. 2022; 23(17):9896. https://doi.org/10.3390/ijms23179896
Alina G. Mikhailova, Alina A. Mikhailova, Kristina Ushakova, Evgeny O. Tretiakov, Dmitrii Iliushchenko, Victor Shamansky, Valeria Lobanova, Ivan Kozenkov, Bogdan Efimenko, Andrey A. Yurchenko, Elena Kozenkova, Evgeny M. Zdobnov, Vsevolod Makeev, Valerian Yurov, Masashi Tanaka, Irina Gostimskaya, Zoe Fleischmann, Sofia Annis, Melissa Franco, Kevin Wasko, Stepan Denisov, Wolfram S. Kunz, Dmitry Knorre, Ilya Mazunin, Sergey Nikolaev, Jacques Fellay, Alexandre Reymond, Konstantin Khrapko, Konstantin Gunbin, and Konstantin Popadin. Nucleic Acids Research, 2022, Vol. 50, No. 18 Published online 21 September 2022 https://doi.org/10.1093/nar/gkac779
Ponomareva NV, Andreeva TV, Protasova M, Konovalov RN, Krotenkova MV, Kolesnikova EP, Malina DD, Kanavets EV, Mitrofanov AA, Fokin VF, Illarioshkin SN, Rogaev EI. Front Neurosci. 2022 Aug 1;16:931173. doi: 10.3389/fnins.2022.931173. eCollection 2022.
Shadow coat colour in American mink associated with a missense mutation in the KIT gene.
Manakhov AD, Mintseva MY, Andreeva TV, Trapezov OV, Rogaev EI. Anim Genet. 2022 Aug;53(4):522-525. doi: 10.1111/age.13202.
Andreeva TV, Manakhov AD, Gusev FE, Patrikeev AD, Golovanova LV, Doronichev VB, Shirobokov IG, Rogaev EI. Sci Rep. 2022 Jul 29;12(1):13016. doi: 10.1038/s41598-022-16164-9.
Manakhov AD, Mintseva MY, Uralsky LI, Andreeva TV, Trapezov OV, Rogaev EI. Sci Rep. 2022 Jun 21;12(1):10483. doi: 10.1038/s41598-022-14079-z.
Novel genes bearing mutations in rare cases of early-onset ataxia with cerebellar hypoplasia.
Protasova MS, Gusev FE, Andreeva TV, Klyushnikov SA, Illarioshkin SN, Rogaev EI. Eur J Hum Genet. 2022 Jun;30(6):703-711. doi: 10.1038/s41431-022-01088-9.
The complete sequence of a human genome.
Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, Aganezov S, Hoyt SJ, Diekhans M, Logsdon GA, Alonge M, Antonarakis SE, Borchers M, Bouffard GG, Brooks SY, Caldas GV, Chen NC, Cheng H, Chin CS, Chow W, de Lima LG, Dishuck PC, Durbin R, Dvorkina T, Fiddes IT, Formenti G, Fulton RS, Fungtammasan A, Garrison E, Grady PGS, Graves-Lindsay TA, Hall IM, Hansen NF, Hartley GA, Haukness M, Howe K, Hunkapiller MW, Jain C, Jain M, Jarvis ED, Kerpedjiev P, Kirsche M, Kolmogorov M, Korlach J, Kremitzki M, Li H, Maduro VV, Marschall T, McCartney AM, McDaniel J, Miller DE, Mullikin JC, Myers EW, Olson ND, Paten B, Peluso P, Pevzner PA, Porubsky D, Potapova T, Rogaev EI, Rosenfeld JA, Salzberg SL, Schneider VA, Sedlazeck FJ, Shafin K, Shew CJ, Shumate A, Sims Y, Smit AFA, Soto DC, Sović I, Storer JM, Streets A, Sullivan BA, Thibaud-Nissen F, Torrance J, Wagner J, Walenz BP, Wenger A, Wood JMD, Xiao C, Yan SM, Young AC, Zarate S, Surti U, McCoy RC, Dennis MY, Alexandrov IA, Gerton JL, O'Neill RJ, Timp W, Zook JM, Schatz MC, Eichler EE, Miga KH, Phillippy AM. Science. 2022 Apr;376(6588):44-53. doi: 10.1126/science.abj6987.
Complete genomic and epigenetic maps of human centromeres.
Altemose N, Logsdon GA, Bzikadze AV, Sidhwani P, Langley SA, Caldas GV, Hoyt SJ, Uralsky L, Ryabov FD, Shew CJ, Sauria MEG, Borchers M, Gershman A, Mikheenko A, Shepelev VA, Dvorkina T, Kunyavskaya O, Vollger MR, Rhie A, McCartney AM, Asri M, Lorig-Roach R, Shafin K, Lucas JK, Aganezov S, Olson D, de Lima LG, Potapova T, Hartley GA, Haukness M, Kerpedjiev P, Gusev F, Tigyi K, Brooks S, Young A, Nurk S, Koren S, Salama SR, Paten B, Rogaev EI, Streets A, Karpen GH, Dernburg AF, Sullivan BA, Straight AF, Wheeler TJ, Gerton JL, Eichler EE, Phillippy AM, Timp W, Dennis MY, O'Neill RJ, Zook JM, Schatz MC, Pevzner PA, Diekhans M, Langley CH, Alexandrov IA, Miga KH. Science. 2022 Apr;376(6588):eabl4178. doi: 10.1126/science.abl4178.
Genomics of Ancient Pathogens: First Advances and Prospects.
Malyarchuk AB, Andreeva TV, Kuznetsova IL, Kunizheva SS, Protasova MS, Uralsky LI, Tyazhelova TV, Gusev FE, Manakhov AD, Rogaev EI. Biochemistry (Mosc). 2022 Mar;87(3):242-258. doi: 10.1134/S0006297922030051
Erofeeva TV, Grigorenko AP, Gusev FE, Kosevich IA, Rogaev EI. Biochemistry (Mosc). 2022 Mar;87(3):269-293. doi: 10.1134/S0006297922030075.
Grigorenko AP, Protasova MS, Lisenkova AA, Reshetov DA, Andreeva TV, Garcias GL, Martino Roth MDG, Papassotiropoulos A, Rogaev EI. Cells. 2022 Jan 25;11(3):400. doi: 10.3390/cells11030400.
Kuznetsova IL, Ponomareva NV, Alemastseva EA, Manakhov AD, Andreeva TV, Gusev FE, Rogaev EI. Genes (Basel). 2022 Jan 18;13(2):164. doi: 10.3390/genes13020164.
Panova AV, Klementieva NV, Sycheva AV, Korobko EV, Sosnovtseva AO, Krasnova TS, Karpova MR, Rubtsov PM, Tikhonovich YV, Tiulpakov AN, Kiselev SL. Int J Mol Sci. 2022 Aug 8;23(15):8824. doi: 10.3390/ijms23158824.
Equilibrium among Inflammatory Factors Determines Human MSC-Mediated Immunosuppressive Effect.
Suzdaltseva Y, Goryunov K, Silina E, Manturova N, Stupin V, Kiselev SL. Cells. 2022 Apr 3;11(7):1210. doi: 10.3390/cells11071210
Mikhailova AG, Mikhailova AA, Ushakova K, Tretiakov EO, Iliushchenko D, Shamansky V, Lobanova V, Kozenkov I, Efimenko B, Yurchenko AA, Kozenkova E, Zdobnov EM, Makeev V, Yurov V, Tanaka M, Gostimskaya I, Fleischmann Z, Annis S, Franco M, Wasko K, Denisov S, Kunz WS, Knorre D, Mazunin I, Nikolaev S, Fellay J, Reymond A, Khrapko K, Gunbin K, Popadin K. Nucleic Acids Res. 2022 Sep 21:gkac779. doi: 10.1093/nar/gkac779. Online ahead of print.
Boytsov A, Abramov S, Aiusheeva AZ, Kasianova AM, Baulin E, Kuznetsov IA, Aulchenko YS, Kolmykov S, Yevshin I, Kolpakov F, Vorontsov IE, Makeev VJ, Kulakovskiy IV. Nucleic Acids Res. 2022 Apr 21;50(W1):W51-6. doi: 10.1093/nar/gkac262.
Positional weight matrices have sufficient prediction power for analysis of noncoding variants.
Boytsov A, Abramov S, Makeev VJ, Kulakovskiy IV. F1000Res. 2022 Jan 12;11:33. doi: 10.12688/f1000research.75471.3. eCollection 2022.
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Analysis of the Frequency of 10 Polymorphic Markers of CDKN2A and RB1 Genes in Russian Populations.
Olkova MV, Balanovsky OP. Bull Exp Biol Med. 2022 Jan;172(3):352-358. doi: 10.1007/s10517-022-05391-9.
Tambovtseva V, Bakloushinskaya I, Matveevsky S, Bogdanov A. Life (Basel). 2022 May 13;12(5):728. doi: 10.3390/life12050728.
Kovtun AS, Averina OV, Angelova IY, Yunes RA, Zorkina YA, Morozova AY, Pavlichenko AV, Syunyakov TS, Karpenko OA, Kostyuk GP, Danilenko VN. Biomedicines. 2022 Sep 2;10(9):2162. doi: 10.3390/biomedicines10092162.
The Gene Expression Profile Differs in Growth Phases of the Bifidobacterium Longum Culture.
Veselovsky VA, Dyachkova MS, Bespiatykh DA, Yunes RA, Shitikov EA, Polyaeva PS, Danilenko VN, Olekhnovich EI, Klimina KM. Microorganisms. 2022 Aug 21;10(8):1683. doi: 10.3390/microorganisms10081683.
CRISPR-Cas Systems in Gut Microbiome of Children with Autism Spectrum Disorders.
Zakharevich NV, Nikitin MS, Kovtun AS, Malov VO, Averina OV, Danilenko VN, Artamonova II. Life (Basel). 2022 Mar 3;12(3):367. doi: 10.3390/life12030367.
Lutsenko IA, Baravikov DE, Koshenskova KA, Kiskin MA, Nelyubina YV, Primakov PV, Voronina YK, Garaeva VV, Aleshin DA, Aliev TM, Danilenko VN, Bekker OB, Eremenko IL. RSC Adv. 2022 Feb 10;12(9):5173-5183.
Shahbaaz M, Maslov DA, Vatlin AA, Danilenko VN, Grishina M, Christoffels A. Biomedicines. 2022 Jan 31;10(2):333. doi: 10.3390/biomedicines10020333.
Buravchenko GI, Maslov DA, Alam MS, Grammatikova NE, Frolova SG, Vatlin AA, Tian X, Ivanov IV, Bekker OB, Kryakvin MA, Dontsova OA, Danilenko VN, Zhang T, Shchekotikhin AE. Pharmaceuticals (Basel). 2022 Jan 27;15(2):155. doi: 10.3390/ph15020155.
Lactobacilli: Legal Regulation and Prospects for New Generation Drugs.
Yunes RA, Poluektova EU, Belkina TV, Danilenko VN. Appl Biochem Microbiol. 2022; 58(5): 652-664. doi: 10.1134/S0003683822050179.
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Zorkina YA, Syunyakov TS, Abramova OV, Yunes RA, Averina OV, Kovtun AS, Angelova IY, Khobta EB, Susloparova DA, Pavlichenko AV, Karpenko OA, Andreyuk DS, Tovmasyan AS, Danilenko VN, Gurina OI, Kostyuk GP, Morozova AY. Zh Nevrol Psikhiatr Im S S Korsakova. 2022;122(1. Vyp. 2):59-64. doi: 10.17116/jnevro202212201259. PMID: 35238513 Russian.
2021
Salnikova LE, Kolobkov DS, Sviridova DA, Abilev SK. An overview of germline variations in genes of primary immunodeficiences through integrative analysis of ClinVar, HGMD® and dbSNP databases. Hum Genet 2021. V. 140. No. 9. P. 1379–1393. https://doi.org/10.1007/s00439-021-02316-w.
Khadzhieva MB, Kalinina EV, Larin SS, Sviridova DA, Gracheva AS, Chursinova JV, Stepanov VA, Redkin IV, Avdeikina LS, Rumyantsev AG, Kuzovlev AN, Salnikova LE. TREC/KREC Levels in Young COVID-19 Patients. Diagnostics. 2021; 11(8):1486. https://doi.org/10.3390/diagnostics11081486
Shestibratov K. A., O. Yu. Baranov, E. N. Mescherova, P. S. Kiryanov, S. V. Panteleev, L. V. Mozharovskaya, K. V. Krutovsky, V. E. Padutov 2021 Structure and phylogeny of the curly birch chloroplast genome. Frontiers in Genetics 12: 625764. https://doi.org/10.3389/fgene.2021.625764 Published: 4 October 2021 (IF = 4.772/4.933; Q2/1)
Perfileva A. I., O. M. Tsivileva, O. A. Nozhkina, M. S. Karepova, I. A. Graskova, T. V. Ganenko, B. G. Sukhov, K. V. Krutovsky 2021. Effect of natural polysaccharide matrix-based selenium nanocomposites on Phytophthora cactorum and rhizospheric microorganisms. Nanomaterials 11(9): 2274; https://doi.org/10.3390/nano11092274 Published: 1 September 2021 (IF = 5.719/5.810; Q1/2)
Khutsishvili S. S., A. I. Perfileva, O. A. Nozhkina, T. V. Ganenko, K. V. Krutovsky 2021 Novel Nanobiocomposites Based on Natural Polysaccharides as Universal Trophic Low-Dose Micronutrients. International Journal of Molecular Sciences 22(1): 12006; https://doi.org/10.3390/ijms222112006 Published: 5 November 2021 (IF = 6.208/6.628; Q1/Q1)
Titievsky, A.; Putintseva, Y.A.; Taranenko, E.A.; Baskin, S.; Oreshkova, N.V.; Brodsky, E.; Sharova, A. V.; Sharov, V.V.; Panov, J.; Kuzmin, D.A.; Brodsky, L.; Krutovsky, K.V. 2021 Comparative genomics analysis of repetitive elements in ten gymnosperm species: “dark repeatome” and its abundance in conifer and Gnetum species. Life 11(11): 1234; https://doi.org/10.3390/life11111234 Published: 15 November 2021 (IF = 3.251/na; Q1/2)
Dasgupta M. G., A. B. M. Parveen, S. Shanmugavel, V. Dharanishanthi, M. Muthupandi, N. Kumar, S. S. Chauhan, J. Kalaivanan, H. Mohan, K. V. Krutovsky, D. Rajasugunasekar. 2021 Targeted re-sequencing and genome-wide association analysis for wood property traits in breeding population of Eucalyptus tereticornis × E. grandis. Genomics 113(6): 4276-4292 https://doi.org/10.1016/j.ygeno.2021.11.013 Published: 14 November 2021 (IF = 4.310/4.380; Q2/2)
Belokopytova L. V., Zhirnova D. F., Meko D. M., Babushkina E. A., Vaganov E. A., Krutovsky K. V. 2021 Tree rings reveal the impact of soil temperature on larch growth in the forest-steppe of Siberia. Forests 12(12): 1765. Published: 14 December 2021 https://doi.org/10.3390/f12121765 (IF = 3.282/3.292; Q1/Q1)
A Novel Isogenic Human Cell-Based System for MEN1 Syndrome Generated by CRISPR/Cas9 Genome Editing.
