30.10.2024
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Список публикаций Института в РИНЦ

Список публикаций Института за 2015-2022 гг. в Google Scholar

Избранные публикации 2013 - 2024 гг.

2024

Богданов Ю.Ф., Гришаева Т.М., Симановский С.А. «Мейоз. Значение, механизмы, эволюция» (монография) Товарищество научных изданий КМК, Москва, 2024. 272 с. ISBN 978-5-907747-29-6

Gracheva Alesya S., Kashatnikova Darya A.Darya A., Redkin Ivan V., Zakharchenko Vladislav E., Kuzovlev Artem N., and Salnikova Lyubov E. Genetics and Traumatic Brain Injury: Findings from an Exome-Based Study of a 50-Patient Case Series. Curr. Issues Mol. Biol. 2024, 46(9), 10351-10368;https://doi.org/10.3390/cimb46090616 IF=2.8

Khoroshkin, M., Buyan, A., Dodel, M. …. Kulakovskiy I. & Goodarzi H. Systematic identification of post-transcriptional regulatory modules. Nat Commun 15, 7872 (2024). https://doi.org/10.1038/s41467-024-52215-7 IF=14.7, Q1

Zhuk A.S., Stepchenkova E.I., Zotova I.V., Belopolskaya O.B., Pavlov Y.I., Kostroma I.I., Gritsaev S.V., Aksenova A.Y. G-Quadruplex Forming DNA Sequence Context Is Enriched around Points of Somatic Mutations in a Subset of Multiple Myeloma Patients. Int. J. Mol. Sci. 2024, 25, 10. 10.3390/ijms25105269 IF=6.2

Vorontsov IE, Eliseeva IA, Zinkevich A, Nikonov M, Abramov S, Boytsov A, Kamenets V, Kasianova A, Kolmykov S, Yevshin IS, Favorov A, Medvedeva YA, Jolma A, Kolpakov F, Makeev VJ, Kulakovskiy IV. HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors // Nucleic Acids Res. 2024 Jan 5;52(D1):D154-D163. doi: 10.1093/nar/gkad1077.

Shumega A.R., Pavlov Y.I., Chirinskaite A.V., Rubel A.A., Inge-Vechtomov S.G., Stepchenkova E.I. CRISPR/Cas9 as a Mutagenic Factor. Int. J. Mol. Sci. 2024, 25, 823. https://doi.org/10.3390/ijms25020823 IF=6.2

CAGI Consortium. CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods. Genome Biology. 2024 Feb 22;25(1):53. CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods // Genome Biology DOI: 10.1186/s13059-023-03113-6

Shibaeva A.V., Vasilieva A.P., Bokareva O.P., Samborsky S.A., Smirnova M.S., Shirshin K.K., Bogdanova E.S., Trubnikova E.V., Shevelev A.B. Synthesis of the Cobalt Polyacrylate (Hestatin) and Testing of Its Haemostatic Properties. BioNanoSci.2024. Synthesis of the Cobalt Polyacrylate (Hestatin) and Testing of Its Haemostatic Properties // BioNanoSci DOI: 10.1007/s12668-024-01333-z

Sheshukova EV, Kamarova KA, Ershova NM, Komarova TV. Nicotiana benthamiana Methanol-Inducible Gene (MIG) 21 Encodes a Nucleolus-Localized Protein That Stimulates Viral Intercellular Transport and Downregulates Nuclear Import. // Plants. 2024; 13(2):279. DOI: 10.3390/plants13020279

Fisenko A.V., Dragovich A.Yu. Origin, Genetic Diversity, and Migration Routes of Cultivated Emmer Triticum dicoccum. // Russian Journal of Genetics. 2024. V.60(4). P. 421–432. DOI: 10.1134/S1022795424040069

Knežević D., Kondić D., Dragovich A.Yu., Kudryavtsev A.M., Matković Stojšin M., Zečević V., Radosavac A., Paunović A.et al. The relationship between proteins and loaf volume. // Agro-knowledge Journal. 2024. V. 25(1). P. 45-65. DOI: 10.7251/AGREN2401045K

Nikitin P., Sidorov S., Liehr T., Klimina K., Al‐Rikabi A., Korchagin V., Kolomiets O., Arakelyan M., Spangenberg V. Variants of a major DNA satellite discriminate parental subgenomes in a hybrid parthenogenetic lizard Darevskia unisexualis (Darevsky, 1966). // Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 2024. 342:368–379 DOI: 10.1002/jez.b.23244

Bogdanov A. S., Atsaeva M. M., Arsanukaev D. D., Matveevsky S. N. Molecular Genetic and Meiotic Peculiarities of the Caucasian Pine Vole Microtus (Terricola) daghestanicus in the Eastern Part of the Greater Caucasus // Russian Journal of Genetics. 2024. V. 60, №9. P. 1282–1287. DOI: 10.1134/S1022795424700819

P.A. Kazimirov, Yu.S. Belokon’, M.M. Belokon’, A.S. Mishin, V.V. Stakheev, Yu.A. Yarovenko, A. Yu. Yarovenko, D.V. Politov. Genetic Identification of Putative Hybrids between Grey Wolf and Golden Jackal. // Russian Journal of Genetics. 2024. V. 60(6). P. 763–770. DOI: 10.1134/S1022795424700200

Abdeeva IA, Panina YS, Maloshenok LG. Synthetic Biology Approaches to Posttranslational Regulation in Plants. Biochemistry (Mosc). 2024 Jan;89(Suppl 1):S278-S289 DOI: 10.1134/S0006297924140165

Rassomakhina NV, Ryazanova AY, Likhov AR, Bruskin SA, Maloshenok LG, Zherdeva VV. Tumor Organoids: The Era of Personalized Medicine. // Biochemistry (Mosc). 2024 Jan;89(Suppl 1):S127-S147 DOI: 10.1134/S0006297924140086

Zolotarenko A, Bruskin S. IQGAP3 Is an Important Mediator of Skin Inflammatory Diseases. // Int J Mol Sci. 2024 Apr 21;25(8):4545. DOI: 10.3390/ijms25084545

A.N. Bulanov, A.V. Voylokov. Adaptive Significance and Origin of Flavonoid Biosynthesis Genes in the Grain of Cultivated Cereals. // Russian Journal of Genetics. 2024. Vol. 60(2). P. 137-151. DOI: 10.1134/S1022795424020029

Е.В. Маркова, Е.И. Леонова, Ю.В. Сопова. Сладкий белок браззеин как перспективный подсластитель // Вопросы питания. 2024. Т. 93. № 1(551). С. 61-71. DOI: 10.33029/0042-8833-2024-93-1-61-71

Pukhalskij V.A., Kudryavtsev A.M. Distribution of hybrid necrosis genes in genotypes of winter soft wheat (Triticum aestivum L.) cultivars of English selection. // Russian Journal of Genetics. 2024. V. 60. № 5. P. 698-700 DOI: 10.1134/S1022795424700121

Kolobkov D, Mishra Sharma S, Medvedev A, Lebedev M, Kosaretskiy E, Vakhitov R. Efficacy of federated learning on genomic data: a study on the UK Biobank and the 1000 Genomes Project. // Front Big Data. 2024 Feb 29;7:1266031 DOI: 10.3389/fdata.2024.1266031

Filimonov PA, Zakharov ES, Kochkarev PV, Politov DV, Davydov AV, Onokhov AA, Wei J, Somova MM, Zakharova NN, Svishcheva GR, Stolpovsky YA, Salnikova LE, Kashtanov SN. Genetic structure of native and naturalized populations of sable (Martes zibellina L.) of the Central Siberian Plateau and adjacent territories. // Biol Invasions. 2024. DOI: 10.1007/s10530-024-03299-1

Саратовских Е.А., Мачигов Э.А., Ярмоленко А.И., Штамм Е.В., Абилев С.К. Способность продуктов фотохимического разложения гербицида Раундап индуцировать окислительный стресс в бактериальных клетках // Экологическая генетика. 2024. Т. 22. №2. С. 175-189. DOI: 10.17816/ecogen567956

Shagaleeva O.Yu., Kashatnikova D.A., Kardonsky D.A., Danilova E.Yu., Ivanov V.A., Evsiev S.S., Zubkov E.A., Abramova O.V., Zorkina Y.A., Morozova A.Y., Konanov D.N., Silantiev A.S., Efimov B.A., Kolesnikova I.V., Bespyatykh J.A., Joanna Stimpson J., Zakharzhevskaya N.B. GC-MS with Headspace Extraction for Non-Invasive Diagnostics of IBD Dynamics in a Model of DSS-Induced Colitis in Rats. // Int. J. Mol. Sci. 2024. 25(6), 3295 DOI: 10.3390/ijms25063295

Shagaleeva OY, Kashatnikova DA, Kardonsky DA, Efimov BA, Ivanov VA, Smirnova SV, Evsiev SS, Zubkov EA, Abramova OV, Zorkina YA, Morozova AY, Vorobeva EA, Silantiev AS, Kolesnikova IV, Markelova MI, Olekhnovich EI, Morozov MD, Zoruk PY, Boldyreva DI, Kazakova VD, Vanyushkina AA, Chaplin AV, Grigoryeva TV, Zakharzhevskaya NB. Bacteroides vesicles promote functional alterations in the gut microbiota composition. // Microbiol Spectr. 2024 Sep 30:e0063624. DOI: 10.1128/spectrum.00636-24.

Shlapakova P.S., Dobrynina L.A., Kalashnikova L.A., Gubanova M.V., Danilova M.S., Gnedovskaya E.V., Grigorenko A.P., Gusev F.E., Manakhov A.D., Rogaev E.I. Peripheral Blood Gene Expression Profiling Reveals Molecular Pathways Associated with Cervical Artery Dissection. // Int. J. Mol. Sci. 2024. 25. 5205 DOI: 10.3390/ijms25105205

Андреева Т.В., Жилин М.Г., Малярчук А.Б., Энговатова А.В., Сошкина А.Д., Добровольская М.В., Бужилова А.П., Рогаев Е.И. Археогеномика человека из слоя верхневолжской культуры — наибольшее генетическое сходство с восточно-европейскими охотниками-собирателями и древними представителями мезолита/неолита Европы. // Вестник археологии, антропологии и этнографии. 2024. №1 (64). С. 113-125 DOI: 10.20874/2071-0437-2024-64-1-10

Сыроватко А.С., Андреева Т.В., Кунижева С.С., Сошкина А.Д., Малярчук А.Б., Адрианова И. Ю., Гусева В.П., Слепченко С.М., Рогаев Е.И. Индивид из курганного погребения XII в. на Средней Оке — опыт комплексного археолого-генетического исследования. // Вестник археологии, антропологии и этнографии. 2024. №2 (65). С. 123-136. DOI: 10.20874/2071-0437-2024-65-2-10

Рождественских Е.В., Манахов А.Д., Андреева Т.В., Кунижева С.С., Малярчук А.Б., Быданов А.С., Савинецкий А.Б., Крылович О.А., Добровольская М.В., Бужилова А.П., Макаров Н.А., Рогаев Е.И. Археогенетический анализ индивида из захоронения с территории древнего Ярославского Кремля. // Краткие Сообщения Института Археологии (КСИА). 2024. № 274. С. 348–368. DOI: 10.25681/IARAS.0130-2620.274.348-368

Burenkova O.V., Naumova O.Y., Church J.A., Juranek J., Fletcher J.M., Grigorenko E.L. Associations between telomere length, glucocorticoid receptor gene DNA methylation, volume of stress-related brain structures, and academic performance in middle-school-age children. // Comprehensive psychoneuroendocrinology. 2024. 17:100223. DOI: 10.1016/j.cpnec.2023.100223

Khafizova G.V., Naumova O.Y., Lopez A.L., Grigorenko E.L. Experimental Design and Behavioral Testing Protocol for the Evaluation of Cognitive Abilities and Social Behavior in Mice Following Early Life Stress. // Journal of Modern Foreign Psychology. 2024. 13(1):78–91. DOI: 10.17759/jmfp.2024130107

Trubitsina N.P., Matiiv A.B., Rogoza T.M., Zudilova A.A., Bezgina M.D., Zhouravleva G.A., Bondarev S.A. Role of the Gut Microbiome and Bacterial Amyloids in the Development of Synucleinopathies. Biochemistry (Mosc). 2024. 89(3):523-542. Role of the Gut Microbiome and Bacterial Amyloids in the Development of Synucleinopathies. // Biochemistry (Mosc) DOI: 10.1134/S0006297924030118

Maksiutenko E.M., Barbitoff Y.A., Danilov L.G., Matveenko A.G., Zemlyanko O.M., Efremova E.P., Moskalenko S.E., Zhouravleva G. A. Gene Expression Analysis of Yeast Strains with a Nonsense Mutation in the eRF3-Coding Gene Highlights Possible Mechanisms of Adaptation. International journal of molecular sciences. 2024. 25(12):6308. Gene Expression Analysis of Yeast Strains with a Nonsense Mutation in the eRF3-Coding Gene Highlights Possible Mechanisms of Adaptation. // The International journal of molecular sciences DOI: 10.3390/ijms25126308

Nikolaev D.M., Mironov V.N., Metelkina E.M., Shtyrov A.A., Mereshchenko A.S., Demidov N.A., Vyazmin S.Yu., Tennikova T.B., Moskalenko S.E., Bondarev S.A., Zhouravleva G.A., Vasin A.V., Panov M.S., Ryazantsev M.N. Rational Design of Far-Red Archaerhodopsin-3-Based Fluorescent Genetically Encoded Voltage Indicators: from Elucidation of the Fluorescence Mechanism in Archers to Novel Red-Shifted Variants. // ACS Physical Chemistry Au. 2024. DOI: 10.1021/acsphyschemau.3c00073

Odorskaya M.V., Mavletova D.A., Nesterov A.A., Tikhonova O.V., Soloveva N.A., Reznikova D.A., Galanova O.O., Vatlin A.A., Slynko N.M., Vasilieva A.R., Peltek S.E., Danilenko V.N. The use of omics technologies in creating LBP and postbiots based on the Limosilactobacillus fermentum U-21. // Front. Microbiol. Sec. Microbial Physiology and Metabolism. 2024.15:1416688. DOI: 10.3389/fmicb.2024.1416688

Averina O.V., Poluektova E.U., Zorkina Y.A., Kovtun A.S., Danilenko V.N. Human Gut Microbiota for Diagnosis and Treatment of Depression. // Int. J. Mol. Sci. 2024. 25. 5782. DOI: 10.3390/ijms25115782

Katkova M.A., Zabrodina G.S., Zhigulin G.Yu., Rumyantsev R.V., Kiskin M.A., Fomina I.G., Bekker O.B., Ketkov S.Yu., Eremenko I.L. Unexpected influence of metallamacrocyclic architecture of heterometallic pyrazinehydroximate Cu(II)-Bi(III) and Cu(II)-La(III) complexes on their antibacterial activity against Mycolicibacterium smegmatis. // Inorganica Chimica Acta. 2024. V. 565:121976. DOI: 10.1016/j.ica.2024.121976

Koshenskova K.A., Baravikov D.E., Kayukova L.A., Ergalieva E.M., Nelyubina Yu.V., Nikiforova M.E., Dolgushin F.M., Fedin M.V., Bekker O.B., Shender V.O., Lutsenko I.A. Evaluation of the anionic effect on the formation of biologically active {CuII-phenx; x = 1, 2, 3} fragments - Synthetic and structural variations, antimycobacterial and antiblastoma effects. // Polyhedron. 2024. V.251:116852. DOI: 10.1016/j.poly.2024.116852

Uvarova M.A., Lutsenko I.A., Shmelev M.A., Nefedov S.E., Bekker O.B., Lashkin A.I., Shender V.O., Eremenko I.L. Research of the influence of anions in complexes [CuPhen(Hpz)2 X2 ] (X = CF3 COO− , Otf− , Cl− ) on the structure and bioactivity. // New Journal of Chemistry. 2024. 48(2): 717-723. DOI: 10.1039/D3NJ04903E

Ставровская А.В., Воронков Д.Н., Марсова М.В., Ольшанский А.С., Гущина А.С., Даниленко В.Н., Иллариошкин С.Н. Эффекты фармабиотика U-21 в комбинированной нейровоспалительной модели болезни Паркинсона у крыс. // Бюллетень экспериментальной биологии и медицины. 2024. Т. 177. № 2. С. 193-199. DOI: 10.47056/0365-9615-2024-177-2-193-199

Каштанов С.Н, Захаров Е.С., Семина М.Т., Винокуров Н. В., Винокуров А.В., Онохов А.А., Филимонов П.А., Николаева Э.А., Южаков А.А., Сергеева О.К., Сомова М.М., Лайшев К.А., Столповский Ю.А. Генетическая структура доместицированных популяций северного оленя (Rangifer tarandus) среднесибирского плоскогорья и прилегающих территорий. // Генетика. 2024. Т.60. №1. С.94-100. Генетика DOI: 10.31857/S0016675824010076

Zasukhina G.D., Maksimova T.N. Prospects for the Use of Thymoquinone (a Component of Nigella sativa) in the Prevention and Therapy of Neuropathologies. // Biol Bull Rev. 2024. v. 14(4). P. 405–409. DOI: 10.1134/S2079086424600048

Акимкин В.Г., Зверев В.В., Кирпичников М.П., Свердлов Е.Д., Стародубов В.И., Янковский Н.К. Эпидемиологические, клеточные, генетические и эпигенетические аспекты биобезопасности. // Вестник Российской академии наук. 2024. Т. 94. № 3. С. 287-298. DOI: 10.31857/S0869587324030127

Metakovsky E., Pascual L., Melnik V.A., Dedova L.V., Vaccino P., Wrigley C.W. Alleles at the GLI loci are reliable genetic markers with great resolution. // Journal of Cereal Science, 2024, 119, 104003 DOI: 10.1016/j.jcs.2024.104003

Metakovsky E., Melnik V.A., Pascual L., Wrigley C.W. How Important Are Genetic Diversity and Cultivar Uniformity in Wheat? The Case of Gliadins. // Genes, 2024, 15, 927. DOI: 10.3390/genes15070927

Gins E.M., Goryunova S.V., Motyleva S.M., Khasanova S.D., Gins Y.K., Pivovarov Y.F., Kulikov I.M., Baikov A.A., Gins M.S. Modulation of low-molecular-weight antioxidants in Amaranthus tricolor leaves exposed to cold stress during the ripening stage. SABRAO // J. Breed. Genet., 2024, 56(4): 1424-1436. DOI: 10.54910/sabrao2024.56.4.9

Pozdniakova, N.V., Lipengolts, A.A., Skribitsky, V.A., Shpakova, K.E., Finogenova, Y.A., Smirnova, A.V., Shevelev, A.B., Grigorieva, E.Y. Transplanted Murine Tumours SPECT Imaging with 99mTc Delivered with an Artificial Recombinant Protein. // Int. J. Mol. Sci. 2024, 25, 10197 DOI: 10.3390/ijms251810197

Pavlova S.V., Romanenko S.A., Matveevsky S.N., Kuksin, A.N., Dvoyashov, I.A., Kovalskaya, Y.M., Proskuryakova, A.A., Serdyukova, N.A. and Petrova, T.V. Supernumerary chromosomes enhance karyotypic diversification of narrow-headed voles of the subgenus Stenocranius (Rodentia, Mammalia). // Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 2024. V. 342. P.1-19 DOI: 10.1002/jez.b.23273

Zhuk A.S., Stepchenkova E.I., Zotova I.V., Belopolskaya O.B., Pavlov Y.I., Kostroma I.I., Gritsaev S.V., Aksenova A.Y. G-Quadruplex Forming DNA Sequence Context Is Enriched around Points of Somatic Mutations in a Subset of Multiple Myeloma Patients. International // Journal of Molecular Sciences. 2024; 25(10):5269. DOI: 10.3390/ijms25105269

S. K. Abilev, E. M. Machigov, S. V. Smirnova, M. V. Marsova. Nematode Caenorhabditis elegans as an Object for Testing the Genotoxicity of Chemical Compounds // Russian Journal of Genetics, 2024, Vol. 60, No. 9, P. 1148–1152. DOI: 10.1134/S1022795424700674

Naumova O.Y., Dobrynin P.V., Khafizova G.V., Grigorenko E.L. The Association of the Oral Microbiota with Cognitive Functioning in Adolescence //Genes. 2024; 15(10):1263 DOI: 10.3390/genes15101263

Evteev A., Syutkina T., Grosheva A., Santos P., Ghirotto S., Hanihara T., Hubbe M., Menéndez L.P. Disparate and parallel craniofacial climatic adaptations in native populations of Asia, North America, and South America // Journal of Anatomy. 2024. 00, 1–26. DOI: 10.1111/joa.14115

Б.В. Андрианов, Л.А. Урошлев, О.В. Василенко, Ю.И. Мешков. Метагеномный анализ микробиоты лабораторной популяции клещей Neoseiulus californicus (Mesostigmata, Phytoseiidae) и оптимизация состава микробиоты для повышения эффективности искусственного разведения клещей. // Зоологический журнал. 2024. Т. 103. № 2. С. 3–14.

A. M. Burdennyy, S. S. Lukina, L. A. Uroshlev, E. A. Filippova, I. V. Pronina, M. V. Fridman, K. I. Zhordaniya, T. P. Kazubskaya, N. E. Kushlinskii, V. I. Loginova, E. A. Braga. Hypermethylation in Ovarian Cancer of Long Noncoding RNA Genes: HOTAIR, GAS5, LINC00472, LINC00886, TUG1. // Russian Journal of Genetics, 2024, Vol. 60, No. 5, pp. 665–675. DOI: 10.1134/S1022795424700029

Stavrovskaya AV, Voronkov DN, Marsova MV, Olshansky AS, Gushchina AS, Danilenko VN, Illarioshkin SN. Effects of the Pharmabiotic U-21 under Conditions of a Combined Neuroinflammatory Model of Parkinson's Disease in Rats. // Bull Exp Biol Med. 2024 Jun;177(2):225-230. DOI: 10.1007/s10517-024-06161-5

Al Ebrahim RN, Alekseeva MG, Bazhenov SV, Fomin VV, Mavletova DA, Nesterov AA, Poluektova EU, Danilenko VN, Manukhov IV. ClpL Chaperone as a Possible Component of the Disaggregase Activity of Limosilactobacillus fermentum U-21. // Biology (Basel). 2024.13(8):592. DOI: 10.3390/biology13080592

A.A. Vatlin, S.G. Frolova, O.B. Bekker, V.N. Danilenko. Studying the mechanism of action of new derivatives of quinoxalin_1,4_dioxide on the model organism Mycobacterium smegmatis. // RUDN Journal of Ecology and Life Safety 2024 Vol. 32 No. 1. 41–50. DOI: 10.22363/2313-2310-2024-32-1-41-50

M.A. Uvarova, M.E. Nikiforova, M.A. Shmelev, T.M. Aliev, M.T. Metlin, I.V. Taydakov, O.B. Bekker, O.A. Levitskiy, T.V. Magdesieva, G.L. Rusinov, D.V. Belyaev, D.V. Vakhrusheva, S.Yu. Krasnoborova, M.A. Kiskin, I.A. Lutsenko, I.L. Eremenko. Lanthanide furoate complexes as promising systems with double effects –From suppression of mycobacteria to potential bioimaging. // Inorganica Chimica Acta. 2024. V. 567.122066. DOI: 10.1016/j.ica.2024.122066

K.A. Koshenskova, D.E. Baravikov, L.S. Razvorotneva, F.M. Dolgushin, O.B. Bekker, A.V. Khoroshilov, I.L. Eremenko, I.A. Lutsenko. Ways of enhancement of biological effi ciency of copper(II) and zinc(II) complexes: synthetic and structural aspects, thermal properties, and antimycobacterial activity. // Russian Chemical Bulletin. 2024. Vol. 73. No. 6. P. 1818—1828. DOI: 10.1007/s11172-024-4299-2

С.В. Бекетов, Т.Е. Денискова, А.В. Доцев, Э.А. Николаева, Н.А. Зиновьева, М.И. Селионова, Ю.А. Столповский. Популяции тувинских короткожирнохвостовых овец в структуре генофонда пород овец Российской Федерации. // Генетика. 2024. Т. 60. № 1. С. 80-94. DOI: 10.31857/S0016675824010068

I.E. Vorontsov, I.A. Eliseeva, A. Zinkevich, M. Nikonov, S. Abramov, A. Boytsov,Ф ФV. Kamenets, A. Kasianova, S. Kolmykov, I.S. Yevshin, A. Favorov, Y.A. Medvedeva, A. Jolma, F. Kolpakov, V.J. Makeev, I.V. Kulakovskiy. HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors. Nucleic Acids Research, 2024 Jan 5;52(D1):D154-D163 DOI: 10.1093/nar/gkad1077

Abdeeva IA, Panina YS, Maloshenok LG. Synthetic Biology Approaches to Posttranslational Regulation in Plants. Biochemistry (Mosc). 2024 Jan;89(Suppl 1):S278-S289 DOI: 10.1134/S0006297924140165

Zolotarenko A, Bruskin S. IQGAP3 Is an Important Mediator of Skin Inflammatory Diseases. // Int J Mol Sci. 2024 Apr 21;25(8):4545. DOI: 10.3390/ijms25084545

Shumega A.R., Pavlov Y.I., Chirinskaite A.V., Rubel A.A., Inge-Vechtomov S.G., Stepchenkova E.I. CRISPR/Cas9 as a Mutagenic Factor. // Int. J. Mol. Sci. 2024. 25. 823 DOI: 10.3390/ijms25020823

Zhuk A.S., Stepchenkova E.I., Zotova I.V., Belopolskaya O.B., Pavlov Y.I., Kostroma I.I., Gritsaev S.V., Aksenova A.Y. G-Quadruplex Forming DNA Sequence Context Is Enriched around Points of Somatic Mutations in a Subset of Multiple Myeloma Patients. // Int. J. Mol. Sci. 2024. 25. 5269 DOI: 10.3390/ijms25105269

Averina O.V., Poluektova E.U., Zorkina Y.A., Kovtun A.S., Danilenko V.N. Human Gut Microbiota for Diagnosis and Treatment of Depression. // Int. J. Mol. Sci. 2024. 25. 5782. DOI: 10.3390/ijms25115782

Khoroshkin M., Buyan A., Dodel M., Navickas A., Yu J., Trejo F., Doty A., Baratam R., Zhou S., Lee S.B., Joshi T., Garcia K., Choi B., Miglani S., Subramanyam V., Modi H., Carpenter C., Markett D., Corces MR., Mardakheh F.K., Kulakovskiy I.V., Hani Goodarzi H. Systematic identification of post-transcriptional regulatory modules. // Nature Communications. 2024.15(1). P. 7872. DOI: 10.1038/s41467-024-52215-7

Metakovsky E., Melnik V.A., Pascual L., Wrigley C.W. How Important Are Genetic Diversity and Cultivar Uniformity in Wheat? The Case of Gliadins. // Genes, 2024, 15, 927. DOI: 10.3390/genes15070927

Naumova O.Y., Dobrynin P.V., Khafizova G.V., Grigorenko E.L. The Association of the Oral Microbiota with Cognitive Functioning in Adolescence //Genes. 2024; 15(10):1263 DOI: 10.3390/genes15101263

Gracheva AS, Kashatnikova DA, Redkin IV, Zakharchenko VE, Kuzovlev AN, Salnikova LE. Genetics and Traumatic Brain Injury: Findings from an Exome-Based Study of a 50-Patient Case Series. // Curr Issues Mol Biol. 2024 Sep 17;46(9):10351-10368 DOI: 10.3390/cimb46090616

2023

Kamarova K.A., Ershova N.M., Sheshukova E.V., Arifulin E.A., Ovsiannikova N.L., Antimonova A.A., Kudriashov A.A., Komarova T.V. Nicotiana benthamiana Class 1 Reversibly Glycosylated Polypeptides Suppress Tobacco Mosaic Virus Infection // International Journal of Molecular Sciences. – 2023. – Vol. 24. – № 16. – P. 12843. Q1

Komarova T., Ilina I., Taliansky M., Ershova N. Nanoplatforms for the Delivery of Nucleic Acids into Plant Cells // International Journal of Molecular Sciences. – 2023. – Vol. 24. – № 23. – P. 16665. Q1

Khadzhieva MB, Kolobkov DS, Kashatnikova DA, Gracheva AS, Redkin IV, Kuzovlev AN, Salnikova LE. // Biomolecules. 2023 Sep 12;13(9):1380. doi: 10.3390/biom13091380.

Mokrousov I., Vyazovaya A., Shitikov E., Badleeva M., Belopolskaya O., Bespiatykh D., Gerasimova A., Ioannidis P., Jiao W., Kyromova P., Masharsky A., Naizabayeva D., Papaventsis D., Pasechnik O.,Perdigao J., Rastogi N., Shen A., Sinkov V., Skiba Y., Solovieva N., Tafaj S.,Valcheva V., Kostyukova I., Zhdanova S., Zhuravlev V., Ogarkov O. Insight into pathogenomics and phylogeography of hypervirulent and highly-lethal Mycobacterium tuberculosis strain cluster. // BMC Infect Dis. 2023. Т. 23. С. 426. doi.org/10.1186/s12879-023-08413-7

Khadzhieva M.B., Gracheva A.S., Belopolskaya O.B., Kolobkov D.S., Kashatnikova D.A., Redkin I.V., Kuzovlev A.N., Grechko A.V., Salnikova L.E. COVID-19 severity: does the genetic landscape of rare variants matter? Frontiers in Genetics. 2023. Т. 14. С. 1152768. doi.org/10.3389/fgene.2023.1152768

Kurmyshkina O.V., Pavel V. Dobrynin, Pavel I. Kovchur, Tatyana O. Volkova. Brief Research Report: Sequencing-based transcriptome analysis reveals diversification of immune response-and angiogenesis-related expression patterns of early-stage cervical carcinoma as compared with high-grade CIN // Front. Immunol. Volume 14 – 2023. doi: 10.3389/fimmu.2023.1215607 IF=8,786. Q1

Evgenia Kupriyanova, Andrey Manakhov, Tatiana Ezhova. PARG1 and EXA1 genes as possible components of the facultative epigenetic control of plant development // Physiologia Plantarum. 2023. https://doi.org/10.1111/ppl.13959 IF=5,081. Q1

Natalia Ershova, Kamila Kamarova, Ekaterina Sheshukova, Alexandra Antimonova and Tatiana Komarova. A novel cellular factor of Nicotiana benthamiana susceptibility to tobamovirus infection // Front. Plant Sci., 18 July 2023. Volume 14 - 2023 | https://doi.org/10.3389/fpls.2023.1224958 IF=6.627. Q1

Natalya V Ponomareva, Tatiana Andreeva, Maria Protasova, Ekaterina P Kolesnikova, Daria Malina, Elena V. Kanavets, Rodion Konovalov, Marina V. Krotenkova, Vitaly Fokin, Sergey Illarioshkin, Evgeny I Rogaev. Genetic association of apolipoprotein E genotype with EEG alpha rhythm and resting-state functional MRI connectivity in non-demented adults during aging // Alzheimer's & Dementia. 2023. Volume19, IssueS3. https://doi.org/10.1002/alz.066061. IF=16.665. Q1

Evgenia Kupriyanova, Andrey Manakhov, Tatiana Ezhova. PARG1 and EXA1 genes as possible components of the facultative epigenetic control of plant development // Physiologia Plantarum. 2023. Volume175, Issue4. https://doi.org/10.1111/ppl.13959. IF=5.081. Q1

James T. Morton, Dong-Min Jin, Robert H. Mills, Yan Shao, Gibraan Rahman, Daniel McDonald, Qiyun Zhu, Metin Balaban, Yueyu Jiang, Kalen Cantrell, Antonio Gonzalez, Julie Carmel, Linoy Mia Frankiensztajn, Sandra Martin-Brevet, Kirsten Berding, Brittany D. Needham, María Fernanda Zurita, Maude David, Olga V. Averina, Alexey S. Kovtun, Antonio Noto, Michele Mussap, Mingbang Wang, Daniel N. Frank, Ellen Li, Wenhao Zhou, Vassilios Fanos, Valery N. Danilenko, Dennis P. Wall, Paúl Cárdenas, Manuel E. Baldeón, Sébastien Jacquemont, Omry Koren, Evan Elliott, Ramnik J. Xavier, Sarkis K. Mazmanian, Rob Knight, Jack A. Gilbert, Sharon M. Donovan, Trevor D. Lawley, Bob Carpenter, Richard Bonneau & Gaspar Taroncher-Oldenburg // Nature Neuroscience (2023) DOI: https://doi.org/10.1038/s41593-023-01361-0. IF=28,78. Q1

Grishina Y.V., Vatlin A.A., Mavletova D.A., Odorskaya M.V., Senkovenko A.M., Ilyasov R.A., Danilenko V.N. Metabolites Potentially Determine the High Antioxidant Properties of Limosilactobacillus fermentum U-21. BioTech. 2023. Volume 12. Issue 2. 10.3390/biotech12020039

Abilev S.K., Igonina E.v., Sviridova D.A., Smirnova S.V. Bacterial Lux Biosensors in Genotoxicological Studies. Biosensors 2023, 13(5), 511; https://doi.org/10.3390/bios13050511

Alekseeva MG, Dyakov IN, Bushkova KK, Mavletova DA, Yunes RA, Chernyshova IN, Masalitin IA, Koshenko TA, Nezametdinova VZ, Danilenko VN. Study of the binding of ΔFN3.1 fragments of the Bifidobacterium longum GT15 with TNFα and prevalence of domain-containing proteins in groups of bacteria of the human gut microbiota. Microbiome Research Reports. 2023; 2(2):10. http://dx.doi.org/10.20517/mrr.2023.06

Ponomareva N.V., Andreeva T.V., Protasova M.S., Kunizheva S.S., Kuznetsova I.L., Kolesnikova E.P., Malina D.D., Mitrofanov A.A., Fokin V.F., Illarioshkin S.N., Rogaev E.I. Neuronal Hyperactivation in EEG Data during Cognitive Tasks Is Related to the Apolipoprotein J/Clusterin Genotype in Nondemented Adults. International Journal of Molecular Sciences. 2023, 24(7), 6790; https://doi.org/10.3390/ijms24076790 (IF = 6.208/ 6.628; Q1/Q1)

Šnjegota D., Niedziałkowska M., Vik Stronen A., Borowik T., Plis K., Arakelyan M., Ćirović D., Danila G., Djan M., Ghazaryan A., Gurielidze Z., Hayrapetyan T., Hegyeli Z., Karamanlidis A., Kopaliani N., Kusak J., Politov D., Talala M., Tsingarska E., Jędrzejewska B. The role of the Caucasus, Carpathian, and Dinaric–Balkan regions in preserving wolf genetic diversity. Mamm Biol (2023). https://doi.org/10.1007/s42991-023-00357-4

Tikhomirova, T. S., K. V. Krutovsky, K. A. Shestibratov 2023 Molecular traits for adaptation to drought and salt stress in birch, oak and poplar species. Forests 14(1), 7; https://doi.org/10.3390/f14010007 (IF = 3.282/3.292; Q1/Q1)

Novikova S. V., V. V. Sharov, N. V. Oreshkova, E. P. Simonov, K. V. Krutovsky, 2023. Genetic adaptation of Siberian larch (Larix sibirica Ledeb.) to high altitudes. International Journal of Molecular Sciences, 24(5), 4530; https://doi.org/10.3390/ijms24054530 (IF = 6.208/ 6.628; Q1/Q1)

Nieves-Orduña, H. E., K. V. Krutovsky, O. Gailing. 2022 Geographic distribution, conservation, and genomic resources of cacao Theobroma cacao L. Crop Science First published online: 22 March 2023 https://doi.org/10.1002/csc2.20959 (IF = 2.763/2.856; Q2_WoS/Q1_Scopus)

Solodneva E., Svishcheva G., Smolnikov R., Bazhenov S., Konorov E., Mukhina V., Stolpovsky Y. Genetic Structure Analysis of 155 Transboundary and Local Populations of Cattle (Bos taurus, Bos indicus and Bos grunniens) Based on STR Markers. International Journal of Molecular Sciences. 2023; 24(5):5061. https://doi.org/10.3390/ijms24055061 (Q1, IF = 6.2)

Subkhankulova T., Camargo Sosa K., Uroshlev L.A., Nikaido M., Shriever N., Kasianov A.S., Yang X., Rodrigues F.S.L.M., Carney T.J., Bavister G., Schwetlick H., Dawes J.H.P., Rocco A., Makeev V.J., Kelsh R.N. Zebrafish pigment cells develop directly from persistent highly multipotent progenitors. Nature Communications. 2023. 14: 1258, DOI: 10.1038/s41467-023-36876-4 (Q1, IF = 17.7)

Levchenko A., Gusev F., Rogaev E. The evolutionary origin of psychosis. Front Psychiatry. 2023 Jan 20;14:1115929. doi: 10.3389/fpsyt.2023.1115929.

Protasova M.S., Andreeva T.V., Klyushnikov S.A., Illarioshkin S.N., Rogaev E.I. Genetic Variant in GRM1 Underlies Congenital Cerebellar Ataxia with No Obvious Intellectual Disability. Int J Mol Sci. 2023 Jan 12;24(2):1551. doi: 10.3390/ijms24021551

Senik S.V., Manzhieva B.S., Maloshenok L.G., Serebryakov E.B., Bruskin S.A., Kotlova E.R. Heterogeneous Distribution of Phospholipid Molecular Species in the Surface Culture of Flammulina velutipes: New Facts about Lipids Containing α-Linolenic Fatty Acid. J Fungi (Basel). 2023 Jan 12;9(1):102. doi: 10.3390/jof9010102.

Kolomiets O., Bakloushinskaya I., Pankin V., Tambovtseva V., Matveevsky S. Irregularities in Meiotic Prophase I as Prerequisites for Reproductive Isolation in Experimental Hybrids Carrying Robertsonian Translocations Diversity 2023, 15(3), 364; https://doi.org/10.3390/d15030364

Deviatiiarov, R.M., Gams, A., Kulakovskiy, I.V. et al. An atlas of transcribed human cardiac promoters and enhancers reveals an important role of regulatory elements in heart failure. Nat Cardiovasc Res 2, 58–75 (2023). https://doi.org/10.1038/s44161-022-00182-x

Khadzhieva MB, Gracheva AS, Belopolskaya OB, Chursinova YV, Redkin IV, Pisarev MV, Kuzovlev AN. Serial Changes in Blood-Cell-Count-Derived and CRP-Derived Inflammatory Indices of COVID-19 Patients. Diagnostics (Basel). 2023 Feb 16;13(4):746. doi: 10.3390/diagnostics13040746

Maloshenok L, Abushinova G, Kazachkina N, Bogdanov A Jr, Zherdeva V. Tet-Regulated Expression and Optical Clearing for In Vivo Visualization of Genetically Encoded Chimeric dCas9/Fluorescent Protein Probes. Materials (Basel). 2023 Jan 19;16(3):940. doi: 10.3390/ma16030940.

Matveevsky S, Tropin N, Kucheryavyy A, Kolomiets O. The First Analysis of Synaptonemal Complexes in Jawless Vertebrates: Chromosome Synapsis and Transcription Reactivation at Meiotic Prophase I in the Lamprey Lampetra fluviatilis (Petromyzontiformes, Cyclostomata). Life (Basel). 2023 Feb 11;13(2):501. doi: 10.3390/life13020501.

Belashova TA, Valina AA, Sysoev EI, Velizhanina ME, Zelinsky AA, Galkin AP. Search and Identification of Amyloid Proteins. Methods Protoc. 2023 Feb 4;6(1):16. doi: 10.3390/mps6010016.

Lemesheva V, Islamova R, Stepchenkova E, Shenfeld A, Birkemeyer C, Tarakhovskaya E. Antibacterial, Antifungal and Algicidal Activity of Phlorotannins, as Principal Biologically Active Components of Ten Species of Brown Algae. Plants (Basel). 2023 Feb 12;12(4):821. doi: 10.3390/plants12040821.

Lauffer P, Zwaveling-Soonawala N, Li S, Bacalini MG, Naumova OY, Wiemels J, Boelen A, Henneman P, de Smith AJ, van Trotsenburg ASP. Meta-Analysis of DNA Methylation Datasets Shows Aberrant DNA Methylation of Thyroid Development or Function Genes in Down Syndrome. Thyroid. 2023 Jan;33(1):53-62. doi: 10.1089/thy.2022.0320.

Veselkina ER, Trostnikov MV, Roshina NV, Pasyukova EG.The Effect of the Tau Protein on D. melanogaster Lifespan Depends on GSK3 Expression and Sex. Int J Mol Sci. 2023 Jan 21;24(3):2166. doi: 10.3390/ijms24032166.

Marakulina D, Vorontsov IE, Kulakovskiy IV, Lennartsson A, Drabløs F, Medvedeva YA. EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes. Nucleic Acids Res. 2023 Jan 6;51(D1):D564-D570. doi: 10.1093/nar/gkac989.

2022

Spangenberg, V., Redekop, I., Simanovsky, S. A., Kolomiets, O. (2022). Cytogenetic Analysis of the Bimodal Karyotype of the Common European Adder, Vipera berus (Viperidae). Animals, 12(24), 3563. (Q1, IF=3.2)

https://www.mdpi.com/2076-2615/12/24/3563

Rovatsos, M., Galoyan, E., Spangenberg, V., Vassilieva, A., Kratochvíl, L. (2022). XX/XY sex chromosomes in a blind lizard (Dibamidae): Towards understanding the evolution of sex determination in squamates. Journal of Evolutionary Biology, 35(12), 1791-1796. (Q1, IF=2.5)

https://onlinelibrary.wiley.com/doi/abs/10.1111/jeb.14123

Spangenberg, V. (2022). FISH—and the Characterization of Synaptonemal Complex. In Cytogenetics and Molecular Cytogenetics (pp. 297-305). CRC Press.

https://www.taylorfrancis.com/chapters/edit/10.1201/9781003223658-25/fish%E2%80%94and-characterization-synaptonemal-complex-victor-spangenberg

Kozlov A. P. The Theory of Carcino-Evo-Devo and Its Non-Trivial Predictions // Genes. 2022. 13. 2347. https://doi.org/10.3390/genes13122347

Kuchma O., J. Rebola-Lichtenberg, D. Janz, K. V. Krutovsky, C. Ammer, A. Polle, O. Gailing 2022 Response of poplar leaf transcriptome to changed management and environmental conditions in pure and mixed with black locust stands. Forests 13(2), 147; https://doi.org/10.3390/f13020147 Published: 19 January 2022 (IF = 2.634/2.804; Q1)

Shevchenko G. V., K. V. Krutovsky 2022 Mechanical stress effects on transcriptional regulation of genes encoding microtubule- and actin-associated proteins. Physiology and Molecular Biology of Plants https://doi.org/10.1007/s12298-021-01123-x Published: 21 January 2022 (IF = 2.391/2.836; Q1/2)

Biriukov V.V., Pavlov I.N., Litovka Yu.A., Oreshkova N.V., Sharov V.V., Simonov E.P., Kuzmin D.A., Krutovsky K.V. 2022 De novo transcriptome assembly and annotation of a new plant pathogenic Corinectria sp. strain in Siberia. Mikologiya i Fitopatologiya (Micology and Phytopathology) 56(2): 114–126 https://doi.org/10.31857/S0026364822020052 (IF = 0.530; Q4)

Bondar, E. I., M. Troukhan, K. V. Krutovsky, T. V. Tatarinova. 2022. Genome-wide prediction of transcription start sites in conifers. International Journal of Molecular Sciences 23(3), 1735; https://doi.org/10.3390/ijms23031735 (IF = 6.208/ 6.628; Q1/Q1)

Kirichenko, A. D., A. A. Poroshina, D. Yu. Sherbakov, M. G. Sadovsky, K. V. Krutovsky 2022. Comparative analysis of alignment-free genome clustering and whole genome alignment-based phylogenomic relationship of coronaviruses. PLoS One 17(3): e0264640. https://doi.org/10.1371/journal.pone.0264640 (IF =3.240/3.788; S1/Q2)

Popov, V. N., M. Yu. Syromyatnikov, ‪C. Franceschi, A. A. Moskalev, K. V. Krutovsky 2022. Genetic mechanisms of aging in plants: What can we learn from them? Ageing Research Reviews 77: 101601 https://doi.org/10.1016/j.arr.2022.101601 Published online first: 9 March 2022 (IF = 10.616, Q1)

Batalova, A. Y., Y. A. Putintseva, M. G. Sadovsky, K. V. Krutovsky 2022 Comparative genomics of seasonal senescence in forest trees. International Journal of Molecular Sciences 23(7), 3761. https://doi.org/10.3390/ijms23073761 (IF = 6.208/6.628; Q1/Q1)

Perfileva A. I., I. A. Graskova, B. G. Sukhov, K. V. Krutovsky 2022 Effect of selenium nanocomposites based on natural polymer matrices on the biomass and storage of potato tubers in a field experiment. Agronomy 12(6), 1281; https://doi.org/10.3390/agronomy12061281 (IF =3.417/3.640; Q1/Q1)

Schulte L., S. Meucci, K. Stoof-Leichsenring, T. Heitkam, N. Schmidt, B. von Hippel, A. A. Andreev, B. Diekmann, B. K. Biskaborn, B. Wagner, M. Melles, L. A. Pestryakova, I. G. Alsos, C. Clarke, K. V. Krutovsky, U. Herzschuh. 2022. Larix species range dynamics in Siberia since the Last Glacial captured from sedimentary ancient DNA. Communications Biology 5, 570. https://doi.org/10.1038/s42003-022-03455-0 (IF = 6.268/6.268; Q1/Q1)

Belokopytova L. V., Zhirnova D. F., Krutovsky K. V., N. B. Mapitov, E. A. Vaganov, E. A. Babushkina 2022 Species- and age-specific growth reactions to extreme droughts of the keystone tree species across forest-steppe and sub-taiga habitats of South Siberia. Forests 13(7), 1027. Published: 29 June 2022; https://doi.org/10.3390/f13071027 (IF = 3.282/3.292; Q1/Q1)

Bondar, E. I., S.I. Feranchuk, K. A. Miroshnikova, V. V. Sharov, D. A. Kuzmin, N. V. Oreshkova, K. V. Krutovsky 2022 Annotation of Siberian larch (Larix sibirica Ledeb.) nuclear genome – one of the most cold resistant tree species in the only seasonal senescence Genus in Pinaceae. Plants 11(15): 2062. https://doi.org/10.3390/plants11152062 (IF = 4.658/4.827; Q1/Q1)

Krutovsky K. V. 2022 Dendrogenomics is a new interdisciplinary field of research of the adaptive genetic potential of forest tree populations integrating dendrochronology, dendroecology, dendroclimatology and genomics. Russian Journal of Genetics 58(11): 1273–1286. https://doi.org/10.1134/S1022795422110059 (IF = 0.691/0.720; Q4/Q4) (Крутовский К. В. Дендрогеномика – новая междисциплинарная область исследований адаптивного генетического потенциала лесных древесных популяций, интегрирующая дендрохронологию, дендроэкологию, дендроклиматологию и геномику. Генетика 58(11): 1225–1286. https://doi.org/10.31857/S0016675822110054)

Kersten B., Rellstab C., Schroeder H., Brodbeck S., Fladung M., Krutovsky K.V., Gugerli F. 2022 The mitochondrial genome sequence of Abies alba Mill. reveals a high structural and combinatorial diversity. BMC Genomics 23: 776. Published: 28 November 2022 https://doi.org/10.1186/s12864-022-08993-9 (IF = 4.558 / 4.930; Q2/Q1)

Zhirnova D.F., Belokopytova L.V., Krutovsky K.V., Kholdaenko Y.A., Babushkina E.A., Vaganov E.A. 2022 Spatial-coherent dynamics and climatic signal in radial growth of Siberian stone pine (Pinus sibirica Du Tour) in subalpine stands along the Western Sayan Mountains. Forests 13(12), 1994. https://doi.org/10.3390/f13121994. Published: 25 November 2022 (IF = 2.634/2.804; Q1)

Nonhomologous Chromosome Interactions in Prophase I: Dynamics of Bizarre Meiotic Contacts in the Alay Mole Vole Ellobius alaicus (Mammalia, Rodentia)

Sergey Matveevsky, Irina Bakloushinskaya, Valentina Tambovtseva, Maret Atsaeva, Tatiana Grishaeva, Aleksey Bogdanov and Oxana Kolomiets. Nonhomologous Chromosome Interactions in Prophase I: Dynamics of Bizarre Meiotic Contacts in the Alay Mole Vole Ellobius alaicus (Mammalia, Rodentia) // Genes 2022, 13(12), 2196; https://doi.org/10.3390/genes13122196

Prognostic Analysis of Human Pluripotent Stem Cells Based on Their Morphological Portrait and Expression of Pluripotent Markers

Olga A. Krasnova, Vitaly V. Gursky, Alina S. Chabina, Karina A. Kulakova, Larisa L. Alekseenko, Alexandra V. Panova, Sergey L. Kiselev and Irina E. Neganova. Prognostic Analysis of Human Pluripotent Stem Cells Based on Their Morphological Portrait and Expression of Pluripotent Markers // Int. J. Mol. Sci. 2022, 23(21), 12902; https://doi.org/10.3390/ijms232112902

Genes and Diseases: Insights from Transcriptomics Studies

Kolobkov DS, Sviridova DA, Abilev SK, Kuzovlev AN, Salnikova LE. Genes and Diseases: Insights from Transcriptomics Studies. Genes (Basel). 2022 Jun 28;13(7):1168. doi: 10.3390/genes13071168

Pneumonia and Related Conditions in Critically Ill Patients—Insights from Basic and Experimental Studies

Kashatnikova DA, Khadzhieva MB, Kolobkov DS, Belopolskaya OB, Smelaya TV, Gracheva AS, Kalinina EV, Larin SS, Kuzovlev AN, Salnikova LE. Pneumonia and Related Conditions in Critically Ill Patients—Insights from Basic and Experimental Studies. International Journal of Molecular Sciences. 2022; 23(17):9896. https://doi.org/10.3390/ijms23179896

A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand

Alina G. Mikhailova, Alina A. Mikhailova, Kristina Ushakova, Evgeny O. Tretiakov, Dmitrii Iliushchenko, Victor Shamansky, Valeria Lobanova, Ivan Kozenkov, Bogdan Efimenko, Andrey A. Yurchenko, Elena Kozenkova, Evgeny M. Zdobnov, Vsevolod Makeev, Valerian Yurov, Masashi Tanaka, Irina Gostimskaya, Zoe Fleischmann, Sofia Annis, Melissa Franco, Kevin Wasko, Stepan Denisov, Wolfram S. Kunz, Dmitry Knorre, Ilya Mazunin, Sergey Nikolaev, Jacques Fellay, Alexandre Reymond, Konstantin Khrapko, Konstantin Gunbin, and Konstantin Popadin. Nucleic Acids Research, 2022, Vol. 50, No. 18 Published online 21 September 2022 https://doi.org/10.1093/nar/gkac779

Genetic association of apolipoprotein E genotype with EEG alpha rhythm slowing and functional brain network alterations during normal aging.

Ponomareva NV, Andreeva TV, Protasova M, Konovalov RN, Krotenkova MV, Kolesnikova EP, Malina DD, Kanavets EV, Mitrofanov AA, Fokin VF, Illarioshkin SN, Rogaev EI. Front Neurosci. 2022 Aug 1;16:931173. doi: 10.3389/fnins.2022.931173. eCollection 2022.

Shadow coat colour in American mink associated with a missense mutation in the KIT gene.

Manakhov AD, Mintseva MY, Andreeva TV, Trapezov OV, Rogaev EI. Anim Genet. 2022 Aug;53(4):522-525. doi: 10.1111/age.13202.

Genomic analysis of a novel Neanderthal from Mezmaiskaya Cave provides insights into the genetic relationships of Middle Palaeolithic populations.