Klementieva N, Goliusova D, Krupinova J, Yanvarev V, Panova A, Mokrysheva N, Kiselev SL. Int J Mol Sci. 2021 Nov 8;22(21):12054. doi: 10.3390/ijms222112054.
Philonenko ES, Tan Y, Wang C, Zhang B, Shah Z, Zhang J, Ullah H, Kiselev SL, Lagarkova MA, Li D, Dai Y, Samokhvalov IM. J Cell Mol Med. 2021 Sep;25(18):8701-8714. doi: 10.1111/jcmm.16826.
Panova AV, Kulikova KS, Klementieva NV, Krylov ID, Snezhko IO, Tiulpakov AN, Kiselev SL. Stem Cell Res. 2021 Jul;54:102414. doi: 10.1016/j.scr.2021.102414. Epub 2021 Jun 4.
Andreeva T, Manakhov A, Kunizheva S, Rogaev E. Biochemistry (Mosc). 2021 Dec;86(12):1572-1578. doi: 10.1134/S0006297921120063.
The gene regulation knowledge commons: the action area of GREEKC.
Kuiper M, Bonello J, Fernández-Breis JT, Bucher P, Futschik ME, Gaudet P, Kulakovskiy IV, Licata L, Logie C, Lovering RC, Makeev VJ, Orchard S, Panni S, Perfetto L, Sant D, Schulz S, Vercruysse S, Zerbino DR, Lægreid A; GRECO Consortium. Biochim Biophys Acta Gene Regul Mech. 2022 Jan;1865(1):194768. doi: 10.1016/j.bbagrm.2021.194768.
Cyclical fate restriction: a new view of neural crest cell fate specification.
Kelsh RN, Camargo Sosa K, Farjami S, Makeev V, Dawes JHP, Rocco A. Development. 2021; 148(22):dev176057. doi: 10.1242/dev.176057
DNA Environment of Centromeres and Non-Homologous Chromosomes Interactions in Mouse.
Spangenberg V, Losev M, Volkhin I, Smirnova S, Nikitin P, Kolomiets O. Cells. 2021 Dec 1;10(12):3375. doi: 10.3390/cells10123375.
Evaluation of the carbonylation of filamentous fungi proteins by dry immune dot blotting.
Mazheika IS, Semenova MA, Voronko OV, Psurtseva NV, Kolomiets OL, Kamzolkina OV. Fungal Biol. 2021 Nov;125(11):923-933. doi: 10.1016/j.funbio.2021.06.006.
Olekhnovich EI, Batotsyrenova EG, Yunes RA, Kashuro VA, Poluektova EU, Veselovsky VA, Ilina EN, Danilenko VN, Klimina KM. Microb Cell Fact. 2021 Dec 20;20(1):226. doi: 10.1186/s12934-021-01716-x.
Matveevsky S, Grishaeva T. Heterogeneity in conservation of multifunctional partner enzymes with meiotic importance, CDK2 kinase and BRCA1 ubiquitin ligase // Peer J. 2021. 9:e12231 doi: 10.7717/peerj.12231. PMID: 3469225
Mazheika I.S., Semenova M.A., Voronko O.V., Psurtseva N.V., Kolomiets O.L, Kamzolkina O.V.Evaluation of the carbonylation of filamentous fungi proteins by dry immune dot blotting // Fungal Biol. Fungal Biol 2021 Nov;125(11):923-933. doi: 10.1016/j.funbio.2021.06.006. PMID: 34649679
Spangenberg V., Arakelyan M., Cioffi M., Liehr T., Al-Rikabi A., Martynova E., Stepanyan I., Danielyan F., Galoyan E., Kolomiets O. Cytogenetic mechanisms of unisexuality in rock lizards // Sci Rep. 2020 May 26;10(1):8697.doi: 10.1038/s41598-020-65686-7. PMID: 32457493
Nezametdinova V.Z., Yunes R.A., Dukhinova M.S., Alekseeva M.G., Danilenko V.N. The Role of the PFNA Operon of Bifidobacteria in the Recognition of Host’s Immune Signals: Prospects for the Use of the FN3 Protein in the Treatment of COVID-19 // Int. J. Mol. Sci. 2021, 22(17), 9219; https://doi.org/10.3390/ijms22179219
Habib N. A., M. Müller, O. Gailing, A. Patzelt, G. Al Issai, K. V. Krutovsky, M. Wiehle 2021 Genetic diversity and differentiation of Olea europaea subsp. cuspidata (Wall. & G. Don) Cif.in the Hajar Mountains of Oman. Genetic Resources and Crop Evolution 68(3): 865–883 https://doi.org/10.1007/s10722-020-01030-2 (IF = 1.071; Q3)
Cuervo-Alarcon L., M. Arend, M. Müller, C. Sperisen, R. Finkeldey, K. V. Krutovsky 2021 A candidate gene association analysis identifies SNPs potentially involved in drought tolerance in European beech (Fagus sylvatica L.). Scientific Report 11: 2386. https://doi.org/10.1038/s41598-021-81594-w (IF = 4.122; Q1)
Tarieiev A. S., O. Gailing, K. V. Krutovsky 2021 ITS secondary structure reconstruction to resolve taxonomy and phylogeny of the Betula L. genus. PeerJ 9:e10889 https://doi.org/10.7717/peerj.10889 (IF = 2.380; Q1)
Perfileva A. I., O. A. Nozhkina, T. V. Ganenko, I. A. Graskova, B. G. Sukhov, A. V. Artem’ev, B. A. Trofimov, K. V. Krutovsky 2021 Selenium nanocomposites in natural matrices as potato recovery agent. International Journal of Molecular Sciences 22(9), 4576; https://doi.org/10.3390/ijms22094576 (IF = 4.556; Q1)
Nieves-Orduña, H. E., M. Müller, K. V. Krutovsky, O. Gailing. 2021 Geographic patterns of genetic variation among cacao (Theobroma cacao L.) populations based on chloroplast markers. Diversity 2021, 13(6): 249 https://www.mdpi.com/1424-2818/13/6/249/ htm https://doi.org/10.3390/d13060249 (IF = 1.402; Q3)
Abramov S, Boytsov A, Bykova D, Penzar DD, Yevshin I, Kolmykov SK, Fridman MV, Favorov AV, Vorontsov IE, Baulin E, Kolpakov F, Makeev VJ, Kulakovskiy IV. Landscape of allele-specific transcription factor binding in the human genome. //Nat Commun. 2021 May 12;12(1):2751. doi: 10.1038/s41467-021-23007-0
Kramina T.E., Meschersky I.G., Degtjareva G.V., Samigullin T.H., Belokon Y.S., Schanzer I.A. Genetic variation in the Lotus corniculatus complex (Fabaceae) in northern Eurasia as inferred from nuclear microsatellites and plastid trnL-trnF sequences // Botanical Journal of the Linnean Society. 2018;188(1):87-116.
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Stepchenkova EI, Zhuk AS, Cui J, Tarakhovskaya ER, Barbari SR, Shcherbakova PV, Polev DE, Fedorov R, Poliakov E, Rogozin IB, Lada AG, Pavlov YI Compensation for the absence of the catalytically active half of DNA polymerase ε in yeast by positively selected mutations in CDC28. // . Genetics. 2021 Apr 12:iyab060. doi: 10.1093/genetics/iyab060
Rabanus-Wallace MT, Hackauf B, Mascher M, Lux T, Wicker T, Gundlach H, Baez M, Houben A, Mayer KFX, Guo L, Poland J, Pozniak CJ, Walkowiak S, Melonek J, Praz CR, Schreiber M, Budak H, Heuberger M, Steuernagel B, Wulff B, Börner A, Byrns B, Čížková J, Fowler DB, Fritz A, Himmelbach A, Kaithakottil G, Keilwagen J, Keller B, Konkin D, Larsen J, Li Q, Myśków B, Padmarasu S, Rawat N, Sesiz U, Biyiklioglu-Kaya S, Sharpe A, Šimková H, Small I, Swarbreck D, Toegelová H, Tsvetkova N, Voylokov AV, Vrána J, Bauer E, Bolibok-Bragoszewska H, Doležel J, Hall A, Jia J, Korzun V, Laroche A, Ma XF, Ordon F, Özkan H, Rakoczy-Trojanowska M, Scholz U, Schulman AH, Siekmann D, Stojałowski S, Tiwari VK, Spannagl M, Stein N. Nat Genet. 2021 Apr;53(4):564-573. doi: 10.1038/s41588-021-00807-0. Epub 2021 Mar 18
Novikov AD, Lavrov KV, Kasianov AS, Topchiy MA, Gerasimova TV, Yanenko AS. Microbiol Resour Announc. 2021 Mar 11;10(10):e01314-20. doi: 10.1128/MRA.01314-20
Gil-Fernández A, Matveevsky S, Martín-Ruiz M, Ribagorda M, Parra MT, Viera A, Rufas JS, Kolomiets O, Bakloushinskaya I, Page J. Sex differences in the meiotic behavior of an XX sex chromosome pair in males and females of the mole vole Ellobius tancrei: turning an X into a Y chromosome?// Chromosoma. 2021 Apr 6. doi: 10.1007/s00412-021-00755-y
Danilova L, Wrangle J, Herman JG, Cope L. DNA-methylation for the detection and distinction of 19 human malignancies.// Epigenetics. 2021 Mar 5:1-11. doi: 10.1080/15592294.2021.1890885.
Konorov EA, Kurbakov KA, Minaev MY. Genome Sequencing of Kocuria varians Strain 80, Isolated from Starter Culture for Dry Sausage.// Microbiol Resour Announc. 2021 Feb 25;10(8):e00086-21. doi: 10.1128/MRA.00086-21.
Matveevsky S, Chassovnikarova T, Grishaeva T, Atsaeva M, Malygin V, Bakloushinskaya I, Kolomiets O. Kinase CDK2 in Mammalian Meiotic Prophase I: Screening for Hetero- and Homomorphic Sex Chromosomes.// Int J Mol Sci. 2021 Feb 17;22(4):1969. doi: 10.3390/ijms22041969.
Kolmykov S, Yevshin I, Kulyashov M, Sharipov R, Kondrakhin Y, Makeev VJ, Kulakovskiy IV, Kel A, Kolpakov F. GTRD: an integrated view of transcription regulation // Nucleic Acids Res. 2021 Jan 8;49(D1):D104-D111. doi: 10.1093/nar/gkaa1057.
Vorontsov IE, Egorov AA, Anisimova AS, Eliseeva IA, Makeev VJ, Gladyshev VN, Dmitriev SE, Kulakovskiy IV. Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates.// Methods Mol Biol. 2021;2252:269-294. doi: 10.1007/978-1-0716-1150-0_13.
Kim K, Wang X, Ragonnaud E, Bodogai M, Illouz T, DeLuca M, McDevitt RA, Gusev F, Okun E, Rogaev E, Biragyn A. Therapeutic B-cell depletion reverses progression of Alzheimer's disease. // Nat Commun. 2021 Apr 12;12(1):2185. doi: 10.1038/s41467-021-22479-4.
Spangenberg V, Arakelyan M, Galoyan E, Martirosyan I, Bogomazova A, Martynova E, de Bello Cioffi M, Liehr T, Al-Rikabi A, Osipov F, Petrosyan V, Kolomiets O. Meiotic synapsis of homeologous chromosomes and mismatch repair protein detection in the parthenogenetic rock lizard Darevskia unisexualis. // Mol Reprod Dev. 2021 Feb;88(2):119-127. doi: 10.1002/mrd.23450.
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Vorontsov IE, Egorov AA, Anisimova AS, Eliseeva IA, Makeev VJ, Gladyshev VN, Dmitriev SE, Kulakovskiy IV. Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates. // Methods Mol Biol. 2021;2252:269-294. doi: 10.1007/978-1-0716-1150-0_13.
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Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study. Ambrosini G, Vorontsov I, Penzar D, Groux R, Fornes O, Nikolaeva DD, Ballester B, Grau J, Grosse I, Makeev V, Kulakovskiy I, Bucher P. Genome Biol. 2020 May 11;21(1):114. doi: 10.1186/s13059-020-01996-3.
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Morozova I, Kasianov A, Bruskin S, Neukamm J, Molak M, Batieva E, Pudło A, Rühli FJ, Schuenemann VJ. New ancient Eastern European Yersinia pestis genomes illuminate the dispersal of plague in Europe.// Philos Trans R Soc Lond B Biol Sci. 2020 Nov 23;375(1812):20190569. doi: 10.1098/rstb.2019.0569. Epub 2020 Oct 5.
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A Multi-strain Potential Probiotic Formulation of GABA-Producing Lactobacillus plantarum 90sk and Bifidobacterium adolescentis 150 with Antidepressant Effects. Yunes RA, Poluektova EU, Vasileva EV, Odorskaya MV, Marsova MV, Kovalev GI, Danilenko VN. Probiotics Antimicrob Proteins. 2020 Sep;12(3):973-979. doi: 10.1007/s12602-019-09601-1.
FN3 protein fragment containing two type III fibronectin domains from B. longum GT15 binds to human tumor necrosis factor alpha in vitro. Dyakov IN, Mavletova DA, Chernyshova IN, Snegireva NA, Gavrilova MV, Bushkova KK, Dyachkova MS, Alekseeva MG, Danilenko VN. Anaerobe. 2020 Oct;65:102247. doi: 10.1016/j.anaerobe.2020.102247. Epub 2020 Aug 6.
Toxin-Antitoxin Systems: A Tool for Taxonomic Analysis of Human Intestinal Microbiota. Klimina KM, Voroshilova VN, Poluektova EU, Veselovsky VA, Yunes RA, Kovtun AS, Kudryavtseva AV, Kasianov AS, Danilenko VN. Toxins (Basel). 2020 Jun 12;12(6):388. doi: 10.3390/toxins12060388.
Transcriptomic dataset of Mycolicibacterium smegmatis exposed to an imidazo[1,2-b][1,2,4,5]tetrazine. Vatlin AA, Klimina KM, Frolova SG, Danilenko VN, Maslov DA. Data Brief. 2020 Jun 2;31:105805. doi: 10.1016/j.dib.2020.105805. eCollection
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Bioinformatics analysis of genes of Streptomyces xinghaiensis (fradiae) ATCC 19609 with a focus on mutations conferring resistance to oligomycin A and its derivatives. Vatlin AA, Bekker OB, Lysenkova LN, Shchekotikhin AE, Danilenko VN. J Glob Antimicrob Resist. 2020 Sep;22:47-53. doi: 10.1016/j.jgar.2020.01.026.
Antibiotic Resistance Genes in the Gut Microbiota of Children with Autistic Spectrum Disorder as Possible Predictors of the Disease. Kovtun AS, Averina OV, Alekseeva MG, Danilenko VN. Microb Drug Resist. 2020 Nov;26(11):1307-1320. doi: 10.1089/mdr.2019.0325.
Generation of an induced pluripotent stem cell line MNDINSi001-A from a patient with neonatal diabetes caused by a heterozygous INS mutation. Panova AV, Klementieva NV, Sycheva AV, Goliusova DV, Khokhlov NV, Zubkova NA, Tiulpakov AN, Kiselev SL. Stem Cell Res. 2020 Jul 25;47:101929. doi:10.1016/j.scr.2020.101929.
Locally Delivered Umbilical Cord Mesenchymal Stromal Cells Reduce Chronic Inflammation in Long-Term Nonhealing Wounds: A Randomized Study. Suzdaltseva Y, Zhidkih S, Kiselev SL, Stupin V. Stem Cells Int. 2020 Feb 14;2020:5308609. doi: 10.1155/2020/5308609. eCollection 2020.
Genome analysis of American minks reveals link of mutations in Ras-related protein-38 gene to Moyle brown coat phenotype. Manakhov AD, Mintseva MY, Andreev IA, Uralsky LI, Andreeva TV, Trapezov OV, Rogaev EI. Sci Rep. 2020 Sep 28;10(1):15876. doi: 10.1038/s41598-020-72239-5.
The curly coat phenotype of the Ural Rex feline breed is associated with a mutation in the lipase H gene. Manakhov AD, Andreeva TV, Rogaev EI. Anim Genet. 2020 Aug;51(4):584-589. doi: 10.1111/age.12958.
Genetic Association Between Alzheimer's Disease Risk Variant of the PICALM Gene and EEG Functional Connectivity in Non-demented Adults. Ponomareva N, Andreeva T, Protasova M, Konovalov R, Krotenkova M, Malina D, Mitrofanov A, Fokin V, Illarioshkin S, Rogaev E. Front Neurosci. 2020 Apr 16;14:324. doi: 10.3389/fnins.2020.00324. eCollection 2020.
Dissection of the Human T-Cell Receptor γ Gene Repertoire in the Brain and Peripheral Blood Identifies Age- and Alzheimer's Disease-Associated Clonotype Profiles. Aliseychik M, Patrikeev A, Gusev F, Grigorenko A, Andreeva T, Biragyn A, Rogaev E. Front Immunol. 2020 Jan 29;11:12. doi: 10.3389/fimmu.2020.00012. eCollection 2020.
Chromatin profiling of cortical neurons identifies individual epigenetic signatures in schizophrenia. Gusev FE, Reshetov DA, Mitchell AC, Andreeva TV, Dincer A, Grigorenko AP, Fedonin G, Halene T, Aliseychik M, Filippova E, Weng Z, Akbarian S, Rogaev EI. Transl Psychiatry. 2019 Oct 17;9(1):256. doi: 10.1038/s41398-019-0596-1.
Pettenkofer T., R. Finkeldey, M. Müller, K. V. Krutovsky, B. Vornam, L. Leinemann, O. Gailing 2020 Genetic variation of introduced red oak (Quercus rubra) stands in Germany compared to North American populations. European Journal of Forest Research 139(2): 321–331 2020 https://doi.org/10.1007/s10342-019-01256-5 (IF = 2.451; Q1)
Lebedev V. G., N. M. Subbotina, O. P. Maluchenko, T. N. Lebedeva, K. V. Krutovsky, K. A. Shestibratov (2020) Transferability and polymorphism of SSR markers located in flavonoid pathway genes in Fragaria and Rubus species. Genes 11(1): 11 https://doi.org/10.3390/genes11010011 (IF = 3.759; Q2)
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Breidenbach N., H. Wildhagen, C. Bandurski, L. Engelhardt, M. Büttner, O. Gailing, K. V. Krutovsky (2020) Phänotypische und genetische Reaktionen von Sequoia sempervirens Herkünften auf Frosttemperaturen. In Proceedings Liesebach M (ed) Forstpflanzenzüchtung für die Praxis: 6. Tagung der Sekti on Forstgenetik/Forstpflanzenzüchtung vom 16. Bis 18. September 2019 in Dresden: Tagungsband. Braunschweig: Johann Heinrich von Thünen-Institut, 296 p, Thünen Rep 76, doi:10.3220/rep1584625360000, pp. 200-210 (https://www.thuenen.de/media/publikationen/thuenen-report/Thuenen_Report_76.pdf)
Vidyagina E. O., N. M. Subbotina, V. A. Belyi, V. G. Lebedev, K. V. Krutovsky, K. A. Shestibratov (2020) Various effects of the expression of the xyloglucanase gene from Penicillium canescens in transgenic aspen under semi-natural conditions. BMC Plant Biol 20, 251 https://doi.org/10.1186/s12870-020-02469-2 (IF = 3.497; Q1)
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Breidenbach N., V. V. Sharov, O. Gailing, K. V. Krutovsky (2020) De novo transcriptome assembly of cold stressed clones of the hexaploid Sequoia sempervirens (D. Don) Endl. Scientific Data 7, 239 https://doi.org/10.1038/s41597-020-00576-1 (IF = 5.541; Q1)
Pettenkofer T.A., R. Finkeldey, M. Müller, K. V. Krutovsky, B. Vornam, L. Leinemann, O. Gailing Development of novel Quercus rubra chloroplast genome CAPS markers for haplotype identification. Silvae Genetica 2020; 69(1): 78-85 https://content.sciendo.com/view/journals/sg/69/1/article-p78.xml https://doi.org/10.2478/sg-2020-0011 (IF = 1.111; Q3)
Akulova V.S., V.V. Sharov, A.I. Aksyonova, Yu.A. Putintseva, N.V. Oreshkova, S.I. Feranchuk, D.A. Kuzmin, I.N. Pavlov, Y. A. Litovka, K.V. Krutovsky 2020 De novo sequencing, assembly and functional annotation of Armillaria borealis genome. BMC Genomics 21(Suppl 7): 534. https://doi.org/10.1186/s12864-020-06964-6 IF = 3.594; Q2)
Götz J., Konstantin V. Krutovsky, Ludger Leinemann, Markus Müller, Om P. Rajora, Oliver Gailing 2020 Chloroplast haplotypes of northern red oak (Quercus rubra L.) stands in Germany suggest their origin from northeastern Canada // Forests 11(9): 1025; https://doi.org/10.3390/f11091025 (IF = 2.221; Q1)
Putintseva Yu.A., E.I. Bondar, E.P. Simonov, V.V. Sharov, N.V. Oreshkova, D.A. Kuzmin, Yu.M. Konstantinov, V.N. Shmakov, V.I. Belkov, M.S. Sadovsky, O. Keech, K.V. Krutovsky 2020 Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known mitogenome. BMC Genomics 21: 654 https://doi.org/10.1186/s12864-020-07061-4 (IF = 3.594; Q2)
Kuchma O., D. Janz, L. Leinemann, A. Polle, K. V. Krutovsky, O. Gailing 2020 Hybrid and environmental effects on gene expression in poplar clones in pure and mixed with black locust stands. Forests 11(10): 1075 https://doi.org/10.3390/f11101075 (IF = 2.221; Q1)
Breidenbach N., O. Gailing, K. V. Krutovsky 2020 Genetic structure of coast redwood (Sequoia sempervirens [D. Don] Endl.) populations in and outside of the natural distribution range based on 2019nuclear and chloroplast microsatellite markers. PLoS One 15(12): e0243556. https://doi.org/10.1371/journal.pone.0243556 (IF = 2.740; Q2)
2019
Galoyan E., Bolshakova A., Abrahamyan M., Petrosyan R., Komarova V.1, Spangenberg V., Arakelyan M. Natural history of Valentin's rock lizard (Darevskia valentini) in Armenia // Zoological Research. 2019 Jul 18;40(4):277-292. DOI: https://doi.org/10.24272/j.issn.2095-8137.2019.036 PMID: 31310063
Shaikevich E., Bogacheva A., Rakova V., Ganushkina L., Ilinsky Yu., 2019. Wolbachia symbionts in mosquitoes: Intra- and intersupergroup recombinations, horizontal transmission and evolution. // Molecular Phylogenetics and Evolution. 134: 24-34, https://doi.org/10.1016/j.ympev.2019.01.020. (IF 3,5 Q1)
Shaikevich E, Bogacheva A., Ganushkina L. 2019. Dirofilaria and Wolbachia in mosquitoes (Diptera: Culicidae) in central European Russia and on the Black Sea coast. Parasite 26, 2. https://doi.org/10.1051/parasite/2019002 (IF 2,5 Q1)
Salnikova LE, Chernyshova EV, Anastasevich LA, Larin SS. Gene- and Disease-Based Expansion of the Knowledge on Inborn Errors of Immunity. Front Immunol. 2019 Oct 21;10:2475. doi: 10.3389/fimmu.2019.02475. eCollection 2019. PMID: 31695696. doi: 10.3389/fimmu.2019.02475. Impact Factor 4.716
Pneumonia: host susceptibility and shared genetics with pulmonary function and other traits. Khadzhieva MB, Kuzovlev AN, Salnikova LE. // Clin Exp Immunol. 2019 Sep 5. doi: 10.1111/cei.13367
Chromatin profiling of cortical neurons identifies individual epigenetic signatures in schizophrenia. Gusev FE, Reshetov DA, Mitchell AC, Andreeva TV, Dincer A, Grigorenko AP, Fedonin G, Halene T, Aliseychik M, Filippova E, Weng Z, Akbarian S, Rogaev EI. // Transl Psychiatry. 2019 Oct 17;9(1):256. doi: 10.1038/s41398-019-0596-1.
Tumor-derived Thymic stromal lymphopoietin expands bone marrow B-cell precursors in circulation to support metastasis.Ragonnaud E, Moritoh K, Bodogai M, Gusev F, Garaud S, Chen C, Wang X, Baljinnyam T, Becker KG, Maul RW, Willard-Gallo K, Rogaev E, Biragyn A. // Cancer Res. 2019 Oct 1. pii: canres.1058.2019. doi: 10.1158/0008-5472.CAN-19-1058. [Epub ahead of print]
Classification and monomer-by-monomer annotation dataset of suprachromosomal family 1 alpha satellite higher-order repeats in hg38 human genome assembly.Uralsky LI, Shepelev VA, Alexandrov AA, Yurov YB, Rogaev EI, Alexandrov IA. // Data Brief. 2019 Mar 8;24:103708. doi: 10.1016/j.dib.2019.103708. eCollection 2019 Jun.
Epigenetic-genetic chromatin footprinting identifies novel and subject-specific genes active in prefrontal cortex neurons.Gusev FE, Reshetov DA, Mitchell AC, Andreeva TV, Dincer A, Grigorenko AP, Fedonin G, Halene T, Aliseychik M, Goltsov AY, Solovyev V, Brizgalov L, Filippova E, Weng Z, Akbarian S, Rogaev EI. // FASEB J. 2019 Jul;33(7):8161-8173. doi: 10.1096/fj.201802646R.
Genome analysis identifies the mutant genes for common industrial Silverblue and Hedlund white coat colours in American mink.Manakhov AD, Andreeva TV, Trapezov OV, Kolchanov NA, Rogaev EI. // Sci Rep. 2019 Mar 14;9(1):4581. doi: 10.1038/s41598-019-40918-7.
Differentially Methylated Super-Enhancers Regulate Target Gene Expression in Human Cancer. Flam EL, Danilova L, Kelley DZ, Stavrovskaya E, Guo T, Considine M, Qian J, Califano JA, Favorov A, Fertig EJ, Gaykalova DA.// Sci Rep. 2019 Oct 21;9(1):15034. doi: 10.1038/s41598-019-51018-x.