Andreeva TV, Manakhov AD, Gusev FE, Patrikeev AD, Golovanova LV, Doronichev VB, Shirobokov IG, Rogaev EI. Sci Rep. 2022 Jul 29;12(1):13016. doi: 10.1038/s41598-022-16164-9.

Identification of mutant gene for Black crystal coat and non-allelic gene interactions in Neogale vison.

Manakhov AD, Mintseva MY, Uralsky LI, Andreeva TV, Trapezov OV, Rogaev EI. Sci Rep. 2022 Jun 21;12(1):10483. doi: 10.1038/s41598-022-14079-z.

Novel genes bearing mutations in rare cases of early-onset ataxia with cerebellar hypoplasia.

Protasova MS, Gusev FE, Andreeva TV, Klyushnikov SA, Illarioshkin SN, Rogaev EI. Eur J Hum Genet. 2022 Jun;30(6):703-711. doi: 10.1038/s41431-022-01088-9.

The complete sequence of a human genome.

Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, Aganezov S, Hoyt SJ, Diekhans M, Logsdon GA, Alonge M, Antonarakis SE, Borchers M, Bouffard GG, Brooks SY, Caldas GV, Chen NC, Cheng H, Chin CS, Chow W, de Lima LG, Dishuck PC, Durbin R, Dvorkina T, Fiddes IT, Formenti G, Fulton RS, Fungtammasan A, Garrison E, Grady PGS, Graves-Lindsay TA, Hall IM, Hansen NF, Hartley GA, Haukness M, Howe K, Hunkapiller MW, Jain C, Jain M, Jarvis ED, Kerpedjiev P, Kirsche M, Kolmogorov M, Korlach J, Kremitzki M, Li H, Maduro VV, Marschall T, McCartney AM, McDaniel J, Miller DE, Mullikin JC, Myers EW, Olson ND, Paten B, Peluso P, Pevzner PA, Porubsky D, Potapova T, Rogaev EI, Rosenfeld JA, Salzberg SL, Schneider VA, Sedlazeck FJ, Shafin K, Shew CJ, Shumate A, Sims Y, Smit AFA, Soto DC, Sović I, Storer JM, Streets A, Sullivan BA, Thibaud-Nissen F, Torrance J, Wagner J, Walenz BP, Wenger A, Wood JMD, Xiao C, Yan SM, Young AC, Zarate S, Surti U, McCoy RC, Dennis MY, Alexandrov IA, Gerton JL, O'Neill RJ, Timp W, Zook JM, Schatz MC, Eichler EE, Miga KH, Phillippy AM. Science. 2022 Apr;376(6588):44-53. doi: 10.1126/science.abj6987.

Complete genomic and epigenetic maps of human centromeres.

Altemose N, Logsdon GA, Bzikadze AV, Sidhwani P, Langley SA, Caldas GV, Hoyt SJ, Uralsky L, Ryabov FD, Shew CJ, Sauria MEG, Borchers M, Gershman A, Mikheenko A, Shepelev VA, Dvorkina T, Kunyavskaya O, Vollger MR, Rhie A, McCartney AM, Asri M, Lorig-Roach R, Shafin K, Lucas JK, Aganezov S, Olson D, de Lima LG, Potapova T, Hartley GA, Haukness M, Kerpedjiev P, Gusev F, Tigyi K, Brooks S, Young A, Nurk S, Koren S, Salama SR, Paten B, Rogaev EI, Streets A, Karpen GH, Dernburg AF, Sullivan BA, Straight AF, Wheeler TJ, Gerton JL, Eichler EE, Phillippy AM, Timp W, Dennis MY, O'Neill RJ, Zook JM, Schatz MC, Pevzner PA, Diekhans M, Langley CH, Alexandrov IA, Miga KH. Science. 2022 Apr;376(6588):eabl4178. doi: 10.1126/science.abl4178.

Genomics of Ancient Pathogens: First Advances and Prospects.

Malyarchuk AB, Andreeva TV, Kuznetsova IL, Kunizheva SS, Protasova MS, Uralsky LI, Tyazhelova TV, Gusev FE, Manakhov AD, Rogaev EI. Biochemistry (Mosc). 2022 Mar;87(3):242-258. doi: 10.1134/S0006297922030051

Studying of Molecular Regulation of Developmental Processes of Lower Metazoans Exemplified by Cnidaria Using High-Throughput Sequencing.

Erofeeva TV, Grigorenko AP, Gusev FE, Kosevich IA, Rogaev EI. Biochemistry (Mosc). 2022 Mar;87(3):269-293. doi: 10.1134/S0006297922030075.

Neurodevelopmental Syndrome with Intellectual Disability, Speech Impairment, and Quadrupedia Is Associated with Glutamate Receptor Delta 2 Gene Defect.

Grigorenko AP, Protasova MS, Lisenkova AA, Reshetov DA, Andreeva TV, Garcias GL, Martino Roth MDG, Papassotiropoulos A, Rogaev EI. Cells. 2022 Jan 25;11(3):400. doi: 10.3390/cells11030400.

The Interactive Effect of Genetic and Epigenetic Variations in FKBP5 and ApoE Genes on Anxiety and Brain EEG Parameters.

Kuznetsova IL, Ponomareva NV, Alemastseva EA, Manakhov AD, Andreeva TV, Gusev FE, Rogaev EI. Genes (Basel). 2022 Jan 18;13(2):164. doi: 10.3390/genes13020164.

Aberrant Splicing of INS Impairs Beta-Cell Differentiation and Proliferation by ER Stress in the Isogenic iPSC Model of Neonatal Diabetes.

Panova AV, Klementieva NV, Sycheva AV, Korobko EV, Sosnovtseva AO, Krasnova TS, Karpova MR, Rubtsov PM, Tikhonovich YV, Tiulpakov AN, Kiselev SL. Int J Mol Sci. 2022 Aug 8;23(15):8824. doi: 10.3390/ijms23158824.

Equilibrium among Inflammatory Factors Determines Human MSC-Mediated Immunosuppressive Effect.

Suzdaltseva Y, Goryunov K, Silina E, Manturova N, Stupin V, Kiselev SL. Cells. 2022 Apr 3;11(7):1210. doi: 10.3390/cells11071210

A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand.

Mikhailova AG, Mikhailova AA, Ushakova K, Tretiakov EO, Iliushchenko D, Shamansky V, Lobanova V, Kozenkov I, Efimenko B, Yurchenko AA, Kozenkova E, Zdobnov EM, Makeev V, Yurov V, Tanaka M, Gostimskaya I, Fleischmann Z, Annis S, Franco M, Wasko K, Denisov S, Kunz WS, Knorre D, Mazunin I, Nikolaev S, Fellay J, Reymond A, Khrapko K, Gunbin K, Popadin K. Nucleic Acids Res. 2022 Sep 21:gkac779. doi: 10.1093/nar/gkac779. Online ahead of print.

ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs.

Boytsov A, Abramov S, Aiusheeva AZ, Kasianova AM, Baulin E, Kuznetsov IA, Aulchenko YS, Kolmykov S, Yevshin I, Kolpakov F, Vorontsov IE, Makeev VJ, Kulakovskiy IV. Nucleic Acids Res. 2022 Apr 21;50(W1):W51-6. doi: 10.1093/nar/gkac262.

Positional weight matrices have sufficient prediction power for analysis of noncoding variants.

Boytsov A, Abramov S, Makeev VJ, Kulakovskiy IV. F1000Res. 2022 Jan 12;11:33. doi: 10.12688/f1000research.75471.3. eCollection 2022.

Determining the Area of Ancestral Origin for Individuals From North Eurasia Based on 5,229 SNP Markers.

Gorin I, Balanovsky O, Kozlov O, Koshel S, Kostryukova E, Zhabagin M, Agdzhoyan A, Pylev V, Balanovska E. Front Genet. 2022 May 16;13:902309. doi: 10.3389/fgene.2022.902309. eCollection 2022. PMID: 35651934 Free PMC article.

Analysis of the Frequency of 10 Polymorphic Markers of CDKN2A and RB1 Genes in Russian Populations.

Olkova MV, Balanovsky OP. Bull Exp Biol Med. 2022 Jan;172(3):352-358. doi: 10.1007/s10517-022-05391-9.

Geographic Mosaic of Extensive Genetic Variations in Subterranean Mole Voles Ellobius alaicus as a Consequence of Habitat Fragmentation and Hybridization.

Tambovtseva V, Bakloushinskaya I, Matveevsky S, Bogdanov A. Life (Basel). 2022 May 13;12(5):728. doi: 10.3390/life12050728.

Alterations of the Composition and Neurometabolic Profile of Human Gut Microbiota in Major Depressive Disorder.

Kovtun AS, Averina OV, Angelova IY, Yunes RA, Zorkina YA, Morozova AY, Pavlichenko AV, Syunyakov TS, Karpenko OA, Kostyuk GP, Danilenko VN. Biomedicines. 2022 Sep 2;10(9):2162. doi: 10.3390/biomedicines10092162.

The Gene Expression Profile Differs in Growth Phases of the Bifidobacterium Longum Culture.

Veselovsky VA, Dyachkova MS, Bespiatykh DA, Yunes RA, Shitikov EA, Polyaeva PS, Danilenko VN, Olekhnovich EI, Klimina KM. Microorganisms. 2022 Aug 21;10(8):1683. doi: 10.3390/microorganisms10081683.

CRISPR-Cas Systems in Gut Microbiome of Children with Autism Spectrum Disorders.

Zakharevich NV, Nikitin MS, Kovtun AS, Malov VO, Averina OV, Danilenko VN, Artamonova II. Life (Basel). 2022 Mar 3;12(3):367. doi: 10.3390/life12030367.

What are the prospects for using complexes of copper(ii) and zinc(ii) to suppress the vital activity of Mycolicibacterium smegmatis?

Lutsenko IA, Baravikov DE, Koshenskova KA, Kiskin MA, Nelyubina YV, Primakov PV, Voronina YK, Garaeva VV, Aleshin DA, Aliev TM, Danilenko VN, Bekker OB, Eremenko IL. RSC Adv. 2022 Feb 10;12(9):5173-5183.

Repurposing Based Identification of Novel Inhibitors against MmpS5-MmpL5 Efflux Pump of Mycobacterium smegmatis: A Combined In Silico and In Vitro Study.

Shahbaaz M, Maslov DA, Vatlin AA, Danilenko VN, Grishina M, Christoffels A. Biomedicines. 2022 Jan 31;10(2):333. doi: 10.3390/biomedicines10020333.

Synthesis and Characterization of Novel 2-Acyl-3-trifluoromethylquinoxaline 1,4-Dioxides as Potential Antimicrobial Agents.

Buravchenko GI, Maslov DA, Alam MS, Grammatikova NE, Frolova SG, Vatlin AA, Tian X, Ivanov IV, Bekker OB, Kryakvin MA, Dontsova OA, Danilenko VN, Zhang T, Shchekotikhin AE. Pharmaceuticals (Basel). 2022 Jan 27;15(2):155. doi: 10.3390/ph15020155.

Lactobacilli: Legal Regulation and Prospects for New Generation Drugs.

Yunes RA, Poluektova EU, Belkina TV, Danilenko VN. Appl Biochem Microbiol. 2022; 58(5): 652-664. doi: 10.1134/S0003683822050179.

[Effects of diet on the gut microbiome in patients with depression].

Zorkina YA, Syunyakov TS, Abramova OV, Yunes RA, Averina OV, Kovtun AS, Angelova IY, Khobta EB, Susloparova DA, Pavlichenko AV, Karpenko OA, Andreyuk DS, Tovmasyan AS, Danilenko VN, Gurina OI, Kostyuk GP, Morozova AY. Zh Nevrol Psikhiatr Im S S Korsakova. 2022;122(1. Vyp. 2):59-64. doi: 10.17116/jnevro202212201259. PMID: 35238513 Russian.

2021

Salnikova LE, Kolobkov DS, Sviridova DA, Abilev SK. An overview of germline variations in genes of primary immunodeficiences through integrative analysis of ClinVar, HGMD® and dbSNP databases. Hum Genet 2021. V. 140. No. 9. P. 1379–1393. https://doi.org/10.1007/s00439-021-02316-w.

Khadzhieva MB, Kalinina EV, Larin SS, Sviridova DA, Gracheva AS, Chursinova JV, Stepanov VA, Redkin IV, Avdeikina LS, Rumyantsev AG, Kuzovlev AN, Salnikova LE. TREC/KREC Levels in Young COVID-19 Patients. Diagnostics. 2021; 11(8):1486. https://doi.org/10.3390/diagnostics11081486

Shestibratov K. A., O. Yu. Baranov, E. N. Mescherova, P. S. Kiryanov, S. V. Panteleev, L. V. Mozharovskaya, K. V. Krutovsky, V. E. Padutov 2021 Structure and phylogeny of the curly birch chloroplast genome. Frontiers in Genetics 12: 625764. https://doi.org/10.3389/fgene.2021.625764 Published: 4 October 2021 (IF = 4.772/4.933; Q2/1)

Perfileva A. I., O. M. Tsivileva, O. A. Nozhkina, M. S. Karepova, I. A. Graskova, T. V. Ganenko, B. G. Sukhov, K. V. Krutovsky 2021. Effect of natural polysaccharide matrix-based selenium nanocomposites on Phytophthora cactorum and rhizospheric microorganisms. Nanomaterials 11(9): 2274; https://doi.org/10.3390/nano11092274 Published: 1 September 2021 (IF = 5.719/5.810; Q1/2)

Khutsishvili S. S., A. I. Perfileva, O. A. Nozhkina, T. V. Ganenko, K. V. Krutovsky 2021 Novel Nanobiocomposites Based on Natural Polysaccharides as Universal Trophic Low-Dose Micronutrients. International Journal of Molecular Sciences 22(1): 12006; https://doi.org/10.3390/ijms222112006 Published: 5 November 2021 (IF = 6.208/6.628; Q1/Q1)

Titievsky, A.; Putintseva, Y.A.; Taranenko, E.A.; Baskin, S.; Oreshkova, N.V.; Brodsky, E.; Sharova, A. V.; Sharov, V.V.; Panov, J.; Kuzmin, D.A.; Brodsky, L.; Krutovsky, K.V. 2021 Comparative genomics analysis of repetitive elements in ten gymnosperm species: “dark repeatome” and its abundance in conifer and Gnetum species. Life 11(11): 1234; https://doi.org/10.3390/life11111234 Published: 15 November 2021 (IF = 3.251/na; Q1/2)

Dasgupta M. G., A. B. M. Parveen, S. Shanmugavel, V. Dharanishanthi, M. Muthupandi, N. Kumar, S. S. Chauhan, J. Kalaivanan, H. Mohan, K. V. Krutovsky, D. Rajasugunasekar. 2021 Targeted re-sequencing and genome-wide association analysis for wood property traits in breeding population of Eucalyptus tereticornis × E. grandis. Genomics 113(6): 4276-4292 https://doi.org/10.1016/j.ygeno.2021.11.013 Published: 14 November 2021 (IF = 4.310/4.380; Q2/2)

Belokopytova L. V., Zhirnova D. F., Meko D. M., Babushkina E. A., Vaganov E. A., Krutovsky K. V. 2021 Tree rings reveal the impact of soil temperature on larch growth in the forest-steppe of Siberia. Forests 12(12): 1765. Published: 14 December 2021 https://doi.org/10.3390/f12121765 (IF = 3.282/3.292; Q1/Q1)

A Novel Isogenic Human Cell-Based System for MEN1 Syndrome Generated by CRISPR/Cas9 Genome Editing.

Klementieva N, Goliusova D, Krupinova J, Yanvarev V, Panova A, Mokrysheva N, Kiselev SL. Int J Mol Sci. 2021 Nov 8;22(21):12054. doi: 10.3390/ijms222112054.

Recapitulative haematopoietic development of human pluripotent stem cells in the absence of exogenous haematopoietic cytokines.

Philonenko ES, Tan Y, Wang C, Zhang B, Shah Z, Zhang J, Ullah H, Kiselev SL, Lagarkova MA, Li D, Dai Y, Samokhvalov IM. J Cell Mol Med. 2021 Sep;25(18):8701-8714. doi: 10.1111/jcmm.16826.

Generation of an induced pluripotent stem cell line HPCASRi002-A from a patient with neonatal severe primary hyperparathyroidism caused by a compound heterozygous mutation in the CASR gene.

Panova AV, Kulikova KS, Klementieva NV, Krylov ID, Snezhko IO, Tiulpakov AN, Kiselev SL. Stem Cell Res. 2021 Jul;54:102414. doi: 10.1016/j.scr.2021.102414. Epub 2021 Jun 4.

Genetic Evidence of Authenticity of a Hair Shaft Relic from the Portrait of Tsesarevich Alexei, Son of the Last Russian Emperor.

Andreeva T, Manakhov A, Kunizheva S, Rogaev E. Biochemistry (Mosc). 2021 Dec;86(12):1572-1578. doi: 10.1134/S0006297921120063.

The gene regulation knowledge commons: the action area of GREEKC.

Kuiper M, Bonello J, Fernández-Breis JT, Bucher P, Futschik ME, Gaudet P, Kulakovskiy IV, Licata L, Logie C, Lovering RC, Makeev VJ, Orchard S, Panni S, Perfetto L, Sant D, Schulz S, Vercruysse S, Zerbino DR, Lægreid A; GRECO Consortium. Biochim Biophys Acta Gene Regul Mech. 2022 Jan;1865(1):194768. doi: 10.1016/j.bbagrm.2021.194768.

Cyclical fate restriction: a new view of neural crest cell fate specification.

Kelsh RN, Camargo Sosa K, Farjami S, Makeev V, Dawes JHP, Rocco A. Development. 2021; 148(22):dev176057. doi: 10.1242/dev.176057

DNA Environment of Centromeres and Non-Homologous Chromosomes Interactions in Mouse.

Spangenberg V, Losev M, Volkhin I, Smirnova S, Nikitin P, Kolomiets O. Cells. 2021 Dec 1;10(12):3375. doi: 10.3390/cells10123375.

Evaluation of the carbonylation of filamentous fungi proteins by dry immune dot blotting.

Mazheika IS, Semenova MA, Voronko OV, Psurtseva NV, Kolomiets OL, Kamzolkina OV. Fungal Biol. 2021 Nov;125(11):923-933. doi: 10.1016/j.funbio.2021.06.006.

The effects of Levilactobacillus brevis on the physiological parameters and gut microbiota composition of rats subjected to desynchronosis.

Olekhnovich EI, Batotsyrenova EG, Yunes RA, Kashuro VA, Poluektova EU, Veselovsky VA, Ilina EN, Danilenko VN, Klimina KM. Microb Cell Fact. 2021 Dec 20;20(1):226. doi: 10.1186/s12934-021-01716-x.

Matveevsky S, Grishaeva T. Heterogeneity in conservation of multifunctional partner enzymes with meiotic importance, CDK2 kinase and BRCA1 ubiquitin ligase // Peer J. 2021. 9:e12231 doi: 10.7717/peerj.12231. PMID: 3469225

Mazheika I.S., Semenova M.A., Voronko O.V., Psurtseva N.V., Kolomiets O.L, Kamzolkina O.V.Evaluation of the carbonylation of filamentous fungi proteins by dry immune dot blotting // Fungal Biol. Fungal Biol 2021 Nov;125(11):923-933. doi: 10.1016/j.funbio.2021.06.006. PMID: 34649679

Spangenberg V., Arakelyan M., Cioffi M., Liehr T., Al-Rikabi A., Martynova E., Stepanyan I., Danielyan F., Galoyan E., Kolomiets O. Cytogenetic mechanisms of unisexuality in rock lizards // Sci Rep. 2020 May 26;10(1):8697.doi: 10.1038/s41598-020-65686-7. PMID: 32457493

Nezametdinova V.Z., Yunes R.A., Dukhinova M.S., Alekseeva M.G., Danilenko V.N. The Role of the PFNA Operon of Bifidobacteria in the Recognition of Host’s Immune Signals: Prospects for the Use of the FN3 Protein in the Treatment of COVID-19 // Int. J. Mol. Sci. 2021, 22(17), 9219; https://doi.org/10.3390/ijms22179219

Habib N. A., M. Müller, O. Gailing, A. Patzelt, G. Al Issai, K. V. Krutovsky, M. Wiehle 2021 Genetic diversity and differentiation of Olea europaea subsp. cuspidata (Wall. & G. Don) Cif.in the Hajar Mountains of Oman. Genetic Resources and Crop Evolution 68(3): 865–883 https://doi.org/10.1007/s10722-020-01030-2 (IF = 1.071; Q3)

Cuervo-Alarcon L., M. Arend, M. Müller, C. Sperisen, R. Finkeldey, K. V. Krutovsky 2021 A candidate gene association analysis identifies SNPs potentially involved in drought tolerance in European beech (Fagus sylvatica L.). Scientific Report 11: 2386. https://doi.org/10.1038/s41598-021-81594-w (IF = 4.122; Q1)

Tarieiev A. S., O. Gailing, K. V. Krutovsky 2021 ITS secondary structure reconstruction to resolve taxonomy and phylogeny of the Betula L. genus. PeerJ 9:e10889 https://doi.org/10.7717/peerj.10889 (IF = 2.380; Q1)

Perfileva A. I., O. A. Nozhkina, T. V. Ganenko, I. A. Graskova, B. G. Sukhov, A. V. Artem’ev, B. A. Trofimov, K. V. Krutovsky 2021 Selenium nanocomposites in natural matrices as potato recovery agent. International Journal of Molecular Sciences 22(9), 4576; https://doi.org/10.3390/ijms22094576 (IF = 4.556; Q1)

Nieves-Orduña, H. E., M. Müller, K. V. Krutovsky, O. Gailing. 2021 Geographic patterns of genetic variation among cacao (Theobroma cacao L.) populations based on chloroplast markers. Diversity 2021, 13(6): 249 https://www.mdpi.com/1424-2818/13/6/249/ htm https://doi.org/10.3390/d13060249 (IF = 1.402; Q3)

Abramov S, Boytsov A, Bykova D, Penzar DD, Yevshin I, Kolmykov SK, Fridman MV, Favorov AV, Vorontsov IE, Baulin E, Kolpakov F, Makeev VJ, Kulakovskiy IV. Landscape of allele-specific transcription factor binding in the human genome. //Nat Commun. 2021 May 12;12(1):2751. doi: 10.1038/s41467-021-23007-0

Kramina T.E., Meschersky I.G., Degtjareva G.V., Samigullin T.H., Belokon Y.S., Schanzer I.A. Genetic variation in the Lotus corniculatus complex (Fabaceae) in northern Eurasia as inferred from nuclear microsatellites and plastid trnL-trnF sequences // Botanical Journal of the Linnean Society. 2018;188(1):87-116.
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Zolotareva K.I., Bannikova A.A., Belokon M.M., Belokon Y.S., Politov D.V., Rutovskaya M.V., Hlyap L.A., Starykov V.P., Lebedev V.S. Genetic diversity and structure of the hedgehogs Erinaceus europaeus and Erinaceus roumanicus: evidence for ongoing hybridization in Eastern Europe // Biological Journal of the Linnean Society. 2021;132(1):174-195.
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Stepchenkova EI, Zhuk AS, Cui J, Tarakhovskaya ER, Barbari SR, Shcherbakova PV, Polev DE, Fedorov R, Poliakov E, Rogozin IB, Lada AG, Pavlov YI Compensation for the absence of the catalytically active half of DNA polymerase ε in yeast by positively selected mutations in CDC28. // . Genetics. 2021 Apr 12:iyab060. doi: 10.1093/genetics/iyab060

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential.

Rabanus-Wallace MT, Hackauf B, Mascher M, Lux T, Wicker T, Gundlach H, Baez M, Houben A, Mayer KFX, Guo L, Poland J, Pozniak CJ, Walkowiak S, Melonek J, Praz CR, Schreiber M, Budak H, Heuberger M, Steuernagel B, Wulff B, Börner A, Byrns B, Čížková J, Fowler DB, Fritz A, Himmelbach A, Kaithakottil G, Keilwagen J, Keller B, Konkin D, Larsen J, Li Q, Myśków B, Padmarasu S, Rawat N, Sesiz U, Biyiklioglu-Kaya S, Sharpe A, Šimková H, Small I, Swarbreck D, Toegelová H, Tsvetkova N, Voylokov AV, Vrána J, Bauer E, Bolibok-Bragoszewska H, Doležel J, Hall A, Jia J, Korzun V, Laroche A, Ma XF, Ordon F, Özkan H, Rakoczy-Trojanowska M, Scholz U, Schulman AH, Siekmann D, Stojałowski S, Tiwari VK, Spannagl M, Stein N. Nat Genet. 2021 Apr;53(4):564-573. doi: 10.1038/s41588-021-00807-0. Epub 2021 Mar 18

Complete Genome Sequence of Rhodococcus sp. Strain M8, a Platform Strain for Acrylic Monomer Production.

Novikov AD, Lavrov KV, Kasianov AS, Topchiy MA, Gerasimova TV, Yanenko AS. Microbiol Resour Announc. 2021 Mar 11;10(10):e01314-20. doi: 10.1128/MRA.01314-20

Gil-Fernández A, Matveevsky S, Martín-Ruiz M, Ribagorda M, Parra MT, Viera A, Rufas JS, Kolomiets O, Bakloushinskaya I, Page J. Sex differences in the meiotic behavior of an XX sex chromosome pair in males and females of the mole vole Ellobius tancrei: turning an X into a Y chromosome?// Chromosoma. 2021 Apr 6. doi: 10.1007/s00412-021-00755-y

Danilova L, Wrangle J, Herman JG, Cope L. DNA-methylation for the detection and distinction of 19 human malignancies.// Epigenetics. 2021 Mar 5:1-11. doi: 10.1080/15592294.2021.1890885.

Konorov EA, Kurbakov KA, Minaev MY. Genome Sequencing of Kocuria varians Strain 80, Isolated from Starter Culture for Dry Sausage.// Microbiol Resour Announc. 2021 Feb 25;10(8):e00086-21. doi: 10.1128/MRA.00086-21.