Allele-specific nonstationarity in evolution of influenza A virus surface proteins. Popova AV, Safina KR, Ptushenko VV, Stolyarova AV, Favorov AV, Neverov AD, Bazykin GA. // Proc Natl Acad Sci U S A. 2019 Oct 15;116(42):21104-21112. doi: 10.1073/pnas.1904246116.
Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data. Davis-Marcisak EF, Sherman TD, Orugunta P, Stein-O'Brien GL, Puram SV, Roussos Torres ET, Hopkins AC, Jaffee EM, Favorov AV, Afsari B, Goff LA, Fertig EJ. // Cancer Res. 2019 Oct 1;79(19):5102-5112. doi: 10.1158/0008-5472.CAN-18-3882.
Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers. Ando M, Saito Y, Xu G, Bui NQ, Medetgul-Ernar K, Pu M, Fisch K, Ren S, Sakai A, Fukusumi T, Liu C, Haft S, Pang J, Mark A, Gaykalova DA, Guo T, Favorov AV, Yegnasubramanian S, Fertig EJ, Ha P, Tamayo P, Yamasoba T, Ideker T, Messer K, Califano JA. // Nat Commun. 2019 May 29;10(1):2415. doi: 10.1038/s41467-019-10557-7.
Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers. Ando M, Saito Y, Xu G, Bui NQ, Medetgul-Ernar K, Pu M, Fisch K, Ren S, Sakai A, Fukusumi T, Liu C, Haft S, Pang J, Mark A, Gaykalova DA, Guo T, Favorov AV, Yegnasubramanian S, Fertig EJ, Ha P, Tamayo P, Yamasoba T, Ideker T, Messer K, Califano JA. // Nat Commun. 2019 May 16;10(1):2188. doi: 10.1038/s41467-019-09937-w.
Breidenbach N., O. Gailing, K. V. Krutovsky 2019 Development of novel polymorphic nuclear and chloroplast microsatellite markers in coast redwood (Sequoia sempervirens). Plant Genetic Resources 17(3): 293–297 doi:10.1017/S147926211800045X https://doi.org/10.1017/S147926211800045X Published online: 04 December 2018 (IF = 0.869/0.813; Q4/Q2)
Kryvokhyzha M. V., K. V. Krutovsky, N. M. Rashydova 2019 Expression of flowering genes in Arabidopsis thaliana under acute and chronic irradiation. International Journal of Radiation Biology 95(5): 626–634 doi: 10.1080/09553002.2019.1562251 Published online: 3 January 2019 https://www.tandfonline.com/doi/pdf/10.1080/09553002.2019.1562251 (IF = 2.368/2.100; Q2/Q1)
Moler R. V. E., A. Abakir, M. Eleftheriou, J. S. Johnson, K. V. Krutovsky, L. C. Lewis, A. Ruzov, A. V. Whipple, O. P. Rajora, (2019) Population Epigenomics: Advancing Understanding of Phenotypic Plasticity, Acclimation, Adaptation and Diseases. Chapter in Population Genomics: Concepts, Approaches and Applications (Edited by Om Rajora), Springer, Cham, pp. 179-260. doi: 10.1007/13836_2018_59 (https://doi.org/10.1007/13836_2018_59)
Balkenhol N., Dudaniec R. Y., Krutovsky K. V., Johnson J. S., Cairns D. M., Segelbacher G., Selkoe K. A., von der Heyden S., Wang I. J., Selmoni O., Joost S. (2019) Landscape Genomics: Understanding Relationships Between Environmental Heterogeneity and Genomic Characteristics of Populations. Chapter in Population Genomics: Concepts, Approaches and Applications (Edited by Om Rajora), Springer, Cham, pp. 261-322. doi: 10.1007/13836_2017_2 (https://link.springer.com/chapter/10.1007/13836_2017_2)
Johnson, J. S., K. V. Krutovsky, O. P. Rajora, K. D. Gaddis, D. M. Cairns (2019) Advancing Biogeography through Population Genomics. Chapter in Population Genomics: Concepts, Approaches and Applications (Edited by Om Rajora), Springer, Cham, pp. 539-585. doi: 10.1007/13836_2018_39 (https://link.springer.com/chapter/10.1007/13836_2018_39)
Bondar E. I., Y. A. Putintseva, N. V. Oreshkova, K. V. Krutovsky 2019 Siberian larch (Larix sibirica Ledeb.) chloroplast genome and development of polymorphic chloroplast markers. BMC Bioinformatics 20(Suppl. 1): 38 doi: 10.1186/s12859-018-2571-x https://doi.org/10.1186/s12859-018-2571-x Published: 5 February 2019 (IF = 3.242/3.213; Q1)
Kuzmin, D. A., S. I. Feranchuk, V. V. Sharov, A. N. Cybin, S. V. Makolov, Y. A. Putintseva, N. V. Oreshkova, K. V. Krutovsky 2019 Stepwise large genome assembly approach: A case of Siberian larch (Larix sibirica Ledeb.). BMC Bioinformatics 20(Suppl. 1): 37 doi: 10.1186/s12859-018-2570-y https://doi.org/10.1186/s12859-018-2570-y Published: 5 February 2019 (IF = 3.242/3.213; Q1)
Semizer-Cuming D., K. V. Krutovsky, Y. N. Baranchikov, E. D. Kjӕr, C. G. Williams 2019 Saving the world’s ash forests calls for international cooperation now. Nature Ecology and Evolution 3(2): 141–144 https://doi.org/10.1038/s41559-018-0761-6 Published online: 10 December 2018 (IF = 12.543/12.561; Q1)
Pettenkofer T.A., K. Burkardt, C. Ammer, T. Vor, R. Finkeldey, M. Müller, K. Krutovsky, B. Vornam, L. Leinemann, O. Gailing 2019 Genetic diversity and differentiation of introduced red oak (Quercus rubra) in Germany in comparison with reference native North American populations. European Journal of Forest Research 138(2): 275–285 Published online: 06 February 2019 https://doi.org/10.1007/s10342-019-01167-5 (IF = 2.451/2.581; Q1)
Semerikov V. L., S. A. Semerikova, Y. A. Putintseva, N. V. Oreshkova, K. V. Krutovsky 2019 Mitochondrial DNA in Siberian conifers indicates multiple postglacial colonization centers. Canadian Journal of Forest Research. 49(8): 875–883 Published on the web 04 March 2019 https://doi.org/10.1139/cjfr-2018-0498 (IF = 1.812/2.162; Q2/Q1)
Mosca E., F. Cruz, J. Gómez Garrido, L. Bianco, C. Rellstab, S. Brodbeck, K. Csilléry, B. Fady, M. Fladung, B. Fussi, D. Gömöry, S. C. González-Martínez, D. Grivet, M. Gut, O. K. Hansen, K. Heer, Z. Kaya, K. V. Krutovsky, B. Kersten, S. Liepelt, L. Opgenoorth, C. Sperisen, K. K. Ullrich, G. G. Vendramin, M. Westergren, B. Ziegenhagen, T. Alioto, F. Gugerli, B. Heinze, M. Höhn, M. Troggio, D. B. Neale, 2019. A reference genome sequence for the European silver fir (Abies alba Mill.): a community-generated genomic resource. G3: Genes Genomes Genetics 9(7): 2039-2049 https://doi.org/10.1534/g3.119.400083 (IF = 2.781/3.026; Q3/Q1)
Kolesnikova A. I., Y. A. Putintseva, E. P. Simonov, V. V. Biriukov, N. V. Oreshkova, I. N. Pavlov, V. V. Sharov, D. A. Kuzmin, J. Anderson, K. V. Krutovsky 2019 Mobile genetic elements explain size variation in the mitochondrial genomes of four closely-related Armillaria species. BMC Genomics 20:351 https://doi.org/10.1186/s12864-019-5732-z doi: 10.1186/s12864-019-5732-z (IF = 3.594/4.093; Q2/Q1)
Lu M., C. A. Loopstra, K. V. Krutovsky 2019 Detecting the genetic basis of local adaptation in loblolly pine (Pinus taeda L.) using whole exome-wide genotyping and an integrative landscape genomics analysis approach. Ecology and Evolution 9(12): 6798-6809 https://doi.org/10.1002/ece3.5225 (IF = 2.392/2.749; Q2/Q1)
Lebedev V. G., Krutovsky K. V., Shestibratov K. A. 2019 …Fell Upas Sits, the Hydra-Tree of Death, or the Phytotoxicity of Trees. Molecules 24(8): 1636; https://doi.org/10.3390/molecules24081636 (IF = 3.267/3.589; Q2/Q1)
Tarieiev A. S., I. Olshanskyi, O. Gailing, K. V. Krutovsky 2019 Taxonomy of dark- and white-barked birches related to Betula pendula Roth and B. pubescens Ehrh. (Betulaceae) in Ukraine based on both morphological traits and DNA markers. Botanical Journal of the Linnean Society 191(1): 142–154 https://doi.org/10.1093/botlinnean/boz031 (IF = 2.076/2.557; Q2/Q1)
Lebedev V. G., N. M. Subbotina, O. P. Maluchenko, K. V. Krutovsky, K. A. Shestibratov (2019) Assessment of genetic diversity in differently colored raspberry cultivars using SSR markers located in flavonoid biosynthesis genes. Agronomy 9(9): 518; https://doi.org/10.3390/agronomy9090518 IF = 2.259; Q1)
Chiveu J.C., M. Mueller, K. V. Krutovsky, K. Kehlenbeck, E. Pawelzik, M. Naumann 2019 Genetic diversity of common guava in Kenya: an underutilized naturalized fruit species. Fruits 74(5): 236–248 https://doi.org/10.17660/th2019/74.5.4 (IF = 0.579/1.054; Q4/Q3)
de Melo Moura C. C., Brambach F., Bado K. J. H., Krutovsky K. V., Kreft H., Tjitrosoedirdjo S. S., Siregar I. Z., Gailing O. Integrating DNA barcoding and traditional taxonomy for the identification of dipterocarps in remnant lowland forests of Sumatra. Plants 8(11), 461; https://doi.org/10.3390/plants8110461 (IF = 2.762; Q1)
Lu M., K. V. Krutovsky, C. A. Loopstra 2019 Predicting adaptive genetic variation of loblolly pine (Pinus taeda L.) populations under projected future climates based on multivariate models. Journal of Heredity 110(7): 857–865 https://doi.org/10.1093/jhered/esz065 (IF = 2.809/2.791; Q2/Q1)
Babushkina E. A., Zhirnova D. F., Belokopytova L. V., Tychkov I. I., Vaganov E. A., Krutovsky K. V. 2019 Response of four tree species to changing climate in a moisture-limited area of South Siberia. Forests 10(11): 999 https://doi.org/10.3390/f10110999 (IF = 2.221/2.484; Q1)
Lebedev V. G., Krutovsky K. V., Shestibratov K. A. 2019 Effect of phosphinothricin on transgenic downy birch (Betula pubescens Ehrh.) containing bar or GS1 genes. Forests 10(12): 1067; https://doi.org/10.3390/f10121067 (IF = 2.221/2.484; Q1)
Yakovlev I. A., D. Gackowski, A. Abakir, M. Viejo, A. Ruzov, R. Oliński, C. G. Fossdal, K. V. Krutovsky 2019 Mass spectrometry reveals the presence of specific set of epigenetic DNA modifications in the Norway spruce genome. Scientific Report 9: 19314 https://www.nature.com/articles/s41598-019-55826-z 10.1038/s41598-019-55826-z (IF = 3.998/4.576; Q1)
RNA-aptamers-As targeted inhibitors of protein functions in plants. Abdeeva IA, Maloshenok LG, Pogorelko GV, Mokrykova MV, Bruskin SA. // J Plant Physiol. 2019 Jan;232:127-129. doi: 10.1016/j.jplph.2018.10.026.
Sequencing and Analysis of Three Mycobacterium tuberculosis Genomes of the B0/N-90 Sublineage.
Zakharevich NV, Zaychikova MV, Shur KV, Bekker OB, Maslov DA, Danilenko VN. // Microbiol Resour Announc. 2019 Sep 26;8(39). pii: e00796-19. doi: 10.1128/MRA.00796-19.
Klimina KM, Batotsyrenova EG, Yunes RA, Gilyaeva EH, Poluektova EU, Kostrova TA, Kudryavtseva AV, Odorskaya MV, Kashuro VA, Kasianov AS, Ivanov MB, Danilenko VN. // BMC Microbiol. 2019 Jul 12;19(1):160. doi: 10.1186/s12866-019-1535-2.
Alekseeva MG, Boyko KM, Nikolaeva AY, Mavletova DA, Rudakova NN, Zakharevich NV, Korzhenevskiy DA, Ziganshin RH, Popov VO, Danilenko VN. // Arch Biochem Biophys. 2019 Aug 15;671:111-122. doi: 10.1016/j.abb.2019.06.008.
Synthesis and antimycobacterial activity of imidazo[1,2-b][1,2,4,5]tetrazines.
Maslov DA, Korotina AV, Shur KV, Vatlin AA, Bekker OB, Tolshchina SG, Ishmetova RI, Ignatenko NK, Rusinov GL, Charushin VN, Danilenko VN. // Eur J Med Chem. 2019 Sep 15;178:39-47. doi: 10.1016/j.ejmech.2019.05.081.
Lysenkova LN, Saveljev OY, Omelchuk OA, Zatonsky GV, Korolev AM, Grammatikova NE, Bekker OB, Danilenko VN, Dezhenkova LG, Mavletova DA, Scherbakov AM, Shchekotikhin AE. // Nat Prod Res. 2019 May 10:1-9. doi: 10.1080/14786419.2019.1608540. [Epub ahead of print]
Vatlin AA, Shur KV, Danilenko VN, Maslov DA. // Microbiol Resour Announc. 2019 Apr 18;8(16). pii: e00263-19. doi: 10.1128/MRA.00263-19.
Liu J, Shi W, Zhang S, Hao X, Maslov DA, Shur KV, Bekker OB, Danilenko VN, Zhang Y. // Front Microbiol. 2019 Feb 19;10:216. doi: 10.3389/fmicb.2019.00216. eCollection 2019.
Neuropeptides in the microbiota-brain axis and feeding behavior in autism spectrum disorder.
Fetissov SO, Averina OV, Danilenko VN. // Nutrition. 2019 May;61:43-48. doi: 10.1016/j.nut.2018.10.030.
Bekker OB, Vatlin AA, Zakharevich NV, Lysenkova LN, Shchekotikhin AE, Danilenko VN. // Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01531-18. doi: 10.1128/MRA.01531-18. eCollection 2019 Jan.
Lysenkoism Against Genetics: The Meeting of the Lenin All-Union Academy of Agricultural Sciences of August 1948, Its Background, Causes, and Aftermath. Borinskaya SA, Ermolaev AI, Kolchinsky EI.// Genetics. 2019 May;212(1):1-12. doi: 10.1534/genetics.118.301413.
Changes in Biological Pathways During 6,000 Years of Civilization in Europe.
Chekalin E, Rubanovich A, Tatarinova TV, Kasianov A, Bender N, Chekalina M, Staub K, Koepke N, Rühli F, Bruskin S, Morozova I. // Mol Biol Evol. 2019 Jan 1;36(1):127-140. doi: 10.1093/molbev/msy201
Heteroplasmic Variants of Mitochondrial DNA in Atherosclerotic Lesions of Human Aortic Intima.
Sobenin IA, Zhelankin AV, Khasanova ZB, Sinyov VV, Medvedeva LV, Sagaidak MO, Makeev VJ, Kolmychkova KI, Smirnova AS, Sukhorukov VN, Postnov AY, Grechko AV, Orekhov AN. // Biomolecules. 2019 Sep 6;9(9). pii: E455. doi: 10.3390/biom9090455.
Klimina KM, Kasianov AS, Poluektova EU, Emelyanov KV, Voroshilova VN, Zakharevich NV, Kudryavtseva AV, Makeev VJ, Danilenko VN.// PeerJ. 2019 Mar 4;7:e6554. doi: 10.7717/peerj.6554. eCollection 2019.
Odintsova TI, Slezina MP, Istomina EA, Korostyleva TV, Kasianov AS, Kovtun AS, Makeev VJ, Shcherbakova LA, Kudryavtsev AM.// PeerJ. 2019 Jan 8;7:e6125. doi: 10.7717/peerj.6125. eCollection 2019.
The genetic history of admixture across inner Eurasia.
Jeong C, Balanovsky O, Lukianova E, Kahbatkyzy N, Flegontov P, Zaporozhchenko V, Immel A, Wang CC, Ixan O, Khussainova E, Bekmanov B, Zaibert V, Lavryashina M, Pocheshkhova E, Yusupov Y, Agdzhoyan A, Koshel S, Bukin A, Nymadawa P, Turdikulova S, Dalimova D, Churnosov M, Skhalyakho R, Daragan D, Bogunov Y, Bogunova A, Shtrunov A, Dubova N, Zhabagin M, Yepiskoposyan L, Churakov V, Pislegin N, Damba L, Saroyants L, Dibirova K, Atramentova L, Utevska O, Idrisov E, Kamenshchikova E, Evseeva I, Metspalu M, Outram AK, Robbeets M, Djansugurova L, Balanovska E, Schiffels S, Haak W, Reich D, Krause J. // Nat Ecol Evol. 2019 Jun;3(6):966-976. doi: 10.1038/s41559-019-0878-2.
Genome-wide sequence analyses of ethnic populations across Russia.
Zhernakova DV, Brukhin V, Malov S, Oleksyk TK, Koepfli KP, Zhuk A, Dobrynin P, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Gorbunova A, Chernyaeva E, Shevchenko A, Kolchanova S, Komissarov A, Simonov S, Antonik A, Logachev A, Polev DE, Pavlova OA, Glotov AS, Ulantsev V, Noskova E, Davydova TK, Sivtseva TM, Limborska S, Balanovsky O, Osakovsky V, Novozhilov A, Puzyrev V, O'Brien SJ. // Genomics. 2019 Mar 19. pii: S0888-7543(18)30741-9. doi: 10.1016/j.ygeno.2019.03.007.
Wang CC, Reinhold S, Kalmykov A, Wissgott A, Brandt G, Jeong C, Cheronet O, Ferry M, Harney E, Keating D, Mallick S, Rohland N, Stewardson K, Kantorovich AR, Maslov VE, Petrenko VG, Erlikh VR, Atabiev BC, Magomedov RG, Kohl PL, Alt KW, Pichler SL, Gerling C, Meller H, Vardanyan B, Yeganyan L, Rezepkin AD, Mariaschk D, Berezina N, Gresky J, Fuchs K, Knipper C, Schiffels S, Balanovska E, Balanovsky O, Mathieson I, Higham T, Berezin YB, Buzhilova A, Trifonov V, Pinhasi R, Belinskij AB, Reich D, Hansen S, Krause J, Haak W.// Nat Commun. 2019 Feb 4;10(1):590. doi: 10.1038/s41467-018-08220-8.
Ali, H. B. M., A. Abubakari, M. Wiehle, K. V. Krutovsky, 2018 Gene-specific sex-linked genetic markers in date palm (Phoenix dactylifera L.). Genetic Resources and Crop Evolution 65(1): 1-10 https://doi.org/10.1007/s10722-017-0564-7 (IF = 1.294; Q1/2)
Pavlov, I. N., Y. A Litovka, T. V. Ryazanova, N. A. Chuprova, E. A. Litvinova, Y. A. Putintseva, U. Kües, K. V. Krutovsky, 2018 Phylogenetic relationships, pathogenic traits, and wood-destroying properties of Porodaedalea niemelaei M. Fischer isolated in the northern forest limit of Larix gmelinii open woodlands in the permafrost area. Journal of Siberian Federal University. Biology 11(1): 30-48 DOI: 10.17516/1997-1389-0039 http://elib.sfu-kras.ru/bitstream/2311/70290/8/03_Pavlov_15_05.pdf (IF = 0.316; Q4)
Kornienko I.V., Faleeva T.G., Oreshkova N.V., Grigoriev S.E., Grigoreva L.V., Simonov E.P., Kolesnikova A.I., Putintseva Yu.A., Krutovsky K.V. 2018 Complete mitochondrial genome of a woolly mammoth (Mammuthus primigenius) from Maly Lyakhovsky Island (New Siberian Islands, Russia) and its phylogenetic assessment. Mitochondrial DNA Part B. Resources 3(2): 596-598 http://dx.doi.org/10.1080/23802359.2018.1473721 (IF = 0.490; Q4)
Liu, C. L. C., O. Kuchma, K. V. Krutovsky 2018 Mixed-species versus monocultures in plantation forestry: Development, benefits, ecosystem services and perspectives for the future. Global Ecology and Conservation 15: e00419. doi: 10.1016/j.gecco.2018.e00419. https://doi.org/10.1016/j.gecco.2018.e00419 (IF = 1.81; Q2)
Müller M., L. Cuervo-Alarcon, O. Gailing, Rajendra K.C., M. S. Chhetri, S. Seifert, M. Arend, K. V. Krutovsky, R. Finkeldey 2018 Genetic Variation of European Beech Populations and Their Progeny from Northeast Germany to Southwest Switzerland. Forests 9(8): 469. doi:10.3390/f9080469. https://doi.org/10.3390/f9080469 Published: 1 August 2018 (IF = 2.221; Q1)
Nawaz M. A., K. V. Krutovsky, M. Müller, O. Gailing, A. A. Khan, A. Buerkert, M. Wiehle 2018 Morphological and Genetic Diversity of Sea Buckthorn (Hippophae rhamnoides L.) in the Karakoram Mountains of Northern Pakistan. Diversity 10(3): 76; https://doi.org/10.3390/d10030076 Published: 30 July 2018 (IF = 2.047; Q1)
Semerikov, V.L., S.A. Semerikova, Y.A. Putintseva, V. V. Tarakanov, I. V. Tikhonova, A. I. Vidyakin, N.V. Oreshkova, and K.V. Krutovsky, 2018 Colonization history of Scots pine in Eastern Europe and North Asia based on mitochondrial DNA variation. Tree Genetics & Genomes 14:8 https://doi.org/10.1007/s11295-017-1222-0 Published: 8 Jan 2018 (IF = 1.862 Q1)
Cuervo-Alarcon L., M. Arend, M. Müller, C. Sperisen, R. Finkeldey, K. V. Krutovsky 2018 Genetic variation and signatures of natural selection in populations of European beech (Fagus sylvatica L.) along precipitation gradients. Tree Genetics & Genomes 14:84 https://doi.org/10.1007/s11295-018-1297-2 First Online: 30 October 2018 (IF = 1.862 Q1)
Lu M., C. M. Seeve, C. A. Loopstra, K. V. Krutovsky 2018 Exploring the genetic basis of gene transcript abundance and metabolite level in loblolly pine (Pinus taeda L.) using association mapping and network construction. BMC Genetics 19:100 https://doi.org/10.1186/s12863-018-0687-7 Published: 6 November 2018 (IF = 2.469; Q1)
Shestibratov K. A., O. Yu. Baranov, N. M. Subbotina, V. G. Lebedev, S. V. Panteleev, K. V. Krutovsky, V. E. Padutov 2018 Early detection and identification of the main fungal pathogens for resistance evaluation of new genotypes of forest trees. Forests 9(12): 732; https://doi.org/10.3390/f9120732 Published: 23 November 2018 (IF = 2.221; Q1)
Caré O., M. Müller, B. Vornam, A. M. Höltken, K. Kahlert, K. V. Krutovsky, O. Gailing, L. Leinemann 2018 Hight morphological differentiation in crown architecture is weakly reflected in the population genetic structure of German Norway spruce stands. Forests 9(12): 752 doi: 10.3390/f9120752 https://www.mdpi.com/1999-4907/9/12/752/htm Published: Dec 4, 2018 (IF = 2.221; Q1)
Simonov E., A. Lisachov, N. Oreshkova, K. V. Krutovsky 2018 The mitogenome of Elaphe bimaculata (Reptilia: Colubridae) has never been published: a case with the complete mitochondrial genome of E. dione. Acta Herpetologica 13(2): 185-189, Published: Dec 1, 2018 https://doi.org/10.13128/Acta_Herpetol-23394 doi: 10.13128/Acta_Herpetol-23394 (IF = 0.729; Q3)
Tambets K, Yunusbayev B, Hudjashov G, Ilumäe AM, Rootsi S, Honkola T, Vesakoski O, Atkinson Q, Skoglund P, Kushniarevich A, Litvinov S, Reidla M, Metspalu E, Saag L, Rantanen T, Karmin M, Parik J, Zhadanov SI, Gubina M, Damba LD, Bermisheva M, Reisberg T, Dibirova K, Evseeva I, Nelis M, Klovins J, Metspalu A, Esko T, Balanovsky O, Balanovska E, Khusnutdinova EK, Osipova LP, Voevoda M, Villems R, Kivisild T, Metspalu M. Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations. // Genome Biol. 2018 Sep 21;19(1):139. doi: 10.1186/s13059-018-1522-1.
Extraordinary centromeres: differences in the meiotic chromosomes of two rock lizards species Darevskia portschinskii and Darevskia raddei. Spangenberg V, Arakelyan M, Galoyan E, Pankin M, Petrosyan R, Stepanyan I, Grishaeva T, Danielyan F, Kolomiets O. // PeerJ. 2019 Jan 30;7:e6360. doi: 10.7717/peerj.6360. eCollection 2019.
Effects of early social deprivation on epigenetic statuses and adaptive behavior of young children: A study based on a cohort of institutionalized infants and toddlers. Naumova OY, Rychkov SY, Kornilov SA, Odintsova VV, Anikina VО, Solodunova MY, Arintcina IA, Zhukova MA, Ovchinnikova IV, Burenkova OV, Zhukova OV, Muhamedrahimov RJ, Grigorenko EL. // PLoS One. 2019 Mar 26;14(3):e0214285. doi: 10.1371/journal.pone.0214285.
2018
Zolotarenko A, Chekalin E, Piruzian E, Bruskin S. FRA1 mediates the activation of keratinocytes: Implications for the development of psoriatic plaques. // Biochim Biophys Acta Mol Basis Dis. 2018 Sep 14;1864(12):3726-3734. doi: 10.1016/j.bbadis.2018.09.016.
Abdeeva IA, Pogorelko GV, Maloshenok LG, Mokrykova MV, Fursova OV, Bruskin SA. Search for Partner Proteins of A. thaliana Immunophilins Involved in the Control of Plant Immunity. // Molecules. 2018 Apr 19;23(4). pii: E953. doi: 10.3390/molecules23040953.
Khalilipour N, Baranova A, Jebelli A, Heravi-Moussavi A, Bruskin S, Abbaszadegan MR. Familial Esophageal Squamous Cell Carcinoma with damaging rare/germline mutations in KCNJ12/KCNJ18 and GPRIN2 genes. // Cancer Genet. 2018 Feb;221:46-52. doi: 10.1016/j.cancergen.2017.11.011
Vorontsov IE, Fedorova AD, Yevshin IS, Sharipov RN, Kolpakov FA, Makeev VJ, Kulakovskiy IV. Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data. // BMC Res Notes. 2018 Oct 23;11(1):756. doi: 10.1186/s13104-018-3856-x.