Matveevsky S, Chassovnikarova T, Grishaeva T, Atsaeva M, Malygin V, Bakloushinskaya I, Kolomiets O. Kinase CDK2 in Mammalian Meiotic Prophase I: Screening for Hetero- and Homomorphic Sex Chromosomes.// Int J Mol Sci. 2021 Feb 17;22(4):1969. doi: 10.3390/ijms22041969.

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Vorontsov IE, Egorov AA, Anisimova AS, Eliseeva IA, Makeev VJ, Gladyshev VN, Dmitriev SE, Kulakovskiy IV. Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates.// Methods Mol Biol. 2021;2252:269-294. doi: 10.1007/978-1-0716-1150-0_13.

Kim K, Wang X, Ragonnaud E, Bodogai M, Illouz T, DeLuca M, McDevitt RA, Gusev F, Okun E, Rogaev E, Biragyn A. Therapeutic B-cell depletion reverses progression of Alzheimer's disease. // Nat Commun. 2021 Apr 12;12(1):2185. doi: 10.1038/s41467-021-22479-4.

Spangenberg V, Arakelyan M, Galoyan E, Martirosyan I, Bogomazova A, Martynova E, de Bello Cioffi M, Liehr T, Al-Rikabi A, Osipov F, Petrosyan V, Kolomiets O. Meiotic synapsis of homeologous chromosomes and mismatch repair protein detection in the parthenogenetic rock lizard Darevskia unisexualis. // Mol Reprod Dev. 2021 Feb;88(2):119-127. doi: 10.1002/mrd.23450.

Manakhov AD, Mintseva MY, Andreeva TV, Filimonov PA, Onokhov AA, Chernova IЕ, Kashtanov SN, Rogaev EI. Genome Analysis of Sable Fur Color Links a Lightened Pigmentation Phenotype to a Frameshift Variant in the Tyrosinase-Related Protein 1 Gene. // Genes (Basel). 2021; 12(2):157. doi: 10.3390/genes12020157.

Balanovsky O, Petrushenko V, Mirzaev K, Abdullaev S, Gorin I, Chernevskiy D, Agdzhoyan A, Balanovska E, Kryukov A, Temirbulatov I, Sychev D. Variation of Genomic Sites Associated with Severe Covid-19 Across Populations: Global and National Patterns. // Pharmgenomics Pers Med. 2021 Nov 4;14:1391-1402. doi: 10.2147/PGPM.S320609. eCollection 2021.

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Zhabagin M, Sabitov Z, Tazhigulova I, Alborova I, Agdzhoyan A, Wei LH, Urasin V, Koshel S, Mustafin K, Akilzhanova A, Li H, Balanovsky O, Balanovska Medieval Super-Grandfather founder of Western Kazakh Clans from Haplogroup C2a1a2-M48. // E. J Hum Genet. 2021 Jul;66(7):707-716. doi: 10.1038/s10038-021-00901-5.

Anisimov SV, Meshkov AN, Glotov AS, Borisova AL, Balanovsky OP, Belyaev VE, Granstrem OK, Grivtsova LY, Efimenko AY, Pokrovskaya MS, Semenenko TA, Sukhorukov VS, Kaprin AD, Drapkina OM. National Association of Biobanks and Biobanking Specialists: New Community for Promoting Biobanking Ideas and Projects in Russia. // Biopreserv Biobank. 2021 Feb;19(1):73-82. doi: 10.1089/bio.2020.0049.

Hallast P, Agdzhoyan A, Balanovsky O, Xue Y, Tyler-Smith C. A Southeast Asian origin for present-day non-African human Y chromosomes. // Hum Genet. 2021 Feb;140(2):299-307. doi: 10.1007/s00439-020-02204-9.

Kozlov AI, Balanovsky OP, Vershubskaya GG, Gorin IO, Balanovska EV, Lavryashina MB. [Genetically determined trehalase deficiency in various population groups of Russia and neighboring countries]. // Vopr Pitan. 2021;90(5):96-103. doi: 10.33029/0042-8833-2021-90-5-96-103. Epub 2021 Sep 1. PMID: 34719147 Russian.

Afsari B, Kuo A, Zhang Y, Li L, Lahouel K, Danilova L, Favorov A, Rosenquist TA, Grollman AP, Kinzler KW, Cope L, Vogelstein B, Tomasetti C. Supervised mutational signatures for obesity and other tissue-specific etiological factors in cancer.// Elife. 2021 Jan 25;10:e61082. doi: 10.7554/eLife.61082.

Novikov AD, Lavrov KV, Kasianov AS, Korzhenkov AA, Gubanova TA, Yanenko AS. Draft Genome Sequence of Rhodococcus erythropolis HX7, a Psychrotolerant Soil-Derived Oil Degrader.//Microbiol Resour Announc. 2021 Jan 21;10(3):e01353-20. doi: 10.1128/MRA.01353-20.

Vorontsov IE, Egorov AA, Anisimova AS, Eliseeva IA, Makeev VJ, Gladyshev VN, Dmitriev SE, Kulakovskiy IV. Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates. // Methods Mol Biol. 2021;2252:269-294. doi: 10.1007/978-1-0716-1150-0_13.

Kolmykov S, Yevshin I, Kulyashov M, Sharipov R, Kondrakhin Y, Makeev VJ, Kulakovskiy IV, Kel A, Kolpakov F. GTRD: an integrated view of transcription regulation. // Nucleic Acids Res. 2021 Jan 8;49(D1):D104-D111. doi: 10.1093/nar/gkaa1057

Humtsoe JO, Kim HS, Leonard B, Ling S, Keam B, Marchionni L, Afsari B, Considine M, Favorov AV, Fertig EJ, Kang H, Ha PK. Newly Identified Members of FGFR1 Splice Variants Engage in Cross-talk with AXL/AKT Axis in Salivary Adenoid Cystic Carcinoma.// Cancer Res. 2021 Feb 15;81(4):1001-1013. doi: 10.1158/0008-5472.CAN-20-1780.

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)¹. Klionsky DJ, Abdel-Aziz AK, Abdelfatah S... Kiselev SL... // Autophagy. 2021 Jan;17(1):1-382. doi: 10.1080/15548627.2020.1797280. Epub 2021 Feb 8. PMID: 33634751

Frolova SG, Klimina KM, Kumar R, Vatlin AA, Salunke DB, Kendrekar P, Danilenko VN, Maslov DA. Identification of Mutations Conferring Tryptanthrin Resistance to Mycobacterium smegmatis.// Antibiotics (Basel). 2020 Dec 23;10(1):6. doi: 10.3390/antibiotics10010006

Averina OV, Zorkina YA, Yunes RA, Kovtun AS, Ushakova VM, Morozova AY, Kostyuk GP, Danilenko VN, Chekhonin VP. Bacterial Metabolites of Human Gut Microbiota Correlating with Depression.// Int J Mol Sci. 2020 Dec 3;21(23):9234. doi: 10.3390/ijms21239234.

Galkin AP. Hypothesis: AA amyloidosis is a factor causing systemic complications after coronavirus disease. // Prion. 2021 Dec;15(1):53-55. doi: 10.1080/19336896.2021.1910468.

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A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease. Sethi S, Vorontsov IE, Kulakovskiy IV, Greenaway S, Williams J, Makeev VJ, Brown SDM, Simon MM, Mallon AM. BMC Genomics. 2020 Nov 2;21(1):754. doi: 10.1186/s12864-020-07109-5.

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Ramilowski JA, Yip CW, Agrawal S, Chang JC, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC, Ouyang JF, Parkinson N, Petri A, Roos L, Severin J, Yasuzawa K, Abugessaisa I, Akalin A, Antonov IV, Arner E, Bonetti A, Bono H, Borsari B, Brombacher F, Cameron CJ, Cannistraci CV, Cardenas R, Cardon M, Chang H, Dostie J, Ducoli L, Favorov A, Fort A, Garrido D, Gil N, Gimenez J, Guler R, Handoko L, Harshbarger J, Hasegawa A, Hasegawa Y, Hashimoto K, Hayatsu N, Heutink P, Hirose T, Imada EL, Itoh M, Kaczkowski B, Kanhere A, Kawabata E, Kawaji H, Kawashima T, Kelly ST, Kojima M, Kondo N, Koseki H, Kouno T, Kratz A, Kurowska-Stolarska M, Kwon ATJ, Leek J, Lennartsson A, Lizio M, López-Redondo F, Luginbühl J, Maeda S, Makeev VJ, Marchionni L, Medvedeva YA, Minoda A, Müller F, Muñoz-Aguirre M, Murata M, Nishiyori H, Nitta KR, Noguchi S, Noro Y, Nurtdinov R, Okazaki Y, Orlando V, Paquette D, Parr CJC, Rackham OJL, Rizzu P, Sánchez Martinez DF, Sandelin A, Sanjana P, Semple CAM, Shibayama Y, Sivaraman DM, Suzuki T, Szumowski SC, Tagami M, Taylor MS, Terao C, Thodberg M, Thongjuea S, Tripathi V, Ulitsky I, Verardo R, Vorontsov IE, Yamamoto C, Young RS, Baillie JK, Forrest ARR, Guigó R, Hoffman MM, Hon CC, Kasukawa T, Kauppinen S, Kere J, Lenhard B, Schneider C, Suzuki H, Yagi K, de Hoon MJL, Shin JW, Carninci P. Genome Res. 2020 Jul;30(7):1060-1072. doi: 10.1101/gr.254219.119.

Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study. Ambrosini G, Vorontsov I, Penzar D, Groux R, Fornes O, Nikolaeva DD, Ballester B, Grau J, Grosse I, Makeev V, Kulakovskiy I, Bucher P. Genome Biol. 2020 May 11;21(1):114. doi: 10.1186/s13059-020-01996-3.

Signaling Pathways Potentially Responsible for Foam Cell Formation: Cholesterol Accumulation or Inflammatory Response-What is First? Orekhov AN, Sukhorukov VN, Nikiforov NG, Kubekina MV, Sobenin IA, Foxx KK, Pintus S, Stegmaier P, Stelmashenko D, Kel A, Poznyak AV, Wu WK, Kasianov AS, Makeev VY, Manabe I, Oishi Y. Int J Mol Sci. 2020 Apr 14;21(8):2716. doi: 10.3390/ijms21082716.

Abdyyev V.K., Kiseleva E.V., Spangenberg V.E., Kolomiets O.L., Andrade N.S., Sant D.W., Dashinimaev E.B., Vorotelyak E.A., Vasiliev A.V. In vitro derived female hPGCLCs are unable to complete meiosis in embryoid bodies // Experimental Cell Research 2020. Volume 397. Issue 2, 15 December 2020. 112358 https://doi.org/10.1016/j.yexcr.2020.112358 PMID: 33160998

Galoyan, E., Moskalenko, V., Gabelaia, M., Tarkhnishvili, D., Spangenberg, V., Chamkina, A., Arakelyan, M. Syntopy of two species of rock lizards (Darevskia raddei and Darevskia portschinskii) may not lead to hybridization between the . Zoologischer Anzeiger, 2020.288, 43-52. https://doi.org/10.1016/j.jcz.2020.06.007 .

Matveevsky S., Kolomiets O., Bogdanov A., Alpeeva E., Bakloushinskaya I. Meiotic chromosome contacts as a plausible prelude for Robertsonian translocations. Genes. 2020; 11(4):386. doi: https://doi.org/10.3390/genes11040386 (Q2, IF 3,822).

Matveevsky S., Tretiakov A., Kashintsova A., Bakloushinskaya I., Kolomiets O. Meiotic nuclear architecture in distinct mole vole hybrids with Robertsonian translocations: chromosome chains, stretched centromeres, and distorted recombination // International Journal of Molecular Sciences. 2020; 21(20):7630. doi: https://doi.org/10.3390/ijms21207630 PMID: 33076404

Mazheika I., Voronko O., Kamzolkina O. Early endocytosis as a key to understanding mechanisms of plasma membrane tension regulation in filamentous fungi. // Biology of the Cell. 2020. Biol Cell. 2020 Dec;112(12):409-426. doi: https://doi.org/10.1111/boc.202000066 Epub 2020 Sep 9.PMID: 32860722 PMID: 32860722

Mazheika I., Voronko O., Kudryavtseva O., Novoselova D., Pozdnyakov L., Mukhin V., Kolomiets O., Kamzolkina O. Nitrogen-obtaining and -conserving strategies in xylotrophic basidiomycetes // Mycologia. 2020. 112(3):455-473. DOI: https://doi.org/10.1080/00275514.2020.1716567 PMID: 32238121

Mazheika I.S . Kamzolkina O.V. Does macrovesicular endocytosis occur in fungal hyphae? // Fungal Biology Reviews, 2021, V. 38, P. 1- 8 https://doi.org/10.1016/j.fbr.2021.07.001

Spangenberg V., Kolomiets O., Stepanyan I.,Galoyan E., Cioffi M, Martynova E., Martirosyan I., Grishaeva T., Danielyan F., Al-Rikabi A.,Liehr T., Arakelyan M. Evolution of the parthenogenetic rock lizard hybrid karyotype: Robertsonian translocation between two maternal chromosomes in Darevskia rostombekowi // Chromosoma. 2020. doi: https://doi.org/10.1007/s00412-020-00744-7 PMID: 3312381

Sethi S, Vorontsov IE, Kulakovskiy IV, Greenaway S, Williams J, Makeev VJ, Brown SDM, Simon MM, Mallon AM. A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease. // BMC Genomics. 2020 Nov 2;21(1):754. doi: 10.1186/s12864-020-07109-5.

Morozova I, Kasianov A, Bruskin S, Neukamm J, Molak M, Batieva E, Pudło A, Rühli FJ, Schuenemann VJ. New ancient Eastern European Yersinia pestis genomes illuminate the dispersal of plague in Europe.// Philos Trans R Soc Lond B Biol Sci. 2020 Nov 23;375(1812):20190569. doi: 10.1098/rstb.2019.0569. Epub 2020 Oct 5.

Svishcheva G., Babayan O., Lkhasaranov B., Tsendsuren A., Abdurasulov A., Stolpovsky Yu. Microsatellite Diversity and Phylogenetic Relationships among Eurasian Bos Taurus Breeds with an Emphasis on Rare and Ancient Local Cattle // Animals. 2020. T.10. № 9. P. 1493-1516. doi.org/10.3390/ani10091493 (IF 2.323, Q1 )

Zhabagin M, Sabitov Z, Tarlykov P, Tazhigulova I, Junissova Z, Yerezhepov D, Akilzhanov R, Zholdybayeva E, Wei LH, Akilzhanova A, Balanovsky O, Balanovska E The medieval Mongolian roots of Y-chromosomal lineages from South Kazakhstan. // . BMC Genet. 2020 Oct 22;21(Suppl 1):87. doi: 10.1186/s12863-020-00897-5.

Balanovska E, Lukianova E, Kagazezheva J, Maurer A, Leybova N, Agdzhoyan A, Gorin I, Petrushenko V, Zhabagin M, Pylev V, Kostryukova E, Balanovsky O. Optimizing the genetic prediction of the eye and hair color for North Eurasian populations. // BMC Genomics. 2020 Sep 10;21(Suppl 7):527. doi: 10.1186/s12864-020-06923-1.

Zhernakova DV, Brukhin V, Malov S, Oleksyk TK, Koepfli KP, Zhuk A, Dobrynin P, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Gorbunova A, Chernyaeva E, Shevchenko A, Kolchanova S, Komissarov A, Simonov S, Antonik A, Logachev A, Polev DE, Pavlova OA, Glotov AS, Ulantsev V, Noskova E, Davydova TK, Sivtseva TM, Limborska S, Balanovsky O, Osakovsky V, Novozhilov A, Puzyrev V, O'Brien SJ. Genome-wide sequence analyses of ethnic populations across Russia. //Genomics. 2020 Jan;112(1):442-458. doi: 10.1016/j.ygeno.2019.03.007.

Ongaro L, Scliar MO, Flores R, Raveane A, Marnetto D, Sarno S, Gnecchi-Ruscone GA, Alarcón-Riquelme ME, Patin E, Wangkumhang P, Hellenthal G, Gonzalez-Santos M, King RJ, Kouvatsi A, Balanovsky O, Balanovska E, Atramentova L, Turdikulova S, Mastana S, Marjanovic D, Mulahasanovic L, Leskovac A, Lima-Costa MF, Pereira AC, Barreto ML, Horta BL, Mabunda N, May CA, Moreno-Estrada A, Achilli A, Olivieri A, Semino O, Tambets K, Kivisild T, Luiselli D, Torroni A, Capelli C, Tarazona-Santos E, Metspalu M, Pagani L, Montinaro F. The Genomic Impact of European Colonization of the Americas. // Curr Biol. 2019 Dec 2;29(23):3974-3986.e4. doi: 10.1016/j.cub.2019.09.076.

A Multi-strain Potential Probiotic Formulation of GABA-Producing Lactobacillus plantarum 90sk and Bifidobacterium adolescentis 150 with Antidepressant Effects. Yunes RA, Poluektova EU, Vasileva EV, Odorskaya MV, Marsova MV, Kovalev GI, Danilenko VN. Probiotics Antimicrob Proteins. 2020 Sep;12(3):973-979. doi: 10.1007/s12602-019-09601-1.

FN3 protein fragment containing two type III fibronectin domains from B. longum GT15 binds to human tumor necrosis factor alpha in vitro. Dyakov IN, Mavletova DA, Chernyshova IN, Snegireva NA, Gavrilova MV, Bushkova KK, Dyachkova MS, Alekseeva MG, Danilenko VN. Anaerobe. 2020 Oct;65:102247. doi: 10.1016/j.anaerobe.2020.102247. Epub 2020 Aug 6.

Toxin-Antitoxin Systems: A Tool for Taxonomic Analysis of Human Intestinal Microbiota. Klimina KM, Voroshilova VN, Poluektova EU, Veselovsky VA, Yunes RA, Kovtun AS, Kudryavtseva AV, Kasianov AS, Danilenko VN. Toxins (Basel). 2020 Jun 12;12(6):388. doi: 10.3390/toxins12060388.

Transcriptomic dataset of Mycolicibacterium smegmatis exposed to an imidazo[1,2-b][1,2,4,5]tetrazine. Vatlin AA, Klimina KM, Frolova SG, Danilenko VN, Maslov DA. Data Brief. 2020 Jun 2;31:105805. doi: 10.1016/j.dib.2020.105805. eCollection

The bacterial neurometabolic signature of the gut microbiota of young children with autism spectrum disorders. Averina OV, Kovtun AS, Polyakova SI, Savilova AM, Rebrikov DV, Danilenko VN. J Med Microbiol. 2020 Apr;69(4):558-571. doi: 10.1099/jmm.0.001178.

MmpS5-MmpL5 Transporters Provide Mycobacterium smegmatis Resistance to imidazo[1,2-b][1,2,4,5]tetrazines. Maslov DA, Shur KV, Vatlin AA, Danilenko VN. Pathogens. 2020 Feb 28;9(3):166. doi:10.3390/pathogens9030166.

Bioinformatics analysis of genes of Streptomyces xinghaiensis (fradiae) ATCC 19609 with a focus on mutations conferring resistance to oligomycin A and its derivatives. Vatlin AA, Bekker OB, Lysenkova LN, Shchekotikhin AE, Danilenko VN. J Glob Antimicrob Resist. 2020 Sep;22:47-53. doi: 10.1016/j.jgar.2020.01.026.

Antibiotic Resistance Genes in the Gut Microbiota of Children with Autistic Spectrum Disorder as Possible Predictors of the Disease. Kovtun AS, Averina OV, Alekseeva MG, Danilenko VN. Microb Drug Resist. 2020 Nov;26(11):1307-1320. doi: 10.1089/mdr.2019.0325.

Generation of an induced pluripotent stem cell line MNDINSi001-A from a patient with neonatal diabetes caused by a heterozygous INS mutation. Panova AV, Klementieva NV, Sycheva AV, Goliusova DV, Khokhlov NV, Zubkova NA, Tiulpakov AN, Kiselev SL. Stem Cell Res. 2020 Jul 25;47:101929. doi:10.1016/j.scr.2020.101929.

Locally Delivered Umbilical Cord Mesenchymal Stromal Cells Reduce Chronic Inflammation in Long-Term Nonhealing Wounds: A Randomized Study. Suzdaltseva Y, Zhidkih S, Kiselev SL, Stupin V. Stem Cells Int. 2020 Feb 14;2020:5308609. doi: 10.1155/2020/5308609. eCollection 2020.

Genome analysis of American minks reveals link of mutations in Ras-related protein-38 gene to Moyle brown coat phenotype. Manakhov AD, Mintseva MY, Andreev IA, Uralsky LI, Andreeva TV, Trapezov OV, Rogaev EI. Sci Rep. 2020 Sep 28;10(1):15876. doi: 10.1038/s41598-020-72239-5.

The curly coat phenotype of the Ural Rex feline breed is associated with a mutation in the lipase H gene. Manakhov AD, Andreeva TV, Rogaev EI. Anim Genet. 2020 Aug;51(4):584-589. doi: 10.1111/age.12958.

Genetic Association Between Alzheimer's Disease Risk Variant of the PICALM Gene and EEG Functional Connectivity in Non-demented Adults. Ponomareva N, Andreeva T, Protasova M, Konovalov R, Krotenkova M, Malina D, Mitrofanov A, Fokin V, Illarioshkin S, Rogaev E. Front Neurosci. 2020 Apr 16;14:324. doi: 10.3389/fnins.2020.00324. eCollection 2020.

Dissection of the Human T-Cell Receptor γ Gene Repertoire in the Brain and Peripheral Blood Identifies Age- and Alzheimer's Disease-Associated Clonotype Profiles. Aliseychik M, Patrikeev A, Gusev F, Grigorenko A, Andreeva T, Biragyn A, Rogaev E. Front Immunol. 2020 Jan 29;11:12. doi: 10.3389/fimmu.2020.00012. eCollection 2020.

Chromatin profiling of cortical neurons identifies individual epigenetic signatures in schizophrenia. Gusev FE, Reshetov DA, Mitchell AC, Andreeva TV, Dincer A, Grigorenko AP, Fedonin G, Halene T, Aliseychik M, Filippova E, Weng Z, Akbarian S, Rogaev EI. Transl Psychiatry. 2019 Oct 17;9(1):256. doi: 10.1038/s41398-019-0596-1.

Pettenkofer T., R. Finkeldey, M. Müller, K. V. Krutovsky, B. Vornam, L. Leinemann, O. Gailing 2020 Genetic variation of introduced red oak (Quercus rubra) stands in Germany compared to North American populations. European Journal of Forest Research 139(2): 321–331 2020 https://doi.org/10.1007/s10342-019-01256-5 (IF = 2.451; Q1)

Lebedev V. G., N. M. Subbotina, O. P. Maluchenko, T. N. Lebedeva, K. V. Krutovsky, K. A. Shestibratov (2020) Transferability and polymorphism of SSR markers located in flavonoid pathway genes in Fragaria and Rubus species. Genes 11(1): 11 https://doi.org/10.3390/genes11010011 (IF = 3.759; Q2)

Caré O., O. Gailing, M. Müller, K. V. Krutovsky, L. Leinemann 2020 Crown morphology in Norway spruce (Picea abies [Karst.] L.) as adaptation to mountainous environments is associated with single nucleotide polymorphisms (SNPs) in genes regulating seasonal growth rhythm. Tree Genetics & Genomes 16(1): 4 https://doi.org/10.1007/s11295-019-1394-x (IF = 1.862; Q1)

Caré O., O. Gailing, M. Müller, K. V. Krutovsky, L. Leinemann (2020) Assoziation zwischen Kandidatengenen und der Kronenform der Fichte (Picea abies (L.) H. Karst.) zeigt die Klimaadaption autochthoner Hochlagenbestände. In Proceedings Liesebach M (ed) Forstpflanzenzüchtung für die Praxis: 6. Tagung der Sekti on Forstgenetik/Forstpflanzenzüchtung vom 16. Bis 18. September 2019 in Dresden: Tagungsband. Braunschweig: Johann Heinrich von Thünen-Institut, 296 p, Thünen Rep 76, doi:10.3220/rep1584625360000, pp. 73-80 (https://www.thuenen.de/media/publikationen/thuenen-report/Thuenen_Report_76.pdf)

Breidenbach N., H. Wildhagen, C. Bandurski, L. Engelhardt, M. Büttner, O. Gailing, K. V. Krutovsky (2020) Phänotypische und genetische Reaktionen von Sequoia sempervirens Herkünften auf Frosttemperaturen. In Proceedings Liesebach M (ed) Forstpflanzenzüchtung für die Praxis: 6. Tagung der Sekti on Forstgenetik/Forstpflanzenzüchtung vom 16. Bis 18. September 2019 in Dresden: Tagungsband. Braunschweig: Johann Heinrich von Thünen-Institut, 296 p, Thünen Rep 76, doi:10.3220/rep1584625360000, pp. 200-210 (https://www.thuenen.de/media/publikationen/thuenen-report/Thuenen_Report_76.pdf)

Vidyagina E. O., N. M. Subbotina, V. A. Belyi, V. G. Lebedev, K. V. Krutovsky, K. A. Shestibratov (2020) Various effects of the expression of the xyloglucanase gene from Penicillium canescens in transgenic aspen under semi-natural conditions. BMC Plant Biol 20, 251 https://doi.org/10.1186/s12870-020-02469-2 (IF = 3.497; Q1)

Caré O., O. Gailing, M. Müller, K. V. Krutovsky, L. Leinemann. 2020 Mating system in a native Norway spruce (Picea abies [L.] Karst.) stand - Relatedness and effective pollen population size show an association with the germination percentage of single tree progenies. Diversity 12(7): 266 https://doi.org/10.3390/d12070266 (IF = 1.402; Q3)

Breidenbach N., V. V. Sharov, O. Gailing, K. V. Krutovsky (2020) De novo transcriptome assembly of cold stressed clones of the hexaploid Sequoia sempervirens (D. Don) Endl. Scientific Data 7, 239 https://doi.org/10.1038/s41597-020-00576-1 (IF = 5.541; Q1)

Pettenkofer T.A., R. Finkeldey, M. Müller, K. V. Krutovsky, B. Vornam, L. Leinemann, O. Gailing Development of novel Quercus rubra chloroplast genome CAPS markers for haplotype identification. Silvae Genetica 2020; 69(1): 78-85 https://content.sciendo.com/view/journals/sg/69/1/article-p78.xml https://doi.org/10.2478/sg-2020-0011 (IF = 1.111; Q3)