Orekhov AN, Oishi Y, Nikiforov NG, Zhelankin AV, Dubrovsky L, Sobenin IA, Kel A, Stelmashenko D, Makeev VJ, Foxx K, Jin X, Kruth HS, Bukrinsky M. Modified Ldl Particles Activate Inflammatory Pathways In Monocyte-Derived Macrophages: Transcriptome Analysis. // Curr Pharm Des. 2018 Sep 11. doi: 10.2174/1381612824666180911120039.
Orekhov AN, Pushkarsky T, Oishi Y, Nikiforov NG, Zhelankin AV, Dubrovsky L, Makeev VJ, Foxx K, Jin X, Kruth HS, Sobenin IA, Sukhorukov VN, Zakiev ER, Kontush A, Le Goff W, Bukrinsky M. HDL activates expression of genes stimulating cholesterol efflux in human monocyte-derived macrophages. // Exp Mol Pathol. 2018 Oct;105(2):202-207. doi: 10.1016/j.yexmp.2018.08.003.
Babenko VN, Afonnikov DA, Ignatieva EV, Klimov AV, Gusev FE, Rogaev EI. Haplotype analysis of APOE intragenic SNPs. // BMC Neurosci. 2018 Apr 19;19(Suppl 1):16. doi: 10.1186/s12868-018-0413-4
Pilsner JR, Shershebnev A, Medvedeva YA, Suvorov A, Wu H, Goltsov A, Loukianov E, Andreeva T, Gusev F, Manakhov A, Smigulina L, Logacheva M, Shtratnikova V, Kuznetsova I, Speranskiy-Podobed P, Burns JS, Williams PL, Korrick S, Lee MM, Rogaev E, Hauser R, Sergeyev O Peripubertal serum dioxin concentrations and subsequent sperm methylome profiles of young Russian adults. // Reprod Toxicol. 2018 Jun;78:40-49. doi: 10.1016/j.reprotox.2018.03.007
Saik OV, Demenkov PS, Ivanisenko TV, Bragina EY, Freidin MB, Goncharova IA, Dosenko VE, Zolotareva OI, Hofestaedt R, Lavrik IN, Rogaev EI, Ivanisenko VA. Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks. // BMC Med Genomics. 2018 Feb 13;11(Suppl 1):15. doi: 10.1186/s12920-018-0331-4.
Gunbin KV, Ponomarenko MP, Suslov VV, Gusev F, Fedonin GG, Rogaev EI. Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation. // Mol Neurobiol. 2018 Mar;55(3):1871-1904. doi: 10.1007/s12035-017-0427-4
Kozlov EN, Martynova EU, Popenko VI, Schal C, Mukha DV. Intracellular Localization of Blattella germanica Densovirus (BgDV1) Capsid Proteins. // Viruses. 2018 Jul 14;10(7). pii: E370. doi: 10.3390/v10070370.
Miteva AS, Gaydukov AE, Shestopalov VI, Balezina OP. Mechanism of P2X7 receptor-dependent enhancement of neuromuscular transmission in pannexin 1 knockout mice. // Purinergic Signal. 2018 Oct 25. doi: 10.1007/s11302-018-9630-7.
Stepchenkova EI, Shiriaeva AA, Pavlov YI. Deletion of the DEF1 gene does not confer UV-immutability but frequently leads to self-diploidization in yeast Saccharomyces cerevisiae. // DNA Repair (Amst). 2018 Oct;70:49-54. doi: 10.1016/j.dnarep.2018.08.026
Zubritskiy A, Medvedeva YA. DNA sequence features in the establishing of H3K27ac. // Version 2. F1000Res. 2018 Feb 8 [revised 2018 Jan 1];7:165. doi:10.12688/f1000research.13441.2. eCollection 2018
Matveevsky S., Ivanitskaya E., Spangenberg V., Bakloushinskaya I., Kolomiets O. Reorganization of the Y Chromosomes Enhances Divergence in Israeli Mole Rats Nannospalax ehrenbergi (Spalacidae, Rodentia): Comparative Analysis of Meiotic and Mitotic Chromosomes. Genes 2018, 9, 272. doi:10.3390/genes9060272. http://www.mdpi.com/2073-4425/9/6/272
Matveevsky S, Kolomiets O, Bogdanov A, Hakhverdyan M, Bakloushinskaya I. Chromosomal Evolution in Mole Voles Ellobius (Cricetidae, Rodentia): Bizarre Sex Chromosomes, Variable Autosomes and Meiosis. // Genes (Basel). 2017. 8(11): E306. IF=3,6
Matveevsky SN, Pavlova SV, Atsaeva MM, Searle JB, Kolomiets OL. Dual mechanism of chromatin remodeling in the common shrew sex trivalent (XY1Y2). // Comp Cytogenet. 2017. 11(4):727-745. IF - 1,151
Blagodatskikh KA, Kramarov VM, Barsova EV, Garkovenko AV, Shcherbo DS, Shelenkov AA, Ustinova VV, Tokarenko MR, Baker SC, Kramarova TV, Ignatov KB. Improved DOP-PCR (iDOP-PCR): A robust and simple WGA method for efficient amplification of low copy number genomic DNA. // PLoS One. 2017 Sep 11;12(9):e0184507. doi: 10.1371/journal.pone.0184507 Импакт фактор - 2.806
Bondar N, Bryzgalov L, Ershov N, Gusev F, Reshetnikov V, Avgustinovich D, Tenditnik M, Rogaev E, Merkulova T. Molecular Adaptations to Social Defeat Stress and Induced Depression in Mice. // Mol Neurobiol. 2017 May 12. doi: 10.1007/s12035-017-0586-3.
Lukiw WJ, Rogaev EI. Genetics of Aggression in Alzheimer's Disease (AD). // Front Aging Neurosci. 2017 Apr 10;9:87. doi: 10.3389/fnagi.2017.00087.
Zolotarenko A, Chekalin E, Mehta R, Baranova A, Tatarinova TV, Bruskin S. Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments. // Methods Mol Biol. 2017;1613:355-370. doi: 10.1007/978-1-4939-7027-8_14.
Zhabagin M, Balanovska E, Sabitov Z, Kuznetsova M, Agdzhoyan A, Balaganskaya O, Chukhryaeva M, Markina N, Romanov A, Skhalyakho R, Zaporozhchenko V, Saroyants L, Dalimova D, Davletchurin D, Turdikulova S, Yusupov Y, Tazhigulova I, Akilzhanova A, Tyler-Smith C, Balanovsky O. The Connection of the Genetic, Cultural and Geographic Landscapes of Transoxiana. // Sci Rep. 2017 Jun 8;7(1):3085. doi: 10.1038/s41598-017-03176-z.
Khadzhieva MB, Kolobkov DS, Kamoeva SV, Salnikova LE. Expression changes in pelvic organ prolapse: a systematic review and in silico study. // Sci Rep. 2017 Aug 9;7(1):7668. doi: 10.1038/s41598-017-08185-6.
de Rie D, Abugessaisa I, Alam T, Arner E, Arner P, Ashoor H, Åström G, Babina M, Bertin N, Burroughs AM, Carlisle AJ, Daub CO, Detmar M, Deviatiiarov R, Fort A, Gebhard C, Goldowitz D, Guhl S, Ha TJ, Harshbarger J, Hasegawa A, Hashimoto K, Herlyn M, Heutink P, Hitchens KJ, Hon CC, Huang E, Ishizu Y, Kai C, Kasukawa T, Klinken P, Lassmann T, Lecellier CH, Lee W, Lizio M, Makeev V, Mathelier A, Medvedeva YA, Mejhert N, Mungall CJ, Noma S, Ohshima M, Okada-Hatakeyama M, Persson H, Rizzu P, Roudnicky F, Sætrom P, Sato H, Severin J, Shin JW, Swoboda RK, Tarui H, Toyoda H, Vitting-Seerup K, Winteringham L, Yamaguchi Y, Yasuzawa K, Yoneda M, Yumoto N, Zabierowski S, Zhang PG, Wells CA, Summers KM, Kawaji H, Sandelin A, Rehli M; FANTOM Consortium, Hayashizaki Y, Carninci P, Forrest ARR, de Hoon MJL. An integrated expression atlas of miRNAs and their promoters in human and mouse. // Nat Biotechnol. 2017 Sep;35(9):872-878. doi: 10.1038/nbt.3947
Lu, M., Krutovsky K. V. , Nelson C.D., West J. B., Reilly N. A., Loopstra C. A. Association genetics of growth and adaptive traits in loblolly pine (Pinus taeda L.) using whole exome-discovered polymorphisms. // Tree Genetics and Genomes, 2017, 13(3): 57 IF = 2.132
http://link.springer.com/article/10.1007/s11295-017-1140-1
Johnson J.S., Gaddis K. D., Cairns D. M., Krutovsky K. V. Seed dispersal at alpine treeline: an assessment of seed movement within the alpine treeline ecotone. // Ecosphere, 2017, 8(1):e01649. IF = 2.860
10.1002/ecs2.1649
Spangenberg, V., Arakelyan, M., Galoyan, E., Matveevsky, S., Petrosyan, R., Bogdanov, Y., Danielyan F., Kolomiets, O. Reticulate Evolution of the Rock Lizards: Meiotic Chromosome Dynamics and Spermatogenesis in Diploid and Triploid Males of the Genus Darevskia. Genes, 2017, 8(6), 149. doi:10.3390/genes8060149 , Impact Factor 3.24
Naumova O.Yu., Rychkov S.Yu, Kuznetzova T.V., Odintsova V.V., Kornilov S.A., Grigorenko E.L. DNA methylation alterations in the genome of a toddler with cri-du-chat syndrome. Clinical Case Reports. 2017. http://dx.doi.org/10.1002/ccr3.1274
Naumova O.Yu., Hein S., Suderman M., Lee M., Raefski A., Barbot B., Szyf M., Luthar S.S., and Grigorenko E.L. The study of association of long-term epigenetic patterns with developmental dynamics between parenting and behavioral adjustment among high-risk children and adolescents. Child Development. 2016. 87(1): 98–110. http://dx.doi.org/10.1111/cdev.12485
Naumova O.Y., Rychkov S.Y., Odintsova V.V., Kornilov S.A., Shabalina E.V., Antsiferova D.V., Zhukova O.V., Grigorenko E.L. Aberrant DNA Methylation in Lymphocytes of Children with Neurodevelopmental Disorders. Russian Journal of Genetics. 2017. 53(11):1243–1258. https://doi.org/10.1134/S1022795417110072
Grishaeva T.M. , Kulichenko D.А. , Bogdanov Y.F. Bioinformatical analysis of Eukaryotic shugoshins revealed meiosis-specific features of vertebrate shugoshins // PeerJ. 2016. 4:e2736 Impact Factor 2.18
Abdulai, I., Krutovsky K. V. , Finkeldey R. Morphological and genetic diversity of Shea tree (Vitellaria paradoxa) in the Savannah regions of Ghana. // Genetic Resources and Crop Evolution, 2016. IF = 1.430
DOI: 10.1007/s10722-016-0434-8
http://link.springer.com/article/10.1007/s10722-016-0434-8
Koralewski, T. E., Mateos M., Krutovsky K. V. Conflicting genomic signals affecting phylogenetic inference in four species of North American pines. // AoB Plants 8: plw019, 2016. IF = 2.273 http://aobpla.oxfordjournals.org/content/8/plw019.full.pdf+html
Johnson, J.S., Gaddis K. D., Cairns D. M., Lafon C. W., Krutovsky K. V. Plant responses to global change: Next generation biogeography. // Physical Geography, 2016, 37(2): 93–119. IF = 1.010
Sadovsky, M. G., Y. A. Putintseva, V. V. Birukov, S. Novikova, K. V. Krutovsky, De novo assembly and cluster analysis of Siberian larch transcriptome and genome. // Lecture Notes in Bioinformatics. 2016, 9656: 455-464. IF = 0.800
Babushkina E. A., Vaganov E. A., Grachev A. M., Oreshkova N. V., Belokopytova L. V., Kostyakova T. V., Krutovsky K. V. The effect of individual genetic heterozygosity on general homeostasis, heterosis and resilience in Siberian larch (Larix sibirica Ledeb.) using dendrochronology and microsatellite loci genotyping. // Dendrochronologia, 2016, 38: 26-37. IF = 2.590
Zhang C., Finkeldey R., Krutovsky K. V., Genetic diversity and parentage analysis of aspen demes. // New Forests, 2016, 47(1): 143-162. IF = 1.829
Gunbin KV, Ponomarenko MP, Suslov VV, Gusev F, Fedonin GG, Rogaev EI. Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation. // Mol Neurobiol. 2017 Feb 24
Balanovsky O. Toward a consensus on SNP and STR mutation rates on the human Y-chromosome. // Hum Genet. 2017 May;136(5):575-590.
Bliznetz EA, Lalayants MR, Markova TG, Balanovsky OP, Balanovska EV, Skhalyakho RA, Pocheshkhova EA, Nikitina NV, Voronin SV, Kudryashova EK, Glotov OS, Polyakov AV. Update of the GJB2/DFNB1 mutation spectrum in Russia: a founder Ingush mutation del(GJB2-D13S175) is the most frequent among other large deletions. // J Hum Genet. 2017 Apr 13
Johnson J.S., Gaddis K.D., Cairns D.M., Konganti K., Krutovsky K.V. Landscape genomic insights into the historic migration of mountain hemlock in response to Holocene climate change // American Journal of Botany, 2017, 104 (3): 439-350.
http://www.amjbot.org/content/104/3/439.abstract
http://www.amjbot.org/content/104/3.cover-expansion
Afanasyeva MA, Putlyaeva LV, Demin DE, Kulakovskiy IV, Vorontsov IE, Fridman MV, Makeev VJ, Kuprash DV, Schwartz AM. The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region. // PLoS One. 2017 Feb 24;12(2):e0172681.
Nagle N, van Oven M, Wilcox S, van Holst Pellekaan S, Tyler-Smith C, Xue Y, Ballantyne KN, Wilcox L, Papac L, Cooke K, van Oorschot RA, McAllister P, Williams L, Kayser M, Mitchell RJ; Genographic Consortium (Balanovsly O.) Aboriginal Australian mitochondrial genome variation - an increased understanding of population antiquity and diversity. //Sci Rep. 2017; 7:43041. doi: 10.1038/srep43041. Impact Factor 5.228
Balanovsky O, Chukhryaeva M, Zaporozhchenko V, Urasin V, Zhabagin M, Hovhannisyan A, Agdzhoyan A, Dibirova K, Kuznetsova M, Koshel S, Pocheshkhova E, Alborova I, Skhalyakho R, Utevska O; Genographic Consortium., Mustafin K, Yepiskoposyan L, Tyler-Smith C, Balanovska E. Genetic differentiation between upland and lowland populations shapes the Y-chromosomal landscape of West Asia. // Hum Genet. 2017 Mar 9. doi: 10.1007/s00439-017-1770-2. [Epub ahead of print] Impact Factor 5.138
Balanovsky O, Gurianov V, Zaporozhchenko V, Balaganskaya O, Urasin V, Zhabagin M, Grugni V, Canada R, Al-Zahery N, Raveane A, Wen SQ, Yan S, Wang X, Zalloua P, Marafi A, Koshel S, Semino O, Tyler-Smith C, Balanovska E. Phylogeography of human Y-chromosome haplogroup Q3-L275 from an academic/citizen science collaboration. // BMC Evol Biol. 2017; 17(Suppl 1):18. doi: 10.1186/s12862-016-0870-2. Impact Factor 3.407
Nagle N, Ballantyne KN, van Oven M, Tyler-Smith C, Xue Y, Wilcox S, Wilcox L, Turkalov R, van Oorschot RA, van Holst Pellekaan S, Schurr TG, McAllister P, Williams L, Kayser M, Mitchell RJ; Genographic Consortium (Balanovsly O.) Mitochondrial DNA diversity of present-day Aboriginal Australians and implications for human evolution in Oceania. J Hum Genet. 2017; 62(3):343-353. doi: 10.1038/jhg.2016.147. Impact Factor 2.487
Nikitski AV, Rogounovitch TI, Bychkov A, Takahashi M, Yoshiura KI, Mitsutake N, Kawaguchi T, Matsuse M, Drozd VM, Demidchik Y, Nishihara E, Hirokawa M, Miyauchi A, Rubanovich AV, Matsuda F, Yamashita S, Saenko VA. Genotype Analyses in the Japanese and Belarusian Populations Reveal Independent Effects of rs965513 and rs1867277 but Do Not Support the Role of FOXE1 Polyalanine Tract Length in Conferring Risk for Papillary Thyroid Carcinoma. Thyroid. 2017; 27(2):224-235. doi: 10.1089/thy.2015.0541. Impact Factor 4.493
Butovskaya P. R., Lazebny O. E., Sukhodolskaya E. M., Vasiliev V. A., Dronova D. A., Fedenok J. N., Rosa A., Peletskaya E., Ryskov A.P. & Butovskaya, M. L. Polymorphisms of two loci at the oxytocin receptor gene in populations of Africa, Asia and South Europe. BMC genetics, 2016, 17(1), 1. DOI: 10.1186/s12863-015-0323-8 IF 2,489
Lu M, Krutovsky KV, Nelson CD, Koralewski TE, Byram TD, Loopstra CA. Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.). BMC Genomics. 2016 Sep 13;17(1):730 Impact Factor 3.867
Grigorenko EL, Kornilov SA, Naumova OY. Epigenetic regulation of cognition: A circumscribed review of the field. Dev Psychopathol. 2016; 28(4pt2):1285-1304. Impact Factor 2.01
Savitskaya E, Lopatina A, Medvedeva S, Kapustin M, Shmakov S, Tikhonov A, Artamonova II, Logacheva M, Severinov K. Dynamics of Escherichia coli type I-E CRISPR spacers over 42 000 years. Mol Ecol. 2016 Dec 20. doi: 10.1111/mec.13961 Impact Factor: 5.947
Gunbin KV, Ponomarenko MP, Suslov VV, Gusev F, Fedonin GG, Rogaev EI. Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation. Mol Neurobiol. 2017 Feb 24. doi: 10.1007/s12035-017-0427-4.
Moskalev A, Anisimov V, Aliper A, Artemov A, Asadullah K, Belsky D, Baranova A, de Grey A, Dixit VD, Debonneuil E, Dobrovolskaya E, Fedichev P, Fedintsev A, Fraifeld V, Franceschi C, Freer R, Fülöp T, Feige J, Gems D, Gladyshev V, Gorbunova V, Irincheeva I, Jager S, Jazwinski SM, Kaeberlein M, Kennedy B, Khaltourina D, Kovalchuk I, Kovalchuk O, Kozin S, Kulminski A, Lashmanova E, Lezhnina K, Liu GH, Longo V, Mamoshina P, Maslov A, Pedro de Magalhaes J, Mitchell J, Mitnitski A, Nikolsky Y, Ozerov I, Pasyukova E, Peregudova D, Popov V, Proshkina E, Putin E, Rogaev E, Rogina B, Schastnaya J, Seluanov A, Shaposhnikov M, Simm A, Skulachev V, Skulachev M, Solovev I, Spindler S, Stefanova N, Suh Y, Swick A, Tower J, Gudkov AV, Vijg J, Voronkov A, West M, Wagner W, Yashin A, Zemskaya N, Zhumadilov Z, Zhavoronkov A. A review of the biomedical innovations for healthy longevity. Aging (Albany NY). 2017 Jan 29;9(1):7-25. doi: 10.18632/aging.101163. 2015 . Impact Factor 3.979
Ignatieva EV, Afonnikov DA, Saik OV, Rogaev EI, Kolchanov NA. A compendium of human genes regulating feeding behavior and body weight, its functional characterization and identification of GWAS genes involved in brain-specific PPI network. // BMC Genet. 2016 ; 17(Suppl 3):158. doi: 10.1186/s12863-016-0466-2.
Zolotarenko A., E. Chekalin, A. Mesentsev, L. Kiseleva, E. Gribanova, R. Mehta, A. Baranova, T.V. Tatarinova, E.S. Piruzian, S. Bruskin. Integrated computational approach to the analysis of RNA-seq data reveals new transcriptional regulators of psoriasis. Experimental & Molecular Medicine (2016) 48 (11), e268; doi:10.1038/emm.2016.97
Pogorelko GV, Reem NT, Young ZT, Chambers L, Zabotina OA. Post-synthetic defucosylation of AGP by Aspergillus nidulans α-1,2-fucosidase expressed in Arabidopsis apoplast induces compensatory upregulation of α-1,2-fucosyltransferases. Plos One (2016).
Reem NT, Pogorelko G, Lionetti V, Chambers L, Held MA, Bellincampi D and Zabotina OA. Decreased polysaccharide feruloylation compromises plant cell wall integrity and increases susceptibility to mecrotrophic fungal pathogens. Front. Plant Sci (2016) Brouchkov A, Griva G, Fursova O, Fursova N, Ignatov S, Pogorelko GV*. Is the ancient permafrost bacteria able to keep DNA stable? Journal of Genetics April (2016).
Pogorelko GV, Kambakam S, Nolan T, Foudree A, Zabotina OA, Roderme SR. Impaired chloroplast bogenesis in immutans, an Arabidopsis variegation mutant, modifies developmental programming, cell wall composition and resistance to Pseudomonas syringae. Plos One (2016) 11(4)
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Genetic Heritage of the Balto-Slavic Speaking Populations: A Synthesis of Autosomal, Mitochondrial and Y-Chromosomal Data. Kushniarevich A, Utevska O, Chuhryaeva M, Agdzhoyan A, Dibirova K, Uktveryte I, Möls M, Mulahasanovic L, Pshenichnov A, Frolova S, Shanko A, Metspalu E, Reidla M, Tambets K, Tamm E, Koshel S, Zaporozhchenko V, Atramentova L, Kučinskas V, Davydenko O, Goncharova O, Evseeva I, Churnosov M, Pocheshchova E, Yunusbayev B, Khusnutdinova E, Marjanović D, Rudan P, Rootsi S, Yankovsky N, Endicott P, Kassian A, Dybo A; Genographic Consortium, Tyler-Smith C, Balanovska E, Metspalu M, Kivisild T, Villems R, Balanovsky O. // PLoS One. 2015 Sep 2;10(9):e0135820
Genome-wide signatures of male-mediated migration shaping the Indian gene pool. ArunKumar G, Tatarinova TV, Duty J, Rollo D, Syama A, Arun VS, Kavitha VJ, Triska P, Greenspan B, Wells RS, Pitchappan R; Genographic Consortium. // J Hum Genet. 2015 May 21. doi: 10.1038/jhg.2015.51.
The genetic legacy of the expansion of Turkic-speaking nomads across Eurasia. Yunusbayev B, Metspalu M, Metspalu E, Valeev A, Litvinov S, Valiev R, Akhmetova V, Balanovska E, Balanovsky O, Turdikulova S, Dalimova D, Nymadawa P, Bahmanimehr A, Sahakyan H, Tambets K, Fedorova S, Barashkov N, Khidiyatova I, Mihailov E, Khusainova R, Damba L, Derenko M, Malyarchuk B, Osipova L, Voevoda M, Yepiskoposyan L, Kivisild T, Khusnutdinova E, Villems R. // PLoS Genet. 2015 Apr 21;11(4):e1005068. doi: 10.1371/journal.pgen.1005068. eCollection 2015 Apr.
Deep phylogenetic analysis of haplogroup G1 provides estimates of SNP and STR mutation rates on the human Y-chromosome and reveals migrations of Iranic speakers. Balanovsky O, Zhabagin M, Agdzhoyan A, Chukhryaeva M, Zaporozhchenko V, Utevska O, Highnam G, Sabitov Z, Greenspan E, Dibirova K, Skhalyakho R, Kuznetsova M, Koshel S, Yusupov Y, Nymadawa P, Zhumadilov Z, Pocheshkhova E, Haber M, A Zalloua P, Yepiskoposyan L, Dybo A, Tyler-Smith C, Balanovska E. // PLoS One. 2015 Apr 7;10(4):e0122968.
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Diacylglyceryltrimethylhomoserine content and gene expression changes triggered by phosphate deprivation in the mycelium of the basidiomycete Flammulina velutipes. Senik SV, Maloshenok LG, Kotlova ER, Shavarda AL, Moiseenko KV, Bruskin SA, Koroleva OV, Psurtseva NV. // Phytochemistry. 2015 Sep;117:34-42.
Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal. Papatsenko D, Darr H, Kulakovskiy IV, Waghray A, Makeev VJ, MacArthur BD, Lemischka IR. // Stem Cell Reports. 2015 Aug 11;5(2):207-20.
Phenomenon of individual difference in human monocyte activation. Orekhov AN, Nikiforov NG, Elizova NV, Ivanova EA, Makeev VJ. // Exp Mol Pathol. 2015 Aug;99(1):151-4.
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Shepelev VA, Uralsky LI, Alexandrov AA, Yurov YB, Rogaev EI, Alexandrov IA. Annotation of suprachromosomal families reveals uncommon types of alpha satellite organization in pericentromeric regions of hg38 human genome assembly. // Genom Data. 2015 Sep 1;5:139-146.
Bai G, Cheung I, Shulha HP, Coelho JE, Li P, Dong X, Jakovcevski M, Wang Y, Grigorenko A, Jiang Y, Hoss A, Patel K, Zheng M, Rogaev E, Myers RH, Weng Z, Akbarian S, Chen JF. Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains. // Hum Mol Genet. 2015 Mar 1;24(5):1441-56.
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Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes. Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN. Microb Ecol. 2015 Apr 17. [Epub ahead of print]
Discovery of molecular markers to discriminate corneal endothelial cells in the human body. Yoshihara M, Ohmiya H, Hara S, Kawasaki S; FANTOM consortium (Makeev V et al.), Hayashizaki Y, Itoh M, Kawaji H, Tsujikawa M, Nishida K. PLoS One. 2015 Mar 25;10(3):e0117581.
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Effects of genetic drift in a small population of Atlantic cod (Gadus morhua kildinensis Derjugin) landlocked in a meromictic lake: genetic variation and conservation measures. Zhivotovsky, L. A., Teterina, A. A., Mukhina, N. V., Stroganov, A. N., Rubtsova, G. A., & Afanasiev, K. I. // Conservation Genetics, 1-10. DOI: 10.1007/s10592-015-0774-5
Efficiency of the inbreeding coefficient f and other estimators in detecting null alleles, as revealed by empirical data of locus oke3 across 65 populations of chum salmon Oncorhynchus keta. Zhivotovsky LA, Kordicheva SY, Shaikhaev EG, Rubtsova GA, Afanasiev KI, Shitova MV, Fuller SA, Shaikhaev GO, Gharrett AJ.// J Fish Biol. 2015 Jan;86(1):402-8
Functional analysis of the type II toxin-antitoxin systems of the MazEF and RelBE families in Bifidobacterium longum subsp. infantis ATCC 15697. Averina O, Alekseeva M, Shkoporov A, Danilenko V. // Anaerobe. 2015 Jul 23;35(Pt B):59-67.
Draft Genome Sequences of Two Pyrazinamide-Resistant Clinical Isolates, Mycobacterium tuberculosis 13-4152 and 13-2459. Maslov DA, Shur KV, Bekker OB, Zakharevich NV, Zaichikova MV, Klimina KM, Smirnova TG, Zhang Y, Chernousova LN, Danilenko VN. // Genome Announc. 2015 Jul 2;3(4). pii: e00758-15.