Akulova V.S., V.V. Sharov, A.I. Aksyonova, Yu.A. Putintseva, N.V. Oreshkova, S.I. Feranchuk, D.A. Kuzmin, I.N. Pavlov, Y. A. Litovka, K.V. Krutovsky 2020 De novo sequencing, assembly and functional annotation of Armillaria borealis genome. BMC Genomics 21(Suppl 7): 534. https://doi.org/10.1186/s12864-020-06964-6 IF = 3.594; Q2)

Götz J., Konstantin V. Krutovsky, Ludger Leinemann, Markus Müller, Om P. Rajora, Oliver Gailing 2020 Chloroplast haplotypes of northern red oak (Quercus rubra L.) stands in Germany suggest their origin from northeastern Canada // Forests 11(9): 1025; https://doi.org/10.3390/f11091025 (IF = 2.221; Q1)

Putintseva Yu.A., E.I. Bondar, E.P. Simonov, V.V. Sharov, N.V. Oreshkova, D.A. Kuzmin, Yu.M. Konstantinov, V.N. Shmakov, V.I. Belkov, M.S. Sadovsky, O. Keech, K.V. Krutovsky 2020 Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known mitogenome. BMC Genomics 21: 654 https://doi.org/10.1186/s12864-020-07061-4 (IF = 3.594; Q2)

Kuchma O., D. Janz, L. Leinemann, A. Polle, K. V. Krutovsky, O. Gailing 2020 Hybrid and environmental effects on gene expression in poplar clones in pure and mixed with black locust stands. Forests 11(10): 1075 https://doi.org/10.3390/f11101075 (IF = 2.221; Q1)

Breidenbach N., O. Gailing, K. V. Krutovsky 2020 Genetic structure of coast redwood (Sequoia sempervirens [D. Don] Endl.) populations in and outside of the natural distribution range based on 2019nuclear and chloroplast microsatellite markers. PLoS One 15(12): e0243556. https://doi.org/10.1371/journal.pone.0243556 (IF = 2.740; Q2)

2019

Galoyan E., Bolshakova A., Abrahamyan M., Petrosyan R., Komarova V.1, Spangenberg V., Arakelyan M. Natural history of Valentin's rock lizard (Darevskia valentini) in Armenia // Zoological Research. 2019 Jul 18;40(4):277-292. DOI: https://doi.org/10.24272/j.issn.2095-8137.2019.036 PMID: 31310063

Shaikevich E., Bogacheva A., Rakova V., Ganushkina L., Ilinsky Yu., 2019. Wolbachia symbionts in mosquitoes: Intra- and intersupergroup recombinations, horizontal transmission and evolution. // Molecular Phylogenetics and Evolution. 134: 24-34, https://doi.org/10.1016/j.ympev.2019.01.020. (IF 3,5 Q1)

Shaikevich E, Bogacheva A., Ganushkina L. 2019. Dirofilaria and Wolbachia in mosquitoes (Diptera: Culicidae) in central European Russia and on the Black Sea coast. Parasite 26, 2. https://doi.org/10.1051/parasite/2019002 (IF 2,5 Q1)

Salnikova LE, Chernyshova EV, Anastasevich LA, Larin SS. Gene- and Disease-Based Expansion of the Knowledge on Inborn Errors of Immunity. Front Immunol. 2019 Oct 21;10:2475. doi: 10.3389/fimmu.2019.02475. eCollection 2019. PMID: 31695696. doi: 10.3389/fimmu.2019.02475. Impact Factor 4.716

Pneumonia: host susceptibility and shared genetics with pulmonary function and other traits. Khadzhieva MB, Kuzovlev AN, Salnikova LE. // Clin Exp Immunol. 2019 Sep 5. doi: 10.1111/cei.13367

Chromatin profiling of cortical neurons identifies individual epigenetic signatures in schizophrenia. Gusev FE, Reshetov DA, Mitchell AC, Andreeva TV, Dincer A, Grigorenko AP, Fedonin G, Halene T, Aliseychik M, Filippova E, Weng Z, Akbarian S, Rogaev EI. // Transl Psychiatry. 2019 Oct 17;9(1):256. doi: 10.1038/s41398-019-0596-1.

Tumor-derived Thymic stromal lymphopoietin expands bone marrow B-cell precursors in circulation to support metastasis.Ragonnaud E, Moritoh K, Bodogai M, Gusev F, Garaud S, Chen C, Wang X, Baljinnyam T, Becker KG, Maul RW, Willard-Gallo K, Rogaev E, Biragyn A. // Cancer Res. 2019 Oct 1. pii: canres.1058.2019. doi: 10.1158/0008-5472.CAN-19-1058. [Epub ahead of print]

Classification and monomer-by-monomer annotation dataset of suprachromosomal family 1 alpha satellite higher-order repeats in hg38 human genome assembly.Uralsky LI, Shepelev VA, Alexandrov AA, Yurov YB, Rogaev EI, Alexandrov IA. // Data Brief. 2019 Mar 8;24:103708. doi: 10.1016/j.dib.2019.103708. eCollection 2019 Jun.

Epigenetic-genetic chromatin footprinting identifies novel and subject-specific genes active in prefrontal cortex neurons.Gusev FE, Reshetov DA, Mitchell AC, Andreeva TV, Dincer A, Grigorenko AP, Fedonin G, Halene T, Aliseychik M, Goltsov AY, Solovyev V, Brizgalov L, Filippova E, Weng Z, Akbarian S, Rogaev EI. // FASEB J. 2019 Jul;33(7):8161-8173. doi: 10.1096/fj.201802646R.

Genome analysis identifies the mutant genes for common industrial Silverblue and Hedlund white coat colours in American mink.Manakhov AD, Andreeva TV, Trapezov OV, Kolchanov NA, Rogaev EI. // Sci Rep. 2019 Mar 14;9(1):4581. doi: 10.1038/s41598-019-40918-7.

Differentially Methylated Super-Enhancers Regulate Target Gene Expression in Human Cancer. Flam EL, Danilova L, Kelley DZ, Stavrovskaya E, Guo T, Considine M, Qian J, Califano JA, Favorov A, Fertig EJ, Gaykalova DA.// Sci Rep. 2019 Oct 21;9(1):15034. doi: 10.1038/s41598-019-51018-x.

Allele-specific nonstationarity in evolution of influenza A virus surface proteins. Popova AV, Safina KR, Ptushenko VV, Stolyarova AV, Favorov AV, Neverov AD, Bazykin GA. // Proc Natl Acad Sci U S A. 2019 Oct 15;116(42):21104-21112. doi: 10.1073/pnas.1904246116.

Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data. Davis-Marcisak EF, Sherman TD, Orugunta P, Stein-O'Brien GL, Puram SV, Roussos Torres ET, Hopkins AC, Jaffee EM, Favorov AV, Afsari B, Goff LA, Fertig EJ. // Cancer Res. 2019 Oct 1;79(19):5102-5112. doi: 10.1158/0008-5472.CAN-18-3882.

Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers. Ando M, Saito Y, Xu G, Bui NQ, Medetgul-Ernar K, Pu M, Fisch K, Ren S, Sakai A, Fukusumi T, Liu C, Haft S, Pang J, Mark A, Gaykalova DA, Guo T, Favorov AV, Yegnasubramanian S, Fertig EJ, Ha P, Tamayo P, Yamasoba T, Ideker T, Messer K, Califano JA. // Nat Commun. 2019 May 29;10(1):2415. doi: 10.1038/s41467-019-10557-7.

Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers. Ando M, Saito Y, Xu G, Bui NQ, Medetgul-Ernar K, Pu M, Fisch K, Ren S, Sakai A, Fukusumi T, Liu C, Haft S, Pang J, Mark A, Gaykalova DA, Guo T, Favorov AV, Yegnasubramanian S, Fertig EJ, Ha P, Tamayo P, Yamasoba T, Ideker T, Messer K, Califano JA. // Nat Commun. 2019 May 16;10(1):2188. doi: 10.1038/s41467-019-09937-w.

Breidenbach N., O. Gailing, K. V. Krutovsky 2019 Development of novel polymorphic nuclear and chloroplast microsatellite markers in coast redwood (Sequoia sempervirens). Plant Genetic Resources 17(3): 293–297 doi:10.1017/S147926211800045X https://doi.org/10.1017/S147926211800045X Published online: 04 December 2018 (IF = 0.869/0.813; Q4/Q2)

Kryvokhyzha M. V., K. V. Krutovsky, N. M. Rashydova 2019 Expression of flowering genes in Arabidopsis thaliana under acute and chronic irradiation. International Journal of Radiation Biology 95(5): 626–634 doi: 10.1080/09553002.2019.1562251 Published online: 3 January 2019 https://www.tandfonline.com/doi/pdf/10.1080/09553002.2019.1562251 (IF = 2.368/2.100; Q2/Q1)

Moler R. V. E., A. Abakir, M. Eleftheriou, J. S. Johnson, K. V. Krutovsky, L. C. Lewis, A. Ruzov, A. V. Whipple, O. P. Rajora, (2019) Population Epigenomics: Advancing Understanding of Phenotypic Plasticity, Acclimation, Adaptation and Diseases. Chapter in Population Genomics: Concepts, Approaches and Applications (Edited by Om Rajora), Springer, Cham, pp. 179-260. doi: 10.1007/13836_2018_59 (https://doi.org/10.1007/13836_2018_59)

Balkenhol N., Dudaniec R. Y., Krutovsky K. V., Johnson J. S., Cairns D. M., Segelbacher G., Selkoe K. A., von der Heyden S., Wang I. J., Selmoni O., Joost S. (2019) Landscape Genomics: Understanding Relationships Between Environmental Heterogeneity and Genomic Characteristics of Populations. Chapter in Population Genomics: Concepts, Approaches and Applications (Edited by Om Rajora), Springer, Cham, pp. 261-322. doi: 10.1007/13836_2017_2 (https://link.springer.com/chapter/10.1007/13836_2017_2)

Johnson, J. S., K. V. Krutovsky, O. P. Rajora, K. D. Gaddis, D. M. Cairns (2019) Advancing Biogeography through Population Genomics. Chapter in Population Genomics: Concepts, Approaches and Applications (Edited by Om Rajora), Springer, Cham, pp. 539-585. doi: 10.1007/13836_2018_39 (https://link.springer.com/chapter/10.1007/13836_2018_39)

Bondar E. I., Y. A. Putintseva, N. V. Oreshkova, K. V. Krutovsky 2019 Siberian larch (Larix sibirica Ledeb.) chloroplast genome and development of polymorphic chloroplast markers. BMC Bioinformatics 20(Suppl. 1): 38 doi: 10.1186/s12859-018-2571-x https://doi.org/10.1186/s12859-018-2571-x Published: 5 February 2019 (IF = 3.242/3.213; Q1)

Kuzmin, D. A., S. I. Feranchuk, V. V. Sharov, A. N. Cybin, S. V. Makolov, Y. A. Putintseva, N. V. Oreshkova, K. V. Krutovsky 2019 Stepwise large genome assembly approach: A case of Siberian larch (Larix sibirica Ledeb.). BMC Bioinformatics 20(Suppl. 1): 37 doi: 10.1186/s12859-018-2570-y https://doi.org/10.1186/s12859-018-2570-y Published: 5 February 2019 (IF = 3.242/3.213; Q1)

Semizer-Cuming D., K. V. Krutovsky, Y. N. Baranchikov, E. D. Kjӕr, C. G. Williams 2019 Saving the world’s ash forests calls for international cooperation now. Nature Ecology and Evolution 3(2): 141–144 https://doi.org/10.1038/s41559-018-0761-6 Published online: 10 December 2018 (IF = 12.543/12.561; Q1)

Pettenkofer T.A., K. Burkardt, C. Ammer, T. Vor, R. Finkeldey, M. Müller, K. Krutovsky, B. Vornam, L. Leinemann, O. Gailing 2019 Genetic diversity and differentiation of introduced red oak (Quercus rubra) in Germany in comparison with reference native North American populations. European Journal of Forest Research 138(2): 275–285 Published online: 06 February 2019 https://doi.org/10.1007/s10342-019-01167-5 (IF = 2.451/2.581; Q1)

Semerikov V. L., S. A. Semerikova, Y. A. Putintseva, N. V. Oreshkova, K. V. Krutovsky 2019 Mitochondrial DNA in Siberian conifers indicates multiple postglacial colonization centers. Canadian Journal of Forest Research. 49(8): 875–883 Published on the web 04 March 2019 https://doi.org/10.1139/cjfr-2018-0498 (IF = 1.812/2.162; Q2/Q1)

Mosca E., F. Cruz, J. Gómez Garrido, L. Bianco, C. Rellstab, S. Brodbeck, K. Csilléry, B. Fady, M. Fladung, B. Fussi, D. Gömöry, S. C. González-Martínez, D. Grivet, M. Gut, O. K. Hansen, K. Heer, Z. Kaya, K. V. Krutovsky, B. Kersten, S. Liepelt, L. Opgenoorth, C. Sperisen, K. K. Ullrich, G. G. Vendramin, M. Westergren, B. Ziegenhagen, T. Alioto, F. Gugerli, B. Heinze, M. Höhn, M. Troggio, D. B. Neale, 2019. A reference genome sequence for the European silver fir (Abies alba Mill.): a community-generated genomic resource. G3: Genes Genomes Genetics 9(7): 2039-2049 https://doi.org/10.1534/g3.119.400083 (IF = ‎2.781/3.026; Q3/Q1)

Kolesnikova A. I., Y. A. Putintseva, E. P. Simonov, V. V. Biriukov, N. V. Oreshkova, I. N. Pavlov, V. V. Sharov, D. A. Kuzmin, J. Anderson, K. V. Krutovsky 2019 Mobile genetic elements explain size variation in the mitochondrial genomes of four closely-related Armillaria species. BMC Genomics 20:351 https://doi.org/10.1186/s12864-019-5732-z doi: 10.1186/s12864-019-5732-z (IF = 3.594/4.093; Q2/Q1)

Lu M., C. A. Loopstra, K. V. Krutovsky 2019 Detecting the genetic basis of local adaptation in loblolly pine (Pinus taeda L.) using whole exome-wide genotyping and an integrative landscape genomics analysis approach. Ecology and Evolution 9(12): 6798-6809 https://doi.org/10.1002/ece3.5225 (IF = 2.392/2.749; Q2/Q1)

Lebedev V. G., Krutovsky K. V., Shestibratov K. A. 2019 …Fell Upas Sits, the Hydra-Tree of Death, or the Phytotoxicity of Trees. Molecules 24(8): 1636; https://doi.org/10.3390/molecules24081636 (IF = 3.267/3.589; Q2/Q1)

Tarieiev A. S., I. Olshanskyi, O. Gailing, K. V. Krutovsky 2019 Taxonomy of dark- and white-barked birches related to Betula pendula Roth and B. pubescens Ehrh. (Betulaceae) in Ukraine based on both morphological traits and DNA markers. Botanical Journal of the Linnean Society 191(1): 142–154 https://doi.org/10.1093/botlinnean/boz031 (IF = 2.076/2.557; Q2/Q1)

Lebedev V. G., N. M. Subbotina, O. P. Maluchenko, K. V. Krutovsky, K. A. Shestibratov (2019) Assessment of genetic diversity in differently colored raspberry cultivars using SSR markers located in flavonoid biosynthesis genes. Agronomy 9(9): 518; https://doi.org/10.3390/agronomy9090518 IF = 2.259; Q1)

Chiveu J.C., M. Mueller, K. V. Krutovsky, K. Kehlenbeck, E. Pawelzik, M. Naumann 2019 Genetic diversity of common guava in Kenya: an underutilized naturalized fruit species. Fruits 74(5): 236–248 https://doi.org/10.17660/th2019/74.5.4 (IF = 0.579/1.054; Q4/Q3)

de Melo Moura C. C.,Brambach F., Bado K. J. H., Krutovsky K. V., Kreft H., Tjitrosoedirdjo S. S., Siregar I. Z., Gailing O. Integrating DNA barcoding and traditional taxonomy for the identification of dipterocarps in remnant lowland forests of Sumatra. Plants 8(11), 461; https://doi.org/10.3390/plants8110461 (IF = 2.762; Q1)

Lu M., K. V. Krutovsky, C. A. Loopstra 2019 Predicting adaptive genetic variation of loblolly pine (Pinus taeda L.) populations under projected future climates based on multivariate models. Journal of Heredity 110(7): 857–865 https://doi.org/10.1093/jhered/esz065 (IF = 2.809/2.791; Q2/Q1)

Babushkina E. A., Zhirnova D. F., Belokopytova L. V., Tychkov I. I., Vaganov E. A., Krutovsky K. V. 2019 Response of four tree species to changing climate in a moisture-limited area of South Siberia. Forests 10(11): 999 https://doi.org/10.3390/f10110999 (IF = 2.221/2.484; Q1)

Lebedev V. G., Krutovsky K. V., Shestibratov K. A. 2019 Effect of phosphinothricin on transgenic downy birch (Betula pubescens Ehrh.) containing bar or GS1 genes. Forests 10(12): 1067; https://doi.org/10.3390/f10121067 (IF = 2.221/2.484; Q1)

Yakovlev I. A., D. Gackowski, A. Abakir, M. Viejo, A. Ruzov, R. Oliński, C. G. Fossdal, K. V. Krutovsky 2019 Mass spectrometry reveals the presence of specific set of epigenetic DNA modifications in the Norway spruce genome. Scientific Report 9: 19314 https://www.nature.com/articles/s41598-019-55826-z 10.1038/s41598-019-55826-z (IF = 3.998/4.576; Q1)

RNA-aptamers-As targeted inhibitors of protein functions in plants. Abdeeva IA, Maloshenok LG, Pogorelko GV, Mokrykova MV, Bruskin SA. // J Plant Physiol. 2019 Jan;232:127-129. doi: 10.1016/j.jplph.2018.10.026.

Sequencing and Analysis of Three Mycobacterium tuberculosis Genomes of the B0/N-90 Sublineage.

Zakharevich NV, Zaychikova MV, Shur KV, Bekker OB, Maslov DA, Danilenko VN. // Microbiol Resour Announc. 2019 Sep 26;8(39). pii: e00796-19. doi: 10.1128/MRA.00796-19.

The effects of desynchronosis on the gut microbiota composition and physiological parameters of rats.

Klimina KM, Batotsyrenova EG, Yunes RA, Gilyaeva EH, Poluektova EU, Kostrova TA, Kudryavtseva AV, Odorskaya MV, Kashuro VA, Kasianov AS, Ivanov MB, Danilenko VN. // BMC Microbiol. 2019 Jul 12;19(1):160. doi: 10.1186/s12866-019-1535-2.

Identification, functional and structural characterization of novel aminoglycoside phosphotransferase APH(3″)-Id from Streptomyces rimosus subsp. rimosus ATCC 10970.

Alekseeva MG, Boyko KM, Nikolaeva AY, Mavletova DA, Rudakova NN, Zakharevich NV, Korzhenevskiy DA, Ziganshin RH, Popov VO, Danilenko VN. // Arch Biochem Biophys. 2019 Aug 15;671:111-122. doi: 10.1016/j.abb.2019.06.008.

Synthesis and antimycobacterial activity of imidazo[1,2-b][1,2,4,5]tetrazines.

Maslov DA, Korotina AV, Shur KV, Vatlin AA, Bekker OB, Tolshchina SG, Ishmetova RI, Ignatenko NK, Rusinov GL, Charushin VN, Danilenko VN. // Eur J Med Chem. 2019 Sep 15;178:39-47. doi: 10.1016/j.ejmech.2019.05.081.

Synthesis, antimicrobial and antiproliferative properties of epi-oligomycin A, the (33S)-diastereomer of oligomycin A.

Lysenkova LN, Saveljev OY, Omelchuk OA, Zatonsky GV, Korolev AM, Grammatikova NE, Bekker OB, Danilenko VN, Dezhenkova LG, Mavletova DA, Scherbakov AM, Shchekotikhin AE. // Nat Prod Res. 2019 May 10:1-9. doi: 10.1080/14786419.2019.1608540. [Epub ahead of print]

Draft Genome Sequences of 12 Mycolicibacterium smegmatis Strains Resistant to Imidazo[1,2-b][1,2,4,5]Tetrazines.

Vatlin AA, Shur KV, Danilenko VN, Maslov DA. // Microbiol Resour Announc. 2019 Apr 18;8(16). pii: e00263-19. doi: 10.1128/MRA.00263-19.

Mutations in Efflux Pump Rv1258c (Tap) Cause Resistance to Pyrazinamide, Isoniazid, and Streptomycin in M. tuberculosis.

Liu J, Shi W, Zhang S, Hao X, Maslov DA, Shur KV, Bekker OB, Danilenko VN, Zhang Y. // Front Microbiol. 2019 Feb 19;10:216. doi: 10.3389/fmicb.2019.00216. eCollection 2019.

Neuropeptides in the microbiota-brain axis and feeding behavior in autism spectrum disorder.

Fetissov SO, Averina OV, Danilenko VN. // Nutrition. 2019 May;61:43-48. doi: 10.1016/j.nut.2018.10.030.

Draft Genome Sequence of Streptomyces xinghaiensis (fradiae) OlgR, a Strain Resistant to Oligomycin A.

Bekker OB, Vatlin AA, Zakharevich NV, Lysenkova LN, Shchekotikhin AE, Danilenko VN. // Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01531-18. doi: 10.1128/MRA.01531-18. eCollection 2019 Jan.

Lysenkoism Against Genetics: The Meeting of the Lenin All-Union Academy of Agricultural Sciences of August 1948, Its Background, Causes, and Aftermath. Borinskaya SA, Ermolaev AI, Kolchinsky EI.// Genetics. 2019 May;212(1):1-12. doi: 10.1534/genetics.118.301413.

Changes in Biological Pathways During 6,000 Years of Civilization in Europe.

Chekalin E, Rubanovich A, Tatarinova TV, Kasianov A, Bender N, Chekalina M, Staub K, Koepke N, Rühli F, Bruskin S, Morozova I. // Mol Biol Evol. 2019 Jan 1;36(1):127-140. doi: 10.1093/molbev/msy201

Heteroplasmic Variants of Mitochondrial DNA in Atherosclerotic Lesions of Human Aortic Intima.

Sobenin IA, Zhelankin AV, Khasanova ZB, Sinyov VV, Medvedeva LV, Sagaidak MO, Makeev VJ, Kolmychkova KI, Smirnova AS, Sukhorukov VN, Postnov AY, Grechko AV, Orekhov AN. // Biomolecules. 2019 Sep 6;9(9). pii: E455. doi: 10.3390/biom9090455.

Employing toxin-antitoxin genome markers for identification of Bifidobacterium and Lactobacillus strains in human metagenomes.

Klimina KM, Kasianov AS, Poluektova EU, Emelyanov KV, Voroshilova VN, Zakharevich NV, Kudryavtseva AV, Makeev VJ, Danilenko VN.// PeerJ. 2019 Mar 4;7:e6554. doi: 10.7717/peerj.6554. eCollection 2019.

Defensin-like peptides in wheat analyzed by whole-transcriptome sequencing: a focus on structural diversity and role in induced resistance.

Odintsova TI, Slezina MP, Istomina EA, Korostyleva TV, Kasianov AS, Kovtun AS, Makeev VJ, Shcherbakova LA, Kudryavtsev AM.// PeerJ. 2019 Jan 8;7:e6125. doi: 10.7717/peerj.6125. eCollection 2019.

The genetic history of admixture across inner Eurasia.

Jeong C, Balanovsky O, Lukianova E, Kahbatkyzy N, Flegontov P, Zaporozhchenko V, Immel A, Wang CC, Ixan O, Khussainova E, Bekmanov B, Zaibert V, Lavryashina M, Pocheshkhova E, Yusupov Y, Agdzhoyan A, Koshel S, Bukin A, Nymadawa P, Turdikulova S, Dalimova D, Churnosov M, Skhalyakho R, Daragan D, Bogunov Y, Bogunova A, Shtrunov A, Dubova N, Zhabagin M, Yepiskoposyan L, Churakov V, Pislegin N, Damba L, Saroyants L, Dibirova K, Atramentova L, Utevska O, Idrisov E, Kamenshchikova E, Evseeva I, Metspalu M, Outram AK, Robbeets M, Djansugurova L, Balanovska E, Schiffels S, Haak W, Reich D, Krause J. // Nat Ecol Evol. 2019 Jun;3(6):966-976. doi: 10.1038/s41559-019-0878-2.

Genome-wide sequence analyses of ethnic populations across Russia.

Zhernakova DV, Brukhin V, Malov S, Oleksyk TK, Koepfli KP, Zhuk A, Dobrynin P, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Gorbunova A, Chernyaeva E, Shevchenko A, Kolchanova S, Komissarov A, Simonov S, Antonik A, Logachev A, Polev DE, Pavlova OA, Glotov AS, Ulantsev V, Noskova E, Davydova TK, Sivtseva TM, Limborska S, Balanovsky O, Osakovsky V, Novozhilov A, Puzyrev V, O'Brien SJ. // Genomics. 2019 Mar 19. pii: S0888-7543(18)30741-9. doi: 10.1016/j.ygeno.2019.03.007.

Ancient human genome-wide data from a 3000-year interval in the Caucasus corresponds with eco-geographic regions.

Wang CC, Reinhold S, Kalmykov A, Wissgott A, Brandt G, Jeong C, Cheronet O, Ferry M, Harney E, Keating D, Mallick S, Rohland N, Stewardson K, Kantorovich AR, Maslov VE, Petrenko VG, Erlikh VR, Atabiev BC, Magomedov RG, Kohl PL, Alt KW, Pichler SL, Gerling C, Meller H, Vardanyan B, Yeganyan L, Rezepkin AD, Mariaschk D, Berezina N, Gresky J, Fuchs K, Knipper C, Schiffels S, Balanovska E, Balanovsky O, Mathieson I, Higham T, Berezin YB, Buzhilova A, Trifonov V, Pinhasi R, Belinskij AB, Reich D, Hansen S, Krause J, Haak W.// Nat Commun. 2019 Feb 4;10(1):590. doi: 10.1038/s41467-018-08220-8.

Ali, H. B. M., A. Abubakari, M. Wiehle, K. V. Krutovsky, 2018 Gene-specific sex-linked genetic markers in date palm (Phoenix dactylifera L.). Genetic Resources and Crop Evolution 65(1): 1-10 https://doi.org/10.1007/s10722-017-0564-7 (IF = 1.294; Q1/2)

Pavlov, I. N., Y. A Litovka, T. V. Ryazanova, N. A. Chuprova, E. A. Litvinova, Y. A. Putintseva, U. Kües, K. V. Krutovsky, 2018 Phylogenetic relationships, pathogenic traits, and wood-destroying properties of Porodaedalea niemelaei M. Fischer isolated in the northern forest limit of Larix gmelinii open woodlands in the permafrost area. Journal of Siberian Federal University. Biology 11(1): 30-48 DOI: 10.17516/1997-1389-0039 http://elib.sfu-kras.ru/bitstream/2311/70290/8/03_Pavlov_15_05.pdf (IF = 0.316; Q4)

Kornienko I.V., Faleeva T.G., Oreshkova N.V., Grigoriev S.E., Grigoreva L.V., Simonov E.P., Kolesnikova A.I., Putintseva Yu.A., Krutovsky K.V. 2018 Complete mitochondrial genome of a woolly mammoth (Mammuthus primigenius) from Maly Lyakhovsky Island (New Siberian Islands, Russia) and its phylogenetic assessment. Mitochondrial DNA Part B. Resources 3(2): 596-598 http://dx.doi.org/10.1080/23802359.2018.1473721 (IF = 0.490; Q4)

Liu, C. L. C., O. Kuchma, K. V. Krutovsky 2018 Mixed-species versus monocultures in plantation forestry: Development, benefits, ecosystem services and perspectives for the future. Global Ecology and Conservation 15: e00419. doi: 10.1016/j.gecco.2018.e00419. https://doi.org/10.1016/j.gecco.2018.e00419 (IF = 1.81; Q2)

Müller M., L. Cuervo-Alarcon, O. Gailing, Rajendra K.C., M. S. Chhetri, S. Seifert, M. Arend, K. V. Krutovsky, R. Finkeldey 2018 Genetic Variation of European Beech Populations and Their Progeny from Northeast Germany to Southwest Switzerland. Forests 9(8): 469. doi:10.3390/f9080469. https://doi.org/10.3390/f9080469 Published: 1 August 2018 (IF = 2.221; Q1)

Nawaz M. A., K. V. Krutovsky, M. Müller, O. Gailing, A. A. Khan, A. Buerkert, M. Wiehle 2018 Morphological and Genetic Diversity of Sea Buckthorn (Hippophae rhamnoides L.) in the Karakoram Mountains of Northern Pakistan. Diversity 10(3): 76; https://doi.org/10.3390/d10030076 Published: 30 July 2018 (IF = 2.047; Q1)

Semerikov, V.L., S.A. Semerikova, Y.A. Putintseva, V. V. Tarakanov, I. V. Tikhonova, A. I. Vidyakin, N.V. Oreshkova, and K.V. Krutovsky, 2018 Colonization history of Scots pine in Eastern Europe and North Asia based on mitochondrial DNA variation. Tree Genetics & Genomes 14:8 https://doi.org/10.1007/s11295-017-1222-0 Published: 8 Jan 2018 (IF = 1.862 Q1)

Cuervo-Alarcon L., M. Arend, M. Müller, C. Sperisen, R. Finkeldey, K. V. Krutovsky 2018 Genetic variation and signatures of natural selection in populations of European beech (Fagus sylvatica L.) along precipitation gradients. Tree Genetics & Genomes 14:84 https://doi.org/10.1007/s11295-018-1297-2 First Online: 30 October 2018 (IF = 1.862 Q1)

Lu M., C. M. Seeve, C. A. Loopstra, K. V. Krutovsky 2018 Exploring the genetic basis of gene transcript abundance and metabolite level in loblolly pine (Pinus taeda L.) using association mapping and network construction. BMC Genetics 19:100 https://doi.org/10.1186/s12863-018-0687-7 Published: 6 November 2018 (IF = 2.469; Q1)

Shestibratov K. A., O. Yu. Baranov, N. M. Subbotina, V. G. Lebedev, S. V. Panteleev, K. V. Krutovsky, V. E. Padutov 2018 Early detection and identification of the main fungal pathogens for resistance evaluation of new genotypes of forest trees. Forests 9(12): 732; https://doi.org/10.3390/f9120732 Published: 23 November 2018 (IF = 2.221; Q1)

Caré O., M. Müller, B. Vornam, A. M. Höltken, K. Kahlert, K. V. Krutovsky, O. Gailing, L. Leinemann 2018 Hight morphological differentiation in crown architecture is weakly reflected in the population genetic structure of German Norway spruce stands. Forests 9(12): 752 doi: 10.3390/f9120752 https://www.mdpi.com/1999-4907/9/12/752/htm Published: Dec 4, 2018 (IF = 2.221; Q1)

Simonov E., A. Lisachov, N. Oreshkova, K. V. Krutovsky 2018 The mitogenome of Elaphe bimaculata (Reptilia: Colubridae) has never been published: a case with the complete mitochondrial genome of E. dione. Acta Herpetologica 13(2): 185-189, Published: Dec 1, 2018 https://doi.org/10.13128/Acta_Herpetol-23394 doi: 10.13128/Acta_Herpetol-23394 (IF = 0.729; Q3)

Tambets K, Yunusbayev B, Hudjashov G, Ilumäe AM, Rootsi S, Honkola T, Vesakoski O, Atkinson Q, Skoglund P, Kushniarevich A, Litvinov S, Reidla M, Metspalu E, Saag L, Rantanen T, Karmin M, Parik J, Zhadanov SI, Gubina M, Damba LD, Bermisheva M, Reisberg T, Dibirova K, Evseeva I, Nelis M, Klovins J, Metspalu A, Esko T, Balanovsky O, Balanovska E, Khusnutdinova EK, Osipova LP, Voevoda M, Villems R, Kivisild T, Metspalu M. Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations. // Genome Biol. 2018 Sep 21;19(1):139. doi: 10.1186/s13059-018-1522-1.

Extraordinary centromeres: differences in the meiotic chromosomes of two rock lizards species Darevskia portschinskii and Darevskia raddei. Spangenberg V, Arakelyan M, Galoyan E, Pankin M, Petrosyan R, Stepanyan I, Grishaeva T, Danielyan F, Kolomiets O. // PeerJ. 2019 Jan 30;7:e6360. doi: 10.7717/peerj.6360. eCollection 2019.

Effects of early social deprivation on epigenetic statuses and adaptive behavior of young children: A study based on a cohort of institutionalized infants and toddlers. Naumova OY, Rychkov SY, Kornilov SA, Odintsova VV, Anikina VО, Solodunova MY, Arintcina IA, Zhukova MA, Ovchinnikova IV, Burenkova OV, Zhukova OV, Muhamedrahimov RJ, Grigorenko EL. // PLoS One. 2019 Mar 26;14(3):e0214285. doi: 10.1371/journal.pone.0214285.

2018

Zolotarenko A, Chekalin E, Piruzian E, Bruskin S. FRA1 mediates the activation of keratinocytes: Implications for the development of psoriatic plaques. // Biochim Biophys Acta Mol Basis Dis. 2018 Sep 14;1864(12):3726-3734. doi: 10.1016/j.bbadis.2018.09.016.

Abdeeva IA, Pogorelko GV, Maloshenok LG, Mokrykova MV, Fursova OV, Bruskin SA. Search for Partner Proteins of A. thaliana Immunophilins Involved in the Control of Plant Immunity. // Molecules. 2018 Apr 19;23(4). pii: E953. doi: 10.3390/molecules23040953.

Khalilipour N, Baranova A, Jebelli A, Heravi-Moussavi A, Bruskin S, Abbaszadegan MR. Familial Esophageal Squamous Cell Carcinoma with damaging rare/germline mutations in KCNJ12/KCNJ18 and GPRIN2 genes. // Cancer Genet. 2018 Feb;221:46-52. doi: 10.1016/j.cancergen.2017.11.011

Vorontsov IE, Fedorova AD, Yevshin IS, Sharipov RN, Kolpakov FA, Makeev VJ, Kulakovskiy IV. Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data. // BMC Res Notes. 2018 Oct 23;11(1):756. doi: 10.1186/s13104-018-3856-x.

Orekhov AN, Oishi Y, Nikiforov NG, Zhelankin AV, Dubrovsky L, Sobenin IA, Kel A, Stelmashenko D, Makeev VJ, Foxx K, Jin X, Kruth HS, Bukrinsky M. Modified Ldl Particles Activate Inflammatory Pathways In Monocyte-Derived Macrophages: Transcriptome Analysis. // Curr Pharm Des. 2018 Sep 11. doi: 10.2174/1381612824666180911120039.

Orekhov AN, Pushkarsky T, Oishi Y, Nikiforov NG, Zhelankin AV, Dubrovsky L, Makeev VJ, Foxx K, Jin X, Kruth HS, Sobenin IA, Sukhorukov VN, Zakiev ER, Kontush A, Le Goff W, Bukrinsky M. HDL activates expression of genes stimulating cholesterol efflux in human monocyte-derived macrophages. // Exp Mol Pathol. 2018 Oct;105(2):202-207. doi: 10.1016/j.yexmp.2018.08.003.

Babenko VN, Afonnikov DA, Ignatieva EV, Klimov AV, Gusev FE, Rogaev EI. Haplotype analysis of APOE intragenic SNPs. // BMC Neurosci. 2018 Apr 19;19(Suppl 1):16. doi: 10.1186/s12868-018-0413-4

Pilsner JR, Shershebnev A, Medvedeva YA, Suvorov A, Wu H, Goltsov A, Loukianov E, Andreeva T, Gusev F, Manakhov A, Smigulina L, Logacheva M, Shtratnikova V, Kuznetsova I, Speranskiy-Podobed P, Burns JS, Williams PL, Korrick S, Lee MM, Rogaev E, Hauser R, Sergeyev O Peripubertal serum dioxin concentrations and subsequent sperm methylome profiles of young Russian adults. // Reprod Toxicol. 2018 Jun;78:40-49. doi: 10.1016/j.reprotox.2018.03.007

Saik OV, Demenkov PS, Ivanisenko TV, Bragina EY, Freidin MB, Goncharova IA, Dosenko VE, Zolotareva OI, Hofestaedt R, Lavrik IN, Rogaev EI, Ivanisenko VA. Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks. // BMC Med Genomics. 2018 Feb 13;11(Suppl 1):15. doi: 10.1186/s12920-018-0331-4.

Gunbin KV, Ponomarenko MP, Suslov VV, Gusev F, Fedonin GG, Rogaev EI. Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation. // Mol Neurobiol. 2018 Mar;55(3):1871-1904. doi: 10.1007/s12035-017-0427-4

Kozlov EN, Martynova EU, Popenko VI, Schal C, Mukha DV. Intracellular Localization of Blattella germanica Densovirus (BgDV1) Capsid Proteins. // Viruses. 2018 Jul 14;10(7). pii: E370. doi: 10.3390/v10070370.

Miteva AS, Gaydukov AE, Shestopalov VI, Balezina OP. Mechanism of P2X7 receptor-dependent enhancement of neuromuscular transmission in pannexin 1 knockout mice. // Purinergic Signal. 2018 Oct 25. doi: 10.1007/s11302-018-9630-7.

Stepchenkova EI, Shiriaeva AA, Pavlov YI. Deletion of the DEF1 gene does not confer UV-immutability but frequently leads to self-diploidization in yeast Saccharomyces cerevisiae. // DNA Repair (Amst). 2018 Oct;70:49-54. doi: 10.1016/j.dnarep.2018.08.026

Zubritskiy A, Medvedeva YA. DNA sequence features in the establishing of H3K27ac. // Version 2. F1000Res. 2018 Feb 8 [revised 2018 Jan 1];7:165. doi:10.12688/f1000research.13441.2. eCollection 2018

Matveevsky S., Ivanitskaya E., Spangenberg V., Bakloushinskaya I., Kolomiets O. Reorganization of the Y Chromosomes Enhances Divergence in Israeli Mole Rats Nannospalax ehrenbergi (Spalacidae, Rodentia): Comparative Analysis of Meiotic and Mitotic Chromosomes. Genes 2018, 9, 272. doi:10.3390/genes9060272. http://www.mdpi.com/2073-4425/9/6/272

Matveevsky S, Kolomiets O, Bogdanov A, Hakhverdyan M, Bakloushinskaya I. Chromosomal Evolution in Mole Voles Ellobius (Cricetidae, Rodentia): Bizarre Sex Chromosomes, Variable Autosomes and Meiosis. // Genes (Basel). 2017. 8(11): E306. IF=3,6

Matveevsky SN, Pavlova SV, Atsaeva MM, Searle JB, Kolomiets OL. Dual mechanism of chromatin remodeling in the common shrew sex trivalent (XY1Y2). // Comp Cytogenet. 2017. 11(4):727-745. IF - 1,151

Blagodatskikh KA, Kramarov VM, Barsova EV, Garkovenko AV, Shcherbo DS, Shelenkov AA, Ustinova VV, Tokarenko MR, Baker SC, Kramarova TV, Ignatov KB. Improved DOP-PCR (iDOP-PCR): A robust and simple WGA method for efficient amplification of low copy number genomic DNA. // PLoS One. 2017 Sep 11;12(9):e0184507. doi: 10.1371/journal.pone.0184507 Импакт фактор - 2.806

Bondar N, Bryzgalov L, Ershov N, Gusev F, Reshetnikov V, Avgustinovich D, Tenditnik M, Rogaev E, Merkulova T. Molecular Adaptations to Social Defeat Stress and Induced Depression in Mice. // Mol Neurobiol. 2017 May 12. doi: 10.1007/s12035-017-0586-3.

Lukiw WJ, Rogaev EI. Genetics of Aggression in Alzheimer's Disease (AD). // Front Aging Neurosci. 2017 Apr 10;9:87. doi: 10.3389/fnagi.2017.00087.

Zolotarenko A, Chekalin E, Mehta R, Baranova A, Tatarinova TV, Bruskin S. Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments. // Methods Mol Biol. 2017;1613:355-370. doi: 10.1007/978-1-4939-7027-8_14.

Zhabagin M, Balanovska E, Sabitov Z, Kuznetsova M, Agdzhoyan A, Balaganskaya O, Chukhryaeva M, Markina N, Romanov A, Skhalyakho R, Zaporozhchenko V, Saroyants L, Dalimova D, Davletchurin D, Turdikulova S, Yusupov Y, Tazhigulova I, Akilzhanova A, Tyler-Smith C, Balanovsky O. The Connection of the Genetic, Cultural and Geographic Landscapes of Transoxiana. // Sci Rep. 2017 Jun 8;7(1):3085. doi: 10.1038/s41598-017-03176-z.

Khadzhieva MB, Kolobkov DS, Kamoeva SV, Salnikova LE. Expression changes in pelvic organ prolapse: a systematic review and in silico study. // Sci Rep. 2017 Aug 9;7(1):7668. doi: 10.1038/s41598-017-08185-6.

de Rie D, Abugessaisa I, Alam T, Arner E, Arner P, Ashoor H, Åström G, Babina M, Bertin N, Burroughs AM, Carlisle AJ, Daub CO, Detmar M, Deviatiiarov R, Fort A, Gebhard C, Goldowitz D, Guhl S, Ha TJ, Harshbarger J, Hasegawa A, Hashimoto K, Herlyn M, Heutink P, Hitchens KJ, Hon CC, Huang E, Ishizu Y, Kai C, Kasukawa T, Klinken P, Lassmann T, Lecellier CH, Lee W, Lizio M, Makeev V, Mathelier A, Medvedeva YA, Mejhert N, Mungall CJ, Noma S, Ohshima M, Okada-Hatakeyama M, Persson H, Rizzu P, Roudnicky F, Sætrom P, Sato H, Severin J, Shin JW, Swoboda RK, Tarui H, Toyoda H, Vitting-Seerup K, Winteringham L, Yamaguchi Y, Yasuzawa K, Yoneda M, Yumoto N, Zabierowski S, Zhang PG, Wells CA, Summers KM, Kawaji H, Sandelin A, Rehli M; FANTOM Consortium, Hayashizaki Y, Carninci P, Forrest ARR, de Hoon MJL. An integrated expression atlas of miRNAs and their promoters in human and mouse. // Nat Biotechnol. 2017 Sep;35(9):872-878. doi: 10.1038/nbt.3947

Lu, M., Krutovsky K. V. , Nelson C.D., West J. B., Reilly N. A., Loopstra C. A. Association genetics of growth and adaptive traits in loblolly pine (Pinus taeda L.) using whole exome-discovered polymorphisms. // Tree Genetics and Genomes, 2017, 13(3): 57 IF = 2.132

http://link.springer.com/article/10.1007/s11295-017-1140-1

Johnson J.S., Gaddis K. D., Cairns D. M., Krutovsky K. V. Seed dispersal at alpine treeline: an assessment of seed movement within the alpine treeline ecotone. // Ecosphere, 2017, 8(1):e01649. IF = 2.860
10.1002/ecs2.1649

Spangenberg, V., Arakelyan, M., Galoyan, E., Matveevsky, S., Petrosyan, R., Bogdanov, Y., Danielyan F., Kolomiets, O. Reticulate Evolution of the Rock Lizards: Meiotic Chromosome Dynamics and Spermatogenesis in Diploid and Triploid Males of the Genus Darevskia. Genes, 2017, 8(6), 149. doi:10.3390/genes8060149 , Impact Factor 3.24

Naumova O.Yu., Rychkov S.Yu, Kuznetzova T.V., Odintsova V.V., Kornilov S.A., Grigorenko E.L. DNA methylation alterations in the genome of a toddler with cri-du-chat syndrome. Clinical Case Reports. 2017. http://dx.doi.org/10.1002/ccr3.1274

Naumova O.Yu., Hein S., Suderman M., Lee M., Raefski A., Barbot B., Szyf M., Luthar S.S., and Grigorenko E.L. The study of association of long-term epigenetic patterns with developmental dynamics between parenting and behavioral adjustment among high-risk children and adolescents. Child Development. 2016. 87(1): 98–110. http://dx.doi.org/10.1111/cdev.12485

Naumova O.Y., Rychkov S.Y., Odintsova V.V., Kornilov S.A., Shabalina E.V., Antsiferova D.V., Zhukova O.V., Grigorenko E.L. Aberrant DNA Methylation in Lymphocytes of Children with Neurodevelopmental Disorders. Russian Journal of Genetics. 2017. 53(11):1243–1258. https://doi.org/10.1134/S1022795417110072

Grishaeva T.M. , Kulichenko D.А. , Bogdanov Y.F. Bioinformatical analysis of Eukaryotic shugoshins revealed meiosis-specific features of vertebrate shugoshins // PeerJ. 2016. 4:e2736 Impact Factor 2.18

Abdulai, I., Krutovsky K. V. , Finkeldey R. Morphological and genetic diversity of Shea tree (Vitellaria paradoxa) in the Savannah regions of Ghana. // Genetic Resources and Crop Evolution, 2016. IF = 1.430

DOI: 10.1007/s10722-016-0434-8
http://link.springer.com/article/10.1007/s10722-016-0434-8

Koralewski, T. E., Mateos M., Krutovsky K. V. Conflicting genomic signals affecting phylogenetic inference in four species of North American pines. // AoB Plants 8: plw019, 2016. IF = 2.273 http://aobpla.oxfordjournals.org/content/8/plw019.full.pdf+html

Johnson, J.S., Gaddis K. D., Cairns D. M., Lafon C. W., Krutovsky K. V. Plant responses to global change: Next generation biogeography. // Physical Geography, 2016, 37(2): 93–119. IF = 1.010

Sadovsky, M. G., Y. A. Putintseva, V. V. Birukov, S. Novikova, K. V. Krutovsky, De novo assembly and cluster analysis of Siberian larch transcriptome and genome. // Lecture Notes in Bioinformatics. 2016, 9656: 455-464. IF = 0.800

Babushkina E. A., Vaganov E. A., Grachev A. M., Oreshkova N. V., Belokopytova L. V., Kostyakova T. V., Krutovsky K. V. The effect of individual genetic heterozygosity on general homeostasis, heterosis and resilience in Siberian larch (Larix sibirica Ledeb.) using dendrochronology and microsatellite loci genotyping. // Dendrochronologia, 2016, 38: 26-37. IF = 2.590

Zhang C., Finkeldey R., Krutovsky K. V., Genetic diversity and parentage analysis of aspen demes. // New Forests, 2016, 47(1): 143-162. IF = 1.829

Gunbin KV, Ponomarenko MP, Suslov VV, Gusev F, Fedonin GG, Rogaev EI. Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation. // Mol Neurobiol. 2017 Feb 24

Balanovsky O. Toward a consensus on SNP and STR mutation rates on the human Y-chromosome. // Hum Genet. 2017 May;136(5):575-590.

Bliznetz EA, Lalayants MR, Markova TG, Balanovsky OP, Balanovska EV, Skhalyakho RA, Pocheshkhova EA, Nikitina NV, Voronin SV, Kudryashova EK, Glotov OS, Polyakov AV. Update of the GJB2/DFNB1 mutation spectrum in Russia: a founder Ingush mutation del(GJB2-D13S175) is the most frequent among other large deletions. // J Hum Genet. 2017 Apr 13

Johnson J.S., Gaddis K.D., Cairns D.M., Konganti K., Krutovsky K.V. Landscape genomic insights into the historic migration of mountain hemlock in response to Holocene climate change // American Journal of Botany, 2017, 104 (3): 439-350.

http://www.amjbot.org/content/104/3/439.abstract

http://www.amjbot.org/content/104/3.cover-expansion

Afanasyeva MA, Putlyaeva LV, Demin DE, Kulakovskiy IV, Vorontsov IE, Fridman MV, Makeev VJ, Kuprash DV, Schwartz AM. The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region. // PLoS One. 2017 Feb 24;12(2):e0172681.

Nagle N, van Oven M, Wilcox S, van Holst Pellekaan S, Tyler-Smith C, Xue Y, Ballantyne KN, Wilcox L, Papac L, Cooke K, van Oorschot RA, McAllister P, Williams L, Kayser M, Mitchell RJ; Genographic Consortium (Balanovsly O.) Aboriginal Australian mitochondrial genome variation - an increased understanding of population antiquity and diversity. //Sci Rep. 2017; 7:43041. doi: 10.1038/srep43041. Impact Factor 5.228

Balanovsky O, Chukhryaeva M, Zaporozhchenko V, Urasin V, Zhabagin M, Hovhannisyan A, Agdzhoyan A, Dibirova K, Kuznetsova M, Koshel S, Pocheshkhova E, Alborova I, Skhalyakho R, Utevska O; Genographic Consortium., Mustafin K, Yepiskoposyan L, Tyler-Smith C, Balanovska E. Genetic differentiation between upland and lowland populations shapes the Y-chromosomal landscape of West Asia. // Hum Genet. 2017 Mar 9. doi: 10.1007/s00439-017-1770-2. [Epub ahead of print] Impact Factor 5.138

Balanovsky O, Gurianov V, Zaporozhchenko V, Balaganskaya O, Urasin V, Zhabagin M, Grugni V, Canada R, Al-Zahery N, Raveane A, Wen SQ, Yan S, Wang X, Zalloua P, Marafi A, Koshel S, Semino O, Tyler-Smith C, Balanovska E. Phylogeography of human Y-chromosome haplogroup Q3-L275 from an academic/citizen science collaboration. // BMC Evol Biol. 2017; 17(Suppl 1):18. doi: 10.1186/s12862-016-0870-2. Impact Factor 3.407

Nagle N, Ballantyne KN, van Oven M, Tyler-Smith C, Xue Y, Wilcox S, Wilcox L, Turkalov R, van Oorschot RA, van Holst Pellekaan S, Schurr TG, McAllister P, Williams L, Kayser M, Mitchell RJ; Genographic Consortium (Balanovsly O.) Mitochondrial DNA diversity of present-day Aboriginal Australians and implications for human evolution in Oceania. J Hum Genet. 2017; 62(3):343-353. doi: 10.1038/jhg.2016.147. Impact Factor 2.487

Nikitski AV, Rogounovitch TI, Bychkov A, Takahashi M, Yoshiura KI, Mitsutake N, Kawaguchi T, Matsuse M, Drozd VM, Demidchik Y, Nishihara E, Hirokawa M, Miyauchi A, Rubanovich AV, Matsuda F, Yamashita S, Saenko VA. Genotype Analyses in the Japanese and Belarusian Populations Reveal Independent Effects of rs965513 and rs1867277 but Do Not Support the Role of FOXE1 Polyalanine Tract Length in Conferring Risk for Papillary Thyroid Carcinoma. Thyroid. 2017; 27(2):224-235. doi: 10.1089/thy.2015.0541. Impact Factor 4.493

Butovskaya P. R., Lazebny O. E., Sukhodolskaya E. M., Vasiliev V. A., Dronova D. A., Fedenok J. N., Rosa A., Peletskaya E., Ryskov A.P. & Butovskaya, M. L. Polymorphisms of two loci at the oxytocin receptor gene in populations of Africa, Asia and South Europe. BMC genetics, 2016, 17(1), 1. DOI: 10.1186/s12863-015-0323-8 IF 2,489

Lu M, Krutovsky KV, Nelson CD, Koralewski TE, Byram TD, Loopstra CA. Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.). BMC Genomics. 2016 Sep 13;17(1):730 Impact Factor 3.867

Grigorenko EL, Kornilov SA, Naumova OY. Epigenetic regulation of cognition: A circumscribed review of the field. Dev Psychopathol. 2016; 28(4pt2):1285-1304. Impact Factor 2.01

Savitskaya E, Lopatina A, Medvedeva S, Kapustin M, Shmakov S, Tikhonov A, Artamonova II, Logacheva M, Severinov K. Dynamics of Escherichia coli type I-E CRISPR spacers over 42 000 years. Mol Ecol. 2016 Dec 20. doi: 10.1111/mec.13961 Impact Factor: 5.947

Moskalev A, Anisimov V, Aliper A, Artemov A, Asadullah K, Belsky D, Baranova A, de Grey A, Dixit VD, Debonneuil E, Dobrovolskaya E, Fedichev P, Fedintsev A, Fraifeld V, Franceschi C, Freer R, Fülöp T, Feige J, Gems D, Gladyshev V, Gorbunova V, Irincheeva I, Jager S, Jazwinski SM, Kaeberlein M, Kennedy B, Khaltourina D, Kovalchuk I, Kovalchuk O, Kozin S, Kulminski A, Lashmanova E, Lezhnina K, Liu GH, Longo V, Mamoshina P, Maslov A, Pedro de Magalhaes J, Mitchell J, Mitnitski A, Nikolsky Y, Ozerov I, Pasyukova E, Peregudova D, Popov V, Proshkina E, Putin E, Rogaev E, Rogina B, Schastnaya J, Seluanov A, Shaposhnikov M, Simm A, Skulachev V, Skulachev M, Solovev I, Spindler S, Stefanova N, Suh Y, Swick A, Tower J, Gudkov AV, Vijg J, Voronkov A, West M, Wagner W, Yashin A, Zemskaya N, Zhumadilov Z, Zhavoronkov A. A review of the biomedical innovations for healthy longevity. Aging (Albany NY). 2017 Jan 29;9(1):7-25. doi: 10.18632/aging.101163. 2015 . Impact Factor 3.979

Ignatieva EV, Afonnikov DA, Saik OV, Rogaev EI, Kolchanov NA. A compendium of human genes regulating feeding behavior and body weight, its functional characterization and identification of GWAS genes involved in brain-specific PPI network. // BMC Genet. 2016 ; 17(Suppl 3):158. doi: 10.1186/s12863-016-0466-2.