Draft Genome Sequences of Bifidobacterium angulatum GT102 and Bifidobacterium adolescentis 150: Focusing on the Genes Potentially Involved in the Gut-Brain Axis. Dyachkova MS, Klimina KM, Kovtun AS, Zakharevich NV, Nezametdinova VZ, Averina OV, Danilenko VN. // Genome Announc. 2015 Jul 2;3(4). pii: e00709-15.
Resistance to pyrazinamide in Russian Mycobacterium tuberculosis isolates: pncA sequencing versus Bactec MGIT 960. Maslov DA, Zaĭchikova MV, Chernousova LN, Shur KV, Bekker OB, Smirnova TG, Larionova EE, Andreevskaya SN, Zhang Y, Danilenko VN. // Tuberculosis (Edinb). 2015 Sep;95(5):608-12.
Draft Genome Sequence of Mycobacterium tuberculosis Strain E186hv of Beijing B0/W Lineage with Reduced Virulence. Shur KV, Klimina KM, Zakharevich NV, Maslov DA, Bekker OB, Zaychikova MV, Kamaev EY, Kravchenko MA, Skornyakov SN, Zhang Y, Danilenko VN. // Genome Announc. 2015 May 7;3(3). pii: e00403-15.
Draft Genome Sequences of Lactobacillus plantarum Strain 90sk and Lactobacillus brevis Strain 15f: Focusing on Neurotransmitter Genes. Yunes RA, Klimina KM, Emelyanov KV, Zakharevich NV, Poluektova EU, Danilenko VN. // Genome Announc. 2015 Apr 16;3(2). pii: e00261-15.
Expression of the toxin-antitoxin genes yefMLrh , yoeBLrh in human Lactobacillus rhamnosus isolates. Krügel H, Klimina KM, Mrotzek G, Tretyakov A, Schöfl G, Saluz HP, Brantl S, Poluektova EU, Danilenko VN. // J Basic Microbiol. 2015 Aug;55(8):982-91.
FoF1-ATP synthase of Streptomyces fradiae ATCC 19609: structural, biochemical, and functional characterization. Alekseeva MG, Mironcheva TA, Mavletova DA, Elizarov SM, Zakharevich NV, Danilenko VN. // Biochemistry (Mosc). 2015 Mar;80(3):296-309
The association of PLA2G2A single nucleotide polymorphisms with type IIa secretory phospholipase A2 level but not its activity in patients with stable coronary heart disease. Shuvalova YA, Khasanova ZB, Kaminnaya VI, Samoilova EV, Korotaeva AA, Rubanovich AV, Kaminnyi AI. // Gene. 2015 Jun 10;564(1):29-34. IF 2.082
Verification of the Chromosome Region 9q21 Association with Pelvic Organ Prolapse Using RegulomeDB Annotations. Khadzhieva MB, Kolobkov DS, Kamoeva SV, Ivanova AV, Abilev SK, Salnikova LE. // Biomed Res Int. 2015;2015:837904.
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Association of the apolipoprotein E 2 allele with concurrent occurrence of endometrial hyperplasia and endometrial carcinoma. Ivanova TI, Krikunova LI, Ryabchenko NI, Mkrtchyan LS, Khorokhorina VA, Salnikova LE. // Oxid Med Cell Longev. 2015;2015:593658.
Clinical associations of host genetic variations in the genes of cytokines in critically ill patients. Belopolskaya OB, Smelaya TV, Moroz VV, Golubev AM, Salnikova LE. // Clin Exp Immunol. 2015 Jun;180(3):531-41.
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Prepubertal Serum Concentrations of Organochlorine Pesticides and Age at Sexual Maturity in Russian Boys. Lam T, Williams PL, Lee MM, Korrick SA, Birnbaum LS, Burns JS, Sergeyev O, Revich B, Altshul LM, Patterson DG Jr, Hauser R. // Environ Health Perspect. 2015 May 22
Zhivotovsky L.A. Relationships Between Wright’s FST and FISStatistics in a Context of Wahlund Effect // J. Hered. 2015 (published online 17/04/2015) - IF 1.969
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Dasgupta M.G., Dharanishanthi V., Agarwal I., Krutovsky K.V.Development of genetic markers in Eucalyptus species by target enrichment and exome sequencing // PLoS One. 2015.10(1): e0116528. doi:10.1371/journal.pone.011652 (http://www.plosone.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pone.0116528&representation=PDF)
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Статья поставлена журналом Biotechniques на первое место в обзоре достижений в области ПЦР за 2014 год BioTechniques - PCR: 2014 Year in Review
Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, Nordenfelt S, Li H, de Filippo C, Prüfer K, Sawyer S, Posth C, Haak W, Hallgren F, Fornander E, Rohland N, Delsate D, Francken M, Guinet JM, Wahl J, Ayodo G, Babiker HA, Bailliet G, Balanovska E, Balanovsky O, Barrantes R, Bedoya G, Ben-Ami H, Bene J, Berrada F, Bravi CM, Brisighelli F, Busby GB, Cali F, Churnosov M, Cole DE, Corach D, Damba L, van Driem G, Dryomov S, Dugoujon JM, Fedorova SA, Gallego Romero I, Gubina M, Hammer M, Henn BM, Hervig T, Hodoglugil U, Jha AR, Karachanak-Yankova S, Khusainova R, Khusnutdinova E, Kittles R, Kivisild T, Klitz W, Kučinskas V, Kushniarevich A, Laredj L, Litvinov S, Loukidis T, Mahley RW, Melegh B, Metspalu E, Molina J, Mountain J, Näkkäläjärvi K, Nesheva D, Nyambo T, Osipova L, Parik J, Platonov F, Posukh O, Romano V, Rothhammer F, Rudan I, Ruizbakiev R, Sahakyan H, Sajantila A, Salas A, Starikovskaya EB, Tarekegn A, Toncheva D, Turdikulova S, Uktveryte I, Utevska O, Vasquez R, Villena M, Voevoda M, Winkler CA, Yepiskoposyan L, Zalloua P, Zemunik T, Cooper A, Capelli C, Thomas MG, Ruiz-Linares A, Tishkoff SA, Singh L, Thangaraj K, Villems R, Comas D, Sukernik R, Metspalu M, Meyer M, Eichler EE, Burger J, Slatkin M, Pääbo S, Kelso J, Reich D, Krause J. Ancient human genomes suggest three ancestral populations for present-day Europeans. // Nature. 2014 Sep 18;513(7518):409-13. doi: 10.1038/nature13673. – IF F 42.351
Holmes MV, Dale CE, Zuccolo L, Silverwood RJ, Guo Y, Ye Z, Prieto-Merino D, Dehghan A, Trompet S, Wong A, Cavadino A, Drogan D, Padmanabhan S, Li S, Yesupriya A, Leusink M, Sundstrom J, Hubacek JA, Pikhart H, Swerdlow DI, Panayiotou AG, Borinskaya SA, Finan C, Shah S, Kuchenbaecker KB, Shah T, Engmann J, Folkersen L, Eriksson P, Ricceri F, Melander O, Sacerdote C, Gamble DM, Rayaprolu S, Ross OA, McLachlan S, Vikhireva O, Sluijs I, Scott RA, Adamkova V, Flicker L, Bockxmeer FM, Power C, Marques-Vidal P, Meade T, Marmot MG, Ferro JM, Paulos-Pinheiro S, Humphries SE, Talmud PJ, Mateo Leach I, Verweij N, Linneberg A, Skaaby T, Doevendans PA, Cramer MJ, Harst Pv, Klungel OH, Dowling NF, Dominiczak AF, Kumari M, Nicolaides AN, Weikert C, Boeing H, Ebrahim S, Gaunt TR, Price JF, Lannfelt L, Peasey A, Kubinova R, Pajak A, Malyutina S, Voevoda MI, Tamosiunas A, Maitland-van der Zee AH, Norman PE, Hankey GJ, Bergmann MM, Hofman A, Franco OH, Cooper J, Palmen J, Spiering W, Jong PA, Kuh D, Hardy R, Uitterlinden AG, Ikram MA, Ford I, Hyppönen E, Almeida OP, Wareham NJ, Khaw KT, Hamsten A, Husemoen LL, Tjønneland A, Tolstrup JS, Rimm E, Beulens JW, Verschuren WM, Onland-Moret NC, Hofker MH, Wannamethee SG, Whincup PH, Morris R, Vicente AM, Watkins H, Farrall M, Jukema JW, Meschia J, Cupples LA, Sharp SJ, Fornage M, Kooperberg C, LaCroix AZ, Dai JY, Lanktree MB, Siscovick DS, Jorgenson E, Spring B, Coresh J, Li YR, Buxbaum SG, Schreiner PJ, Ellison RC, Tsai MY, Patel SR, Redline S, Johnson AD, Hoogeveen RC, Hakonarson H, Rotter JI, Boerwinkle E, Bakker PI, Kivimaki M, Asselbergs FW, Sattar N, Lawlor DA, Whittaker J, Davey Smith G, Mukamal K, Psaty BM, Wilson JG, Lange LA, Hamidovic A, Hingorani AD, Nordestgaard BG, Bobak M, Leon DA, Langenberg C, Palmer TM, Reiner AP, Keating BJ, Dudbridge F, Casas JP; InterAct Consortium. Association between alcohol and cardiovascular disease: Mendelian randomisation analysis based on individual participant data // BMJ. 2014 Jul 10;349:g4164. doi: 10.1136/bmj.g4164. Free Full Text – IF 16.378
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Elhaik E, Tatarinova T, Chebotarev D, Piras IS, Maria Calò C, De Montis A, Atzori M, Marini M, Tofanelli S, Francalacci P, Pagani L, Tyler-Smith C, Xue Y, Cucca F, Schurr TG, Gaieski JB, Melendez C, Vilar MG, Owings AC, Gómez R, Fujita R, Santos FR, Comas D, Balanovsky O, Balanovska E, Zalloua P, Soodyall H, Pitchappan R, Ganeshprasad A, Hammer M, Matisoo-Smith L, Wells RS; Genographic Consortium. // Nat Commun. 2014 Apr 29;5:3513. doi: 10.1038/ncomms4513. - IF 10.742
FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Lassmann T, Itoh M, Summers KM, Suzuki H, Daub CO, Kawai J, Heutink P, Hide W, Freeman TC, Lenhard B, Bajic VB, Taylor MS, Makeev VJ, Sandelin A, Hume DA, Carninci P, Hayashizaki Y. A promoter-level mammalian expression atlas. // Nature. 2014 Mar 27;507(7493):462-70. doi: 10.1038/nature13182. – IF 42.351 ПРЕСС-РЕЛИЗ
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Khadzhieva MB, Lutcenko NN, Volodin IV, Morozova KV, Salnikova LE. Association of Oxidative Stress Related Genes with Idiopathic Recurrent Miscarriage. // Free Radical Research. 2014;48(5):534-541. DOI:10.3109/10715762.2014.891735 – IF 3.279
The FANTOM Consortium and the RIKEN PMI and CLST (DGT), в том числе сотрудники ИОГен Иван Кулаковский, Юлия Медведева, Александр Фаворов, Артем Касьянов, Илья Воронцов и Всеволод Макеев: A promoter-level mammalian expression atlas // Nature 507, 462–470 (27 March 2014) -- IF F 42.351
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Levitsky VG, Kulakovskiy IV, Ershov NI, Oschepkov DY, Makeev VJ, Hodgman TC, Merkulova TI. Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data. BMC Genomics. 2014 Jan 29;15(1):80. -- IF 4.40
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Gogleva AA, Gelfand MS, Artamonova II. Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs. // BMC Genomics. 2014 Mar 17;15:202. IF - 4.041
Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. // Gene. 2014 ;540(1):1-10. doi: 10.1016/j.gene.2014.01.068 -- IF 2.341
Nezametdinova V.Z., Zakharevich N.V., Alekseeva M.G., Mavletova D.A., Averina O.A., Danilenko V.N. Identification and characterization of the eukaryote-like serine/threonine protein kinases in Bifidobacterium. Archives of Microbiology. 2014, V. 196, Issue 2, pp 125-136. -- IF 1.905
Thompson PM, Stein JL, Medland SE, Hibar DP, Vasquez AA, Renteria ME, Toro R, Jahanshad N, Schumann G, Franke B,Wright MJ, Martin NG, Agartz I, Alda M, Alhusaini S, Almasy L, Almeida J, Alpert K, Andreasen NC, Andreassen OA, Apostolova LG, Appel K, Armstrong NJ, Aribisala B, Bastin ME, Bauer M, Bearden CE, Bergmann O, Binder EB, Blangero J, Bockholt HJ,Bøen E, Bois C, Boomsma DI, Booth T, Bowman IJ, Bralten J, Brouwer RM, Brunner HG, Brohawn DG, Buckner RL, Buitelaar J,Bulayeva K. et al. (2014). The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging and Behavior, Online First : 1-30. -- IF 2.667
Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Genes and evolution of two-domain toxins from lynx spider venom. FEBS Lett. 2014 Jan 23. pii: S0014-5793(14)00044-1. doi: 10.1016/j.febslet.2014.01.018. -- 3.582
Slavokhotova AA, Rogozhin EA, Musolyamov AK, Andreev YA, Oparin PB, Berkut AA, Vassilevski AA, Egorov TA, Grishin EV, Odintsova TI. Novel antifungal α-hairpinin peptide from Stellaria media seeds: structure, biosynthesis, gene structure and evolution. Plant Mol Biol. 2014 Jan; 84(1-2):189-202. doi: 10.1007/s11103-013-0127-z. -- IF 3.518
Evsyukov A., Ivanov D. Seection variability for Arg48His in Alcohol Dehydrogenase ADH1B among Asian populations. Human Biology. 2013. Vol. 85. Issue 4. P. 569-578. -- IF 1.522
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2013
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| McDonald H, Borinskaya S, Kiryanov N, Gil A, Helander A, Leon DA. | Addiction. 2013 Sep; 108(9):1579-89. | 4.746 | |
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