Zolotarenko A., E. Chekalin, A. Mesentsev, L. Kiseleva, E. Gribanova, R. Mehta, A. Baranova, T.V. Tatarinova, E.S. Piruzian, S. Bruskin. Integrated computational approach to the analysis of RNA-seq data reveals new transcriptional regulators of psoriasis. Experimental & Molecular Medicine (2016) 48 (11), e268; doi:10.1038/emm.2016.97

Pogorelko GV, Reem NT, Young ZT, Chambers L, Zabotina OA. Post-synthetic defucosylation of AGP by Aspergillus nidulans α-1,2-fucosidase expressed in Arabidopsis apoplast induces compensatory upregulation of α-1,2-fucosyltransferases. Plos One (2016).

Reem NT, Pogorelko G, Lionetti V, Chambers L, Held MA, Bellincampi D and Zabotina OA. Decreased polysaccharide feruloylation compromises plant cell wall integrity and increases susceptibility to mecrotrophic fungal pathogens. Front. Plant Sci (2016) Brouchkov A, Griva G, Fursova O, Fursova N, Ignatov S, Pogorelko GV*. Is the ancient permafrost bacteria able to keep DNA stable? Journal of Genetics April (2016).

Pogorelko GV, Kambakam S, Nolan T, Foudree A, Zabotina OA, Roderme SR. Impaired chloroplast bogenesis in immutans, an Arabidopsis variegation mutant, modifies developmental programming, cell wall composition and resistance to Pseudomonas syringae. Plos One (2016) 11(4)

Pogorelko GV, Juvale P, Rutter W, Hewezi T, Hussey R, Davis E, Mitchum M, Baum T. A cyst nematode effector binds to diverse plant proteins, increases nematode susceptibility and affects root morphology. Molecular Plant Pathology (Feb 2016) DOI: 10.1111/mpp.12330

Goryacheva I., . Blekhman A., Andrianov B., Zakharov I. Heritable bacterial endosymbionts in native and invasive populations of Harmonia axyridis // Biological Invasions. 2016. DOI 10.1007/s10530-016-1298-8. IF 2.855

Tsuda Y., Chen J., Stocks M., Källman T., Sønstebø J.H., Parducci L., Semerikov V., Sperisen C., Politov D., Ronkainen T., Väliranta M., Vendramin G.G., Tollefsrud M.M., Lascoux M. The extent and meaning of hybridization and introgression between Siberian spruce (Picea obovata) and Norway spruce (Picea abies): cryptic refugia as stepping stones to the west? // Molecular Ecology. 2016. V. 25. N12. P. 2773-2789 http://dx.doi.org/10.1111/mec.13654 IF 6.01

Shaikevich E., Vinogradova E., Boatour A., Almeida P. Genetic diversity of Culex pipiens mosquitoes in distinct populations from Europe. Contribution of Cx. quinquefasciatus in Mediterranean populations //Parasites & Vectors, (2016) 9:47. DOI 10.1186/s13071-016-1333-8, IF 3.43

Shaikevich EV, Karan LS, Fyodorova MV (2016) Comparative analysis of the circadian rhythm genes period and timelessin Culex pipiens Linnaeus, 1758 (Diptera, Culicidae). Comparative Cytogenetics 10(4): 483-504.doi: 10.3897/CompCytogen.v10i4.7582 IF 1.519

Pagani L., Daniel John Lawson D.J., Jagoda E, O.Balanovsky,... Metspalu M. Genomic analyses inform on migration events during the peopling of Eurasia. Nature, 2016. Published online 21 September 2016
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Clusters of alpha satellite on human chromosome 21 are dispersed far onto the short arm and lack ancient layers.

Ziccardi W, Zhao C, Shepelev V, Uralsky L, Alexandrov I, Andreeva T,Rogaev E, Bun C, Miller E, Putonti C, Doering J.

Chromosome Res. 2016 Sep;24(3):421-36. IF 2.590

Human Y Chromosome Haplogroup N: A Non-trivial Time-Resolved Phylogeography that Cuts across Language Families.

Ilumäe AM, Reidla M, Chukhryaeva M, Järve M, Post H, Karmin M, Saag L, Agdzhoyan A, Kushniarevich A, Litvinov S, Ekomasova N, Tambets K, Metspalu E, Khusainova R, Yunusbayev B, Khusnutdinova EK, Osipova LP, Fedorova S, Utevska O, Koshel S, Balanovska E, Behar DM, BalanovskyO, Kivisild T, Underhill PA, Villems R, Rootsi S.

Am J Hum Genet. 2016 Jul 7;99(1):163-73. IF 10.794

Hybrids between chum Oncorhynchus keta and pink Oncorhynchus gorbuscha salmon: age, growth and morphology and effects on salmon production

Zhivotovsky L. A., TochilinaT.G., Shaikhaev E. G., Pogodin V. P., Malinina T. V., Gharrett A. J.

Journal of Fish Biology (2016) IF 1.246

New native South American Y chromosome lineages.

Jota MS, Lacerda DR, Sandoval JR, Vieira PP, Ohasi D, Santos-Júnior JE, Acosta O, Cuellar C, Revollo S, Paz-Y-Miño C, Fujita R, Vallejo GA, Schurr TG, Tarazona-Santos EM, Pena SDj, Ayub Q, Tyler-Smith C, Santos FR; Genographic Consortium (Balanovsky O).

J Hum Genet. 2016 Jul;61(7):593-603. IF 2.487

Antiquity and diversity of aboriginal Australian Y-chromosomes.

Nagle N, Ballantyne KN, van Oven M, Tyler-Smith C, Xue Y, Taylor D, Wilcox S, Wilcox L, Turkalov R, van Oorschot RA, McAllister P, Williams L, Kayser M, Mitchell RJ; Genographic Consortium (Balanovsky O).

Am J Phys Anthropol. 2016 Mar;159(3):367-81.

Genetic Diversity in the Lesser Antilles and Its Implications for the Settlement of the Caribbean Basin.

Benn Torres J, Vilar MG, Torres GA, Gaieski JB, Bharath Hernandez R, Browne ZE, Stevenson M, Walters W, Schurr TG; Genographic Consortium (Balanovsky O).

PLoS One. 2015 Oct 8;10(10):e0139192. IF 3.057

Toward high-resolution population genomics using archaeological samples.

Morozova I, Flegontov P, Mikheyev AS, Bruskin S, Asgharian H, Ponomarenko P, Klyuchnikov V, ArunKumar G, Prokhortchouk E, Gankin Y,Rogaev E, Nikolsky Y, Baranova A, Elhaik E, Tatarinova TV.

DNA Res. 2016 Aug;23(4):295-310. IF 5.267.

Unique sex chromosome systems in Ellobius: How do male XX chromosomes recombine and undergo pachytene chromatin inactivation?

Matveevsky S, Bakloushinskaya I, Kolomiets O.
Sci Rep. 2016 Jul 18; 6:29949. IF 5.222

Manifestation of Huntington's disease pathology in human induced pluripotent stem cell-derived neurons.
Nekrasov ED, Vigont VA, Klyushnikov SA, Lebedeva OS, Vassina EM, Bogomazova AN, Chestkov IV, Semashko TA, Kiseleva E, Suldina LA, Bobrovsky PA, Zimina OA, Ryazantseva MA, Skopin AY, Illarioshkin SN, Kaznacheyeva EV, Lagarkova MA, Kiselev SL.
Mol Neurodegener. 2016 Apr 14;11:27. IF 6.510

An integrative analysis of reprogramming in human isogenic system identified a clone selection criterion.
Shutova MV, Surdina AV, Ischenko DS, Naumov VA, Bogomazova AN, Vassina EM, Alekseev DG, Lagarkova MA, Kiselev SL.
Cell Cycle. 2016 Apr 2;15(7):986-97. IF 4.57

Antiquity and diversity of aboriginal Australian Y-chromosomes.
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Am J Phys Anthropol. 2016 Mar;159(3):367-81. IF 2.402

Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians.
Britanova OV, Shugay M, Merzlyak EM, Staroverov DB, Putintseva EV, Turchaninova MA, Mamedov IZ, Pogorelyy MV, Bolotin DA, Izraelson M, Davydov AN, Egorov ES, Kasatskaya SA, Rebrikov DV, Lukyanov S, Chudakov DM.
J Immunol. 2016 Jun 15;196(12):5005-13. IF 4.922

Preservation of methylated CpG dinucleotides in human CpG islands.
Panchin AY, Makeev VJ, Medvedeva YA.
Biol Direct. 2016 Mar 22;11(1):11. IF 4.658

Biological findings from the PheWAS catalog: focus on connective tissue-related disorders (pelvic floor dysfunction, abdominal hernia, varicose veins and hemorrhoids).
Salnikova LE, Khadzhieva MB, Kolobkov DS.
Hum Genet. 2016 Jul;135(7):779-95. IF 4.633

Hypermethylation of gene promoters in peripheral blood leukocytes in humans long term after radiation exposure.
Kuzmina NS, Lapteva NSh, Rubanovich AV.
Environ Res. 2016 Apr;146:10-7. IF 4.400

Whole exome sequencing links dental tumor to an autosomal-dominant mutation in ANO5 gene associated with gnathodiaphyseal dysplasia and muscle dystrophies.
Andreeva TV, Tyazhelova TV, Rykalina VN, Gusev FE, Goltsov AY, Zolotareva OI, Aliseichik MP, Borodina TA, Grigorenko AP, Reshetov DA, Ginter EK, Amelina SS, Zinchenko RA, Rogaev EI.
Sci Rep. 2016 May 24;6:26440. IF 5.578

microRNA-34a-Mediated Down-Regulation of the Microglial-Enriched Triggering Receptor and Phagocytosis-Sensor TREM2 in Age-Related Macular Degeneration.
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PLoS One. 2016 Mar 7;11(3):e0150211 IF 3.234

The evolution of Homo sapiens denisova and Homo sapiens neanderthalensis miRNA targeting genes in the prenatal and postnatal brain.
Gunbin KV, Afonnikov DA, Kolchanov NA, Derevianko AP, Rogaev EI.
BMC Genomics. 2015;16 Suppl 13:S4. IF 3.986

Synthesis and antimycobacterial activity of N-(2-aminopurin-6-yl) and N-(purin-6-yl) amino acids and dipeptides.
Krasnov VP, Vigorov AY, Musiyak VV, Nizova IA, Gruzdev DA, Matveeva TV, Levit GL, Kravchenko MA, Skornyakov SN, Bekker OB, Danilenko VN, Charushin VN.
Bioorg Med Chem Lett. 2016 Jun 1;26(11):2645-8. IF 2.420

Helen E. Roy, Peter M. J. Brown, Tim Adriaens, Nick Berkvens, Isabel Borges, Susana Clusella-Trullas, Richard F. Comont, Patrick De Clercq, Rene Eschen , Arnaud Estoup, Edward W. Evans, Benoit Facon, Mary M. Gardiner, Artur Gil, Audrey A. Grez, Thomas Guillemaud, Danny Haelewaters, Annette Herz, Alois Honek, Andy G. Howe, Cang Hui, William D. Hutchison, Marc Kenis, Robert L. Koch, Jan Kulfan, Lori Lawson Handley, Eric Lombaert, Antoon Loomans, John Losey, Alexander O. Lukashuk, Dirk Maes, Alexandra Magro, Katie M. Murray, Gilles San Martin, Zdenka Martinkova, Ingrid A. Minnaar, Oldřich Nedved, Marina J. Orlova-Bienkowskaja, Naoya Osawa, Wolfgang Rabitsch, Hans Peter Ravn, Gabriele Rondoni, Steph L. Rorke, Sergey K. Ryndevich, May-Guri Saethre, John J. Sloggett, Antonio Onofre Soares, Riaan Stals, Matthew C. Tinsley, Axel Vandereycken, Paul van Wielink, Sandra Viglášová, Peter Zach, Ilya A. Zakharov, Tania Zaviezo, Zihua Zhao. The harlequin ladybird, Harmonia axyridis: global perspectives on invasion history and ecology. Biol Invasions (2016) 18:997–1044. Impact Factor; 2.586.

Genomic evidence for the Pleistocene and recent population history of Native Americans. Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, Cornejo OE, Moreno-Mayar JV, Korneliussen TS, Pierre T, Rasmussen M, Campos PF, Damgaard Pde B, Allentoft ME, Lindo J, Metspalu E, Rodríguez-Varela R, Mansilla J, Henrickson C, Seguin-Orlando A, Malmström H, Stafford T Jr, Shringarpure SS, Moreno-Estrada A, Karmin M, Tambets K, Bergström A, Xue Y, Warmuth V, Friend AD, Singarayer J, Valdes P, Balloux F, Leboreiro I, Vera JL, Rangel-Villalobos H, Pettener D, Luiselli D, Davis LG, Heyer E, Zollikofer CP, Ponce de León MS, Smith CI, Grimes V, Pike KA, Deal M, Fuller BT, Arriaza B, Standen V, Luz MF, Ricaut F, Guidon N, Osipova L, Voevoda MI, Posukh OL, Balanovsky O, Lavryashina M, Bogunov Y, Khusnutdinova E, Gubina M, Balanovska E, Fedorova S, Litvinov S, Malyarchuk B, Derenko M, Mosher MJ, Archer D, Cybulski J, Petzelt B, Mitchell J, Worl R, Norman PJ, Parham P, Kemp BM, Kivisild T, Tyler-Smith C, Sandhu MS, Crawford M, Villems R, Smith DG, Waters MR, Goebel T, Johnson JR, Malhi RS, Jakobsson M, Meltzer DJ, Manica A, Durbin R, Bustamante CD, Song YS, Nielsen R, Willerslev E. // Science. 2015 Aug 21;349(6250):aab3884.

Genetic Heritage of the Balto-Slavic Speaking Populations: A Synthesis of Autosomal, Mitochondrial and Y-Chromosomal Data. Kushniarevich A, Utevska O, Chuhryaeva M, Agdzhoyan A, Dibirova K, Uktveryte I, Möls M, Mulahasanovic L, Pshenichnov A, Frolova S, Shanko A, Metspalu E, Reidla M, Tambets K, Tamm E, Koshel S, Zaporozhchenko V, Atramentova L, Kučinskas V, Davydenko O, Goncharova O, Evseeva I, Churnosov M, Pocheshchova E, Yunusbayev B, Khusnutdinova E, Marjanović D, Rudan P, Rootsi S, Yankovsky N, Endicott P, Kassian A, Dybo A; Genographic Consortium, Tyler-Smith C, Balanovska E, Metspalu M, Kivisild T, Villems R, Balanovsky O. // PLoS One. 2015 Sep 2;10(9):e0135820

Genome-wide signatures of male-mediated migration shaping the Indian gene pool. ArunKumar G, Tatarinova TV, Duty J, Rollo D, Syama A, Arun VS, Kavitha VJ, Triska P, Greenspan B, Wells RS, Pitchappan R; Genographic Consortium. // J Hum Genet. 2015 May 21. doi: 10.1038/jhg.2015.51.

The genetic legacy of the expansion of Turkic-speaking nomads across Eurasia. Yunusbayev B, Metspalu M, Metspalu E, Valeev A, Litvinov S, Valiev R, Akhmetova V, Balanovska E, Balanovsky O, Turdikulova S, Dalimova D, Nymadawa P, Bahmanimehr A, Sahakyan H, Tambets K, Fedorova S, Barashkov N, Khidiyatova I, Mihailov E, Khusainova R, Damba L, Derenko M, Malyarchuk B, Osipova L, Voevoda M, Yepiskoposyan L, Kivisild T, Khusnutdinova E, Villems R. // PLoS Genet. 2015 Apr 21;11(4):e1005068. doi: 10.1371/journal.pgen.1005068. eCollection 2015 Apr.

Deep phylogenetic analysis of haplogroup G1 provides estimates of SNP and STR mutation rates on the human Y-chromosome and reveals migrations of Iranic speakers. Balanovsky O, Zhabagin M, Agdzhoyan A, Chukhryaeva M, Zaporozhchenko V, Utevska O, Highnam G, Sabitov Z, Greenspan E, Dibirova K, Skhalyakho R, Kuznetsova M, Koshel S, Yusupov Y, Nymadawa P, Zhumadilov Z, Pocheshkhova E, Haber M, A Zalloua P, Yepiskoposyan L, Dybo A, Tyler-Smith C, Balanovska E. // PLoS One. 2015 Apr 7;10(4):e0122968.

A recent bottleneck of Y chromosome diversity coincides with a global change in culture. Karmin M, Saag L, Vicente M, Wilson Sayres MA, Järve M, Talas UG, Rootsi S, Ilumäe AM, Mägi R, Mitt M, Pagani L, Puurand T, Faltyskova Z, Clemente F, Cardona A, Metspalu E, Sahakyan H, Yunusbayev B, Hudjashov G, DeGiorgio M, Loogväli EL, Eichstaedt C, Eelmets M, Chaubey G, Tambets K, Litvinov S, Mormina M, Xue Y, Ayub Q, Zoraqi G, Korneliussen TS, Akhatova F, Lachance J, Tishkoff S, Momynaliev K, Ricaut FX, Kusuma P, Razafindrazaka H, Pierron D, Cox MP, Sultana GN, Willerslev R, Muller C, Westaway M, Lambert D, Skaro V, Kovačevic L, Turdikulova S, Dalimova D, Khusainova R, Trofimova N, Akhmetova V, Khidiyatova I, Lichman DV, Isakova J, Pocheshkhova E, Sabitov Z, Barashkov NA, Nymadawa P, Mihailov E, Seng JW, Evseeva I, Migliano AB, Abdullah S, Andriadze G, Primorac D, Atramentova L, Utevska O, Yepiskoposyan L, Marjanovic D, Kushniarevich A, Behar DM, Gilissen C, Vissers L, Veltman JA, Balanovska E, Derenko M, Malyarchuk B, Metspalu A, Fedorova S, Eriksson A, Manica A, Mendez FL, Karafet TM, Veeramah KR, Bradman N, Hammer MF, Osipova LP, Balanovsky O, Khusnutdinova EK, Johnsen K, Remm M, Thomas MG, Tyler-Smith C, Underhill PA, Willerslev E, Nielsen R, Metspalu M, Villems R, Kivisild T. // Genome Res. 2015 Apr;25(4):459-66.

Diacylglyceryltrimethylhomoserine content and gene expression changes triggered by phosphate deprivation in the mycelium of the basidiomycete Flammulina velutipes. Senik SV, Maloshenok LG, Kotlova ER, Shavarda AL, Moiseenko KV, Bruskin SA, Koroleva OV, Psurtseva NV. // Phytochemistry. 2015 Sep;117:34-42.

Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal. Papatsenko D, Darr H, Kulakovskiy IV, Waghray A, Makeev VJ, MacArthur BD, Lemischka IR. // Stem Cell Reports. 2015 Aug 11;5(2):207-20.

Phenomenon of individual difference in human monocyte activation. Orekhov AN, Nikiforov NG, Elizova NV, Ivanova EA, Makeev VJ. // Exp Mol Pathol. 2015 Aug;99(1):151-4.

Protasova MS, Grigorenko AP, Tyazhelova TV, Andreeva TV, Reshetov DA, Gusev FE, Laptenko AE, Kuznetsova IL, Goltsov AY, Klyushnikov SA, Illarioshkin SN, Rogaev EI. Whole-genome sequencing identifies a novel ABCB7 gene mutation for X-linked congenital cerebellar ataxia in a large family of Mongolian ancestry. // Eur J Hum Genet. 2015 Aug 5. doi: 10.1038/ejhg.2015.139.

Shepelev VA, Uralsky LI, Alexandrov AA, Yurov YB, Rogaev EI, Alexandrov IA. Annotation of suprachromosomal families reveals uncommon types of alpha satellite organization in pericentromeric regions of hg38 human genome assembly. // Genom Data. 2015 Sep 1;5:139-146.

Bai G, Cheung I, Shulha HP, Coelho JE, Li P, Dong X, Jakovcevski M, Wang Y, Grigorenko A, Jiang Y, Hoss A, Patel K, Zheng M, Rogaev E, Myers RH, Weng Z, Akbarian S, Chen JF. Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains. // Hum Mol Genet. 2015 Mar 1;24(5):1441-56.

Rykalina VN, Shadrin AA, Amstislavskiy VS, Rogaev EI, Lehrach H, Borodina TA. Exome sequencing from nanogram amounts of starting DNA: comparing three approaches. // vPLoS One. 2014 Jul 3;9(7):e101154.

Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes. Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN. Microb Ecol. 2015 Apr 17. [Epub ahead of print]

Discovery of molecular markers to discriminate corneal endothelial cells in the human body. Yoshihara M, Ohmiya H, Hara S, Kawasaki S; FANTOM consortium (Makeev V et al.), Hayashizaki Y, Itoh M, Kawaji H, Tsujikawa M, Nishida K. PLoS One. 2015 Mar 25;10(3):e0117581.

The statistical geometry of transcriptome divergence in cell-type evolution and cancer. Liang C; FANTOM Consortium (Makeev V et al.) , Forrest AR, Wagner GP. // Nat Commun. 2015 Jan 14;6:6066.

Effects of genetic drift in a small population of Atlantic cod (Gadus morhua kildinensis Derjugin) landlocked in a meromictic lake: genetic variation and conservation measures. Zhivotovsky, L. A., Teterina, A. A., Mukhina, N. V., Stroganov, A. N., Rubtsova, G. A., & Afanasiev, K. I. // Conservation Genetics, 1-10. DOI: 10.1007/s10592-015-0774-5

Efficiency of the inbreeding coefficient f and other estimators in detecting null alleles, as revealed by empirical data of locus oke3 across 65 populations of chum salmon Oncorhynchus keta. Zhivotovsky LA, Kordicheva SY, Shaikhaev EG, Rubtsova GA, Afanasiev KI, Shitova MV, Fuller SA, Shaikhaev GO, Gharrett AJ.// J Fish Biol. 2015 Jan;86(1):402-8

Functional analysis of the type II toxin-antitoxin systems of the MazEF and RelBE families in Bifidobacterium longum subsp. infantis ATCC 15697. Averina O, Alekseeva M, Shkoporov A, Danilenko V. // Anaerobe. 2015 Jul 23;35(Pt B):59-67.

Draft Genome Sequences of Two Pyrazinamide-Resistant Clinical Isolates, Mycobacterium tuberculosis 13-4152 and 13-2459. Maslov DA, Shur KV, Bekker OB, Zakharevich NV, Zaichikova MV, Klimina KM, Smirnova TG, Zhang Y, Chernousova LN, Danilenko VN. // Genome Announc. 2015 Jul 2;3(4). pii: e00758-15.

Draft Genome Sequences of Bifidobacterium angulatum GT102 and Bifidobacterium adolescentis 150: Focusing on the Genes Potentially Involved in the Gut-Brain Axis. Dyachkova MS, Klimina KM, Kovtun AS, Zakharevich NV, Nezametdinova VZ, Averina OV, Danilenko VN. // Genome Announc. 2015 Jul 2;3(4). pii: e00709-15.

Resistance to pyrazinamide in Russian Mycobacterium tuberculosis isolates: pncA sequencing versus Bactec MGIT 960. Maslov DA, Zaĭchikova MV, Chernousova LN, Shur KV, Bekker OB, Smirnova TG, Larionova EE, Andreevskaya SN, Zhang Y, Danilenko VN. // Tuberculosis (Edinb). 2015 Sep;95(5):608-12.

Draft Genome Sequence of Mycobacterium tuberculosis Strain E186hv of Beijing B0/W Lineage with Reduced Virulence. Shur KV, Klimina KM, Zakharevich NV, Maslov DA, Bekker OB, Zaychikova MV, Kamaev EY, Kravchenko MA, Skornyakov SN, Zhang Y, Danilenko VN. // Genome Announc. 2015 May 7;3(3). pii: e00403-15.

Draft Genome Sequences of Lactobacillus plantarum Strain 90sk and Lactobacillus brevis Strain 15f: Focusing on Neurotransmitter Genes. Yunes RA, Klimina KM, Emelyanov KV, Zakharevich NV, Poluektova EU, Danilenko VN. // Genome Announc. 2015 Apr 16;3(2). pii: e00261-15.

Expression of the toxin-antitoxin genes yefMLrh , yoeBLrh in human Lactobacillus rhamnosus isolates. Krügel H, Klimina KM, Mrotzek G, Tretyakov A, Schöfl G, Saluz HP, Brantl S, Poluektova EU, Danilenko VN. // J Basic Microbiol. 2015 Aug;55(8):982-91.

FoF1-ATP synthase of Streptomyces fradiae ATCC 19609: structural, biochemical, and functional characterization. Alekseeva MG, Mironcheva TA, Mavletova DA, Elizarov SM, Zakharevich NV, Danilenko VN. // Biochemistry (Mosc). 2015 Mar;80(3):296-309

The association of PLA2G2A single nucleotide polymorphisms with type IIa secretory phospholipase A2 level but not its activity in patients with stable coronary heart disease. Shuvalova YA, Khasanova ZB, Kaminnaya VI, Samoilova EV, Korotaeva AA, Rubanovich AV, Kaminnyi AI. // Gene. 2015 Jun 10;564(1):29-34. IF 2.082

Verification of the Chromosome Region 9q21 Association with Pelvic Organ Prolapse Using RegulomeDB Annotations. Khadzhieva MB, Kolobkov DS, Kamoeva SV, Ivanova AV, Abilev SK, Salnikova LE. // Biomed Res Int. 2015;2015:837904.

Germline and somatic genetic predictors of pathological response in neoadjuvant settings of rectal and esophageal cancers: systematic review and meta-analysis. Salnikova LE, Kolobkov DS.// Pharmacogenomics J. 2015 Jun 30.

Association of the apolipoprotein E 2 allele with concurrent occurrence of endometrial hyperplasia and endometrial carcinoma. Ivanova TI, Krikunova LI, Ryabchenko NI, Mkrtchyan LS, Khorokhorina VA, Salnikova LE. // Oxid Med Cell Longev. 2015;2015:593658.

Clinical associations of host genetic variations in the genes of cytokines in critically ill patients. Belopolskaya OB, Smelaya TV, Moroz VV, Golubev AM, Salnikova LE. // Clin Exp Immunol. 2015 Jun;180(3):531-41.

Poliakov, E., Cooper, D. N., Stepchenkova, E. I., & Rogozin, I. B. (2015). Genetics in Genomic Era. Genetics research international. dx.doi.org/10.1155/2015/364960

Badaeva, E. D., Keilwagen, J., Knüpffer, H., Waßermann, L., Dedkova, O. S., Mitrofanova, O. P., ... & Kilian, B. (2015). Chromosomal Passports Provide New Insights into Diffusion of Emmer Wheat. PloS one, 10(5), e0128556.

Prepubertal Serum Concentrations of Organochlorine Pesticides and Age at Sexual Maturity in Russian Boys. Lam T, Williams PL, Lee MM, Korrick SA, Birnbaum LS, Burns JS, Sergeyev O, Revich B, Altshul LM, Patterson DG Jr, Hauser R. // Environ Health Perspect. 2015 May 22

Zhivotovsky L.A. Relationships Between Wright’s FST and FISStatistics in a Context of Wahlund Effect // J. Hered. 2015 (published online 17/04/2015) - IF 1.969

Dorokhov Yu. L. , Shindyapina A.V., Sheshukova E.V., Komarova T.V. Metabolic Methanol: Molecular Pathways and Physiological Roles // Physiological Reviews Published 1 April 2015 Vol. 95 no. 2, 603-644 - IF 35.456

Dasgupta M.G., Dharanishanthi V., Agarwal I., Krutovsky K.V.Development of genetic markers in Eucalyptus species by target enrichment and exome sequencing // PLoS One. 2015.10(1): e0116528. doi:10.1371/journal.pone.011652 (http://www.plosone.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pone.0116528&representation=PDF)

Bogomazova AN, Vassina EM, Goryachkovskaya TN, Popik VM, Sokolov AS, Kolchanov NA, Lagarkova MA, Kiselev SL, Peltek SE. No DNA damage response and negligible genome-wide transcriptional changes in human embryonic stem cells exposed to terahertz radiation. Sci Rep. 2015 Jan 13;5:7749. doi: 10.1038/srep07749

Bogomazova AN, Lagarkova MA, Panova AV, Nekrasov ED, Kiselev SL. Reactivation of Х chromosome upon reprogramming leads to changes in the replication pattern and 5hmC accumulation. Chromosoma. 2014 Mar;123(1-2):117-28

Rykalina VN, Shadrin AA, Amstislavskiy VS, Rogaev EI, Lehrach H, Borodina TA. Exome sequencing from nanogram amounts of starting DNA: comparing three approaches. PLoS One. 2014 Jul 3;9(7):e101154

Veytsman B, Wang L, Cui T, Bruskin S, Baranova A. Distance-based classifiers as potential diagnostic and prediction tools for human diseases. BMC Genomics. 2014 Dec 19;15 Suppl 12:S10.

Pogorelko GV, Mokryakova M, Fursova OV, Abdeeva I, Piruzian ES, Bruskin SA. Characterization of three Arabidopsis thaliana immunophilin genes involved in the plant defense response against Pseudomonas syringae. Gene. 2014 Mar 15;538(1):12-22.

Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. Gene. 2014 Apr 25;540(1):1-10.

Khadzhieva MB, Kamoeva SV, Chumachenko AG, Ivanova AV, Volodin IV, Vladimirov IS, Abilev SK, Salnikova LE. Fibulin-5 (FBLN5) gene polymorphism is associated with pelvic organ prolapse. Maturitas. 2014 Aug;78(4):287-92

Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN. Complete Genome Sequence of Bifidobacterium longum GT15: Unique Genes for Russian Strains. Genome Announc. 2014 Dec 18;2(6).

Bekker OB, Klimina KM, Vatlin AA, Zakharevich NV, Kasianov AS, Danilenko VN. Draft Genome Sequence of Streptomyces fradiae ATCC 19609, a Strain Highly Sensitive to Antibiotics. Genome Announc. 2014 Dec 4;2(6).

Lysenkova LN, Turchin KF, Korolev AM, Danilenko VN, Bekker OB, Dezhenkova LG, Shtil AA, Preobrazhenskaya MN. Study on retroaldol degradation products of antibiotic oligomycin A. J Antibiot (Tokyo). 2014 Feb;67(2):153-8

Knappskog S, Gansmo LB, Dibirova K, Metspalu A, Cybulski C, Peterlongo P, Aaltonen L, Vatten L, Romundstad P, Hveem K, Devilee P, Evans GD, Lin D, Van Camp G, Manolopoulos VG, Osorio A, Milani L, Ozcelik T, Zalloua P, Mouzaya F, Bliznetz E, Balanovska E, Pocheshkova E, Kučinskas V, Atramentova L, Nymadawa P, Titov K, Lavryashina M, Yusupov Y, Bogdanova N, Koshel S, Zamora J, Wedge DC, Charlesworth D, Dörk T, Balanovsky O, Lønning PE. Population distribution and ancestry of the cancer protective MDM2 SNP285 (rs117039649). Oncotarget. 2014 Sep 30;5(18):8223-34.

Krutovsky K.V., Tretyakova I.N., Oreshkova N.V., Pak M.E., Kvitko O.V., Vaganov E.A. Somaclonal variation of haploid in vitro tissue culture obtained from Siberian larch (Larix sibiricaLedeb.) megagametophytes for whole genome de novosequencing // In Vitro Cellular and Developmental Biology – Plant. 2014. V. 50. № 5. P. 655-664.

Koralewski, T.E., Brooks, J.E. and K.V. Krutovsky. Molecular evolution of drought tolerance and wood strength related candidate genes in loblolly pine (Pinus taeda L.) // Silvae Genetica. 2014. V. 63. № 1-2. P. 59-66.

Zhivotovsky L.A., S.Yu. Kordicheva, E.G. Shaikhaev, G.A. Rubtsova, K.I. Afanasiev, M.V. Shitova, S.A. Fuller, G.O. Shaikhaev, A.J. Gharrett. 2014. Efficiency of the inbreeding coefficient f and other estimators in detecting null alleles, as revealed by empirical data of locus Oke3 across 65 populations of chum salmon, Oncorhynchus keta. Journal of Fish Biology (doi: 10.1111/jfb.12568) - IF 1.734

Zhivotovsky L.A., A.A. Yurchenko, V.D. Nikitin, S.N. Safronov, M.V. Shitova, S.F. Zolotukhin, S.S. Makeev, S. Weiss, P.S. Rand, A.Yu. Semenchenko. 2014. Eco-geographic units, population hierarchy, and a two-level conservation strategy with reference to a critically endangered salmonid, Sakhalin taimen Parahucho perryi. Conservation Genetics (doi: 10.1007/s10592-014-0670-4) - IF 1.846

Pavlova G.V., Vergun A.A., Rybalkina E.Yu., Butovskaya P.R. , Ryskov A.P. Identification of Structural DNA Variations in Human Cell Cultures after Long-Term Passage.// Cell Cycle. 2015, Vol.14, Issue 1, doi. org/10.4161/15384101.2014.974427. IF 5.0

Slavokhotova AA, Rogozhin EA, Musolyamov AK, Andreev YA, Oparin PB, Berkut AA, Vassilevski AA, Egorov TA, Grishin EV, Odintsova TI. Novel antifungal α-hairpinin peptide from Stellaria media seeds: structure, biosynthesis, gene structure and evolution. Plant Mol Biol. 2014. V. 84(1-2). P. 189-202. IF 4.072

Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Structure of the yellow sac spider Cheiracanthium punctorium genes provides clues to evolution of insecticidal two-domain knottin toxins. Insect Mol Biol. 2014. V. 23(4). P. 527-38. IF 2.976

Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Genes and evolution of two-domain toxins from lynx spider venom. FEBS Lett. 2014. V. 588(5). P. 740-5. IF 3.341

Berkut AA, Usmanova DR, Peigneur S, Oparin PB, Mineev KS, Odintsova TI, Tytgat J, Arseniev AS, Grishin EV, Vassilevski AA. Structural Similarity between Defense Peptide from Wheat and Scorpion Neurotoxin Permits Rational Functional Design. J Biol Chem. 2014. V. 289(20). P. 14331-40. IF 4.6

Slavokhotova AA, Naumann TA, Price NP, Rogozhin EA, Andreev YA, Vassilevski AA, Odintsova TI. Novel mode of action in plant defense peptides: hevein-like antimicrobial peptides from wheat inhibit fungal metalloproteases. FEBS J. 2014. V. 281(20). P. 4754-64. IF 3.986

Zvyagin I.V. , Pogorelyy M.V., Ivanova M. E. , Komech M. E. , Shugay M. , Bolotin D.A. , Shelenkov A.A., Kurnosov A.A. , Staroverov D.B. , Chudakov D.M. , Lebedev Y.B., Mamedov I.Z. Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing. PNAS, 2014, 111(16):5980-5, doi: 10.1073/pnas.1319389111 - IF 9.809 (лаб. функциональной геномики)

Ignatov KB, Barsova EV, Fradkov AF, Blagodatskikh KA, Kramarova TV, Kramarov VM. A strong strand displacement activity of thermostable DNA polymerase markedly improves the results of DNA amplification. Biotechniques. 2014 Aug 1;57(2):81-7. IF - 2.754 (лаб. анализа генома)

Статья поставлена журналом Biotechniques на первое место в обзоре достижений в области ПЦР за 2014 год BioTechniques - PCR: 2014 Year in Review

Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, Nordenfelt S, Li H, de Filippo C, Prüfer K, Sawyer S, Posth C, Haak W, Hallgren F, Fornander E, Rohland N, Delsate D, Francken M, Guinet JM, Wahl J, Ayodo G, Babiker HA, Bailliet G, Balanovska E, Balanovsky O, Barrantes R, Bedoya G, Ben-Ami H, Bene J, Berrada F, Bravi CM, Brisighelli F, Busby GB, Cali F, Churnosov M, Cole DE, Corach D, Damba L, van Driem G, Dryomov S, Dugoujon JM, Fedorova SA, Gallego Romero I, Gubina M, Hammer M, Henn BM, Hervig T, Hodoglugil U, Jha AR, Karachanak-Yankova S, Khusainova R, Khusnutdinova E, Kittles R, Kivisild T, Klitz W, Kučinskas V, Kushniarevich A, Laredj L, Litvinov S, Loukidis T, Mahley RW, Melegh B, Metspalu E, Molina J, Mountain J, Näkkäläjärvi K, Nesheva D, Nyambo T, Osipova L, Parik J, Platonov F, Posukh O, Romano V, Rothhammer F, Rudan I, Ruizbakiev R, Sahakyan H, Sajantila A, Salas A, Starikovskaya EB, Tarekegn A, Toncheva D, Turdikulova S, Uktveryte I, Utevska O, Vasquez R, Villena M, Voevoda M, Winkler CA, Yepiskoposyan L, Zalloua P, Zemunik T, Cooper A, Capelli C, Thomas MG, Ruiz-Linares A, Tishkoff SA, Singh L, Thangaraj K, Villems R, Comas D, Sukernik R, Metspalu M, Meyer M, Eichler EE, Burger J, Slatkin M, Pääbo S, Kelso J, Reich D, Krause J. Ancient human genomes suggest three ancestral populations for present-day Europeans. // Nature. 2014 Sep 18;513(7518):409-13. doi: 10.1038/nature13673. – IF F 42.351

Association between alcohol and cardiovascular disease: Mendelian randomisation analysis based on individual participant data.

Holmes MV, Dale CE, Zuccolo L, Silverwood RJ, Guo Y, Ye Z, Prieto-Merino D, Dehghan A, Trompet S, Wong A, Cavadino A, Drogan D, Padmanabhan S, Li S, Yesupriya A, Leusink M, Sundstrom J, Hubacek JA, Pikhart H, Swerdlow DI, Panayiotou AG, Borinskaya SA, Finan C, Shah S, Kuchenbaecker KB, Shah T, Engmann J, Folkersen L, Eriksson P, Ricceri F, Melander O, Sacerdote C, Gamble DM, Rayaprolu S, Ross OA, McLachlan S, Vikhireva O, Sluijs I, Scott RA, Adamkova V, Flicker L, Bockxmeer FM, Power C, Marques-Vidal P, Meade T, Marmot MG, Ferro JM, Paulos-Pinheiro S, Humphries SE, Talmud PJ, Mateo Leach I, Verweij N, Linneberg A, Skaaby T, Doevendans PA, Cramer MJ, Harst Pv, Klungel OH, Dowling NF, Dominiczak AF, Kumari M, Nicolaides AN, Weikert C, Boeing H, Ebrahim S, Gaunt TR, Price JF, Lannfelt L, Peasey A, Kubinova R, Pajak A, Malyutina S, Voevoda MI, Tamosiunas A, Maitland-van der Zee AH, Norman PE, Hankey GJ, Bergmann MM, Hofman A, Franco OH, Cooper J, Palmen J, Spiering W, Jong PA, Kuh D, Hardy R, Uitterlinden AG, Ikram MA, Ford I, Hyppönen E, Almeida OP, Wareham NJ, Khaw KT, Hamsten A, Husemoen LL, Tjønneland A, Tolstrup JS, Rimm E, Beulens JW, Verschuren WM, Onland-Moret NC, Hofker MH, Wannamethee SG, Whincup PH, Morris R, Vicente AM, Watkins H, Farrall M, Jukema JW, Meschia J, Cupples LA, Sharp SJ, Fornage M, Kooperberg C, LaCroix AZ, Dai JY, Lanktree MB, Siscovick DS, Jorgenson E, Spring B, Coresh J, Li YR, Buxbaum SG, Schreiner PJ, Ellison RC, Tsai MY, Patel SR, Redline S, Johnson AD, Hoogeveen RC, Hakonarson H, Rotter JI, Boerwinkle E, Bakker PI, Kivimaki M, Asselbergs FW, Sattar N, Lawlor DA, Whittaker J, Davey Smith G, Mukamal K, Psaty BM, Wilson JG, Lange LA, Hamidovic A, Hingorani AD, Nordestgaard BG, Bobak M, Leon DA, Langenberg C, Palmer TM, Reiner AP, Keating BJ, Dudbridge F, Casas JP; InterAct Consortium. Association between alcohol and cardiovascular disease: Mendelian randomisation analysis based on individual participant data // BMJ. 2014 Jul 10;349:g4164. doi: 10.1136/bmj.g4164. Free Full Text – IF 16.378
Подробнее

Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB. The ctenophore genome and the evolutionary origins of neural systems. // Nature. 2014 Jun 5;510(7503):109-14. – IF 42.351 ПРЕСС-РЕЛИЗ

Geographic population structure analysis of worldwide human populations infers their biogeographical origins.

Elhaik E, Tatarinova T, Chebotarev D, Piras IS, Maria Calò C, De Montis A, Atzori M, Marini M, Tofanelli S, Francalacci P, Pagani L, Tyler-Smith C, Xue Y, Cucca F, Schurr TG, Gaieski JB, Melendez C, Vilar MG, Owings AC, Gómez R, Fujita R, Santos FR, Comas D, Balanovsky O, Balanovska E, Zalloua P, Soodyall H, Pitchappan R, Ganeshprasad A, Hammer M, Matisoo-Smith L, Wells RS; Genographic Consortium. // Nat Commun. 2014 Apr 29;5:3513. doi: 10.1038/ncomms4513. - IF 10.742

FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Lassmann T, Itoh M, Summers KM, Suzuki H, Daub CO, Kawai J, Heutink P, Hide W, Freeman TC, Lenhard B, Bajic VB, Taylor MS, Makeev VJ, Sandelin A, Hume DA, Carninci P, Hayashizaki Y. A promoter-level mammalian expression atlas. // Nature. 2014 Mar 27;507(7493):462-70. doi: 10.1038/nature13182. – IF 42.351 ПРЕСС-РЕЛИЗ

Salnikova L.E. Clinicopathologic Characteristics of Brain Tumors Are Associated with the Presence and Patterns of TP53 Mutations: Evidence from the IARC TP53 Database. // Neuromolecular Med. 2014 Jan 31. [Epub ahead of print] DOI: 10.1007/s12017-014-8290-1 – IF 4.492

Salnikova LE, Smelaya TV, Vesnina IN, Golubev AM, Moroz VV. Genetic Susceptibility to Nosocomial Pneumonia, Acute Respiratory Distress Syndrome and Poor Outcome in Patients at Risk of Critical Illness. // Inflammation 2014; 37(2):295-305. DOI: 10.1007/s10753-013-9740-x – IF 2.457

Khadzhieva MB, Lutcenko NN, Volodin IV, Morozova KV, Salnikova LE. Association of Oxidative Stress Related Genes with Idiopathic Recurrent Miscarriage. // Free Radical Research. 2014;48(5):534-541. DOI:10.3109/10715762.2014.891735 – IF 3.279

The FANTOM Consortium and the RIKEN PMI and CLST (DGT), в том числе сотрудники ИОГен Иван Кулаковский, Юлия Медведева, Александр Фаворов, Артем Касьянов, Илья Воронцов и Всеволод Макеев: A promoter-level mammalian expression atlas // Nature 507, 462–470 (27 March 2014) -- IF F 42.351

Lomakin YA, Zakharova MY, Stepanov AV, Dronina MA, Smirnov IV, Bobik TV, Pyrkov AY, Tikunova NV, Sharanova SN, Boitsov VM, Vyazmin SY, Kabilov MR, Tupikin AE, Krasnov AN, Bykova NA, Medvedeva YA, Fridman MV, Favorov AV, Ponomarenko NA, Dubina MV, Boyko AN, Vlassov VV, Belogurov Jr AA, Gabibov AG. Heavy-light chain interrelations of MS-associated immunoglobulins probed by deep sequencing and rational variation.// Mol Immunol. 2014 Feb 14. pii: S0161-5890(14)00023-6. doi: 10.1016/j.molimm.2014.01.013 -- IF 2.645

Medvedeva YA, Khamis AM, Kulakovskiy IV, Ba-Alawi W, Bhuyan MS, Kawaji H, Lassmann T, Harbers M, Forrest AR, Bajic VB; FANTOM consortium. Effects of cytosine methylation on transcription factor binding sites. // BMC Genomics. 2014 Mar 26;15(1):119. doi: 10.1186/1471-2164-15-119. -- IF 4.40

Levitsky VG, Kulakovskiy IV, Ershov NI, Oschepkov DY, Makeev VJ, Hodgman TC, Merkulova TI. Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data. BMC Genomics. 2014 Jan 29;15(1):80. -- IF 4.40

Underhill PA, Poznik GD, Rootsi S, Järve M, Lin AA, Wang J, Passarelli B, Kanbar J, Myres NM, King RJ, Di Cristofaro J, Sahakyan H, Behar DM, Kushniarevich A, Sarac J, Saric T, Rudan P, Pathak AK, Chaubey G, Grugni V, Semino O, Yepiskoposyan L, Bahmanimehr A, Farjadian S, Balanovsky O, Khusnutdinova EK, Herrera RJ, Chiaroni J, Bustamante CD, Quake SR, Kivisild T, Villems R. The phylogenetic and geographic structure of Y-chromosome haplogroup R1a. // Eur J Hum Genet. 2014 Mar 26. doi: 10.1038/ejhg.2014.50 -- IF 4.319

Gogleva AA, Gelfand MS, Artamonova II. Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs. // BMC Genomics. 2014 Mar 17;15:202. IF - 4.041

Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. // Gene. 2014 ;540(1):1-10. doi: 10.1016/j.gene.2014.01.068 -- IF 2.341

Nezametdinova V.Z., Zakharevich N.V., Alekseeva M.G., Mavletova D.A., Averina O.A., Danilenko V.N. Identification and characterization of the eukaryote-like serine/threonine protein kinases in Bifidobacterium. Archives of Microbiology. 2014, V. 196, Issue 2, pp 125-136. -- IF 1.905

Thompson PM, Stein JL, Medland SE, Hibar DP, Vasquez AA, Renteria ME, Toro R, Jahanshad N, Schumann G, Franke B,Wright MJ, Martin NG, Agartz I, Alda M, Alhusaini S, Almasy L, Almeida J, Alpert K, Andreasen NC, Andreassen OA, Apostolova LG, Appel K, Armstrong NJ, Aribisala B, Bastin ME, Bauer M, Bearden CE, Bergmann O, Binder EB, Blangero J, Bockholt HJ,Bøen E, Bois C, Boomsma DI, Booth T, Bowman IJ, Bralten J, Brouwer RM, Brunner HG, Brohawn DG, Buckner RL, Buitelaar J,Bulayeva K. et al. (2014). The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging and Behavior, Online First : 1-30. -- IF 2.667

Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Genes and evolution of two-domain toxins from lynx spider venom. FEBS Lett. 2014 Jan 23. pii: S0014-5793(14)00044-1. doi: 10.1016/j.febslet.2014.01.018. -- 3.582

Slavokhotova AA, Rogozhin EA, Musolyamov AK, Andreev YA, Oparin PB, Berkut AA, Vassilevski AA, Egorov TA, Grishin EV, Odintsova TI. Novel antifungal α-hairpinin peptide from Stellaria media seeds: structure, biosynthesis, gene structure and evolution. Plant Mol Biol. 2014 Jan; 84(1-2):189-202. doi: 10.1007/s11103-013-0127-z. -- IF 3.518

Evsyukov A., Ivanov D. Seection variability for Arg48His in Alcohol Dehydrogenase ADH1B among Asian populations. Human Biology. 2013. Vol. 85. Issue 4. P. 569-578. -- IF 1.522

Der Sarkissian C, Brotherton P, Balanovsky O, Templeton JE, Llamas B, Soubrier J, Moiseyev V, Khartanovich V, Cooper A, Haak W; Genographic Consortium. Mitochondrial genome sequencing in Mesolithic North East Europe Unearths a new sub-clade within the broadly distributed human haplogroup C1. // PLoS One. 2014 Feb 4;9(2):e87612. -- IF 3.730

Clarke AC, Prost S, Stanton JA, White WT, Kaplan ME, Matisoo-Smith EA; Genographic Consortium (Balanovsky OP). From cheek swabs to consensus sequences: an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes. // BMC Genomics. 2014 Jan 25;15:68 -- IF 4.40

2013

Raghavan M., Skoglund P., Graf K., Metspalu M., Albrechtsen A., Moltke I., Rasmussen S., Stafford_Jr T., Orlando L., Metspalu E., Karmin M., Tambets K., Rootsi S., Mägi R., Campos P., Balanovska E., Balanovsky O., Khusnutdinova E., Litvinov S., Osipova L., Fedorova S., Voevoda M., DeGiorgio M., Sicheritz-Ponten T., Brunak S., Demeshchenko S., Kivisild T., Villems R., Nielsen R., Jakobsson M., Willerslev E.	Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans.	Nature 2014 Jan 2;505(7481):87-91. doi: 10.1038/nature12736. Epub 2013 Nov 20	Imact Factor 38.597
Brandt G., Haak W., Adler C.J., Roth C., Szécsényi-Nagy A., Karimnia S., Möller-Rieker S., Meller H., Ganslmeier R., Friederich S., Dresely V., Nicklisch N., Pickrell J.K., Sirocko F., Reich D., Cooper A., Alt K.W., The Genographic Consortium (...Balanovsky O. )	Ancient DNA reveals key stages in the formation of central European mitochondrial genetic diversity. The oldest known genome of a modern human solves long-standing puzzles about the New World's genetic heritage. Подробности здесь	Science. 2013. Oct 11. 342(6155). P. 257-261	31.027
Davydov II, Wohlgemuth I, Artamonova II, Urlaub H, Tonevitsky AG, Rodnina MV.	Evolution of the protein stoichiometry in the L12 stalk of bacterial and organellar ribosomes.	Nat Commun. 2013; 4:1387. doi: 10.1038/ncomms2373.	10.015
Brotherton P, Haak W, Templeton J, Brandt G, Soubrier J, Jane Adler C, Richards SM, Sarkissian CD, Ganslmeier R, Friederich S, Dresely V, van Oven M, Kenyon R, Van der Hoek MB, Korlach J, Luong K, Ho SY, Quintana-Murci L, Behar DM, Meller H, Alt KW, Cooper A; Genographic Consortium, Balanovska E, Balanovsky O. et al.,	Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans.	Nat Commun. 2013; 4:1764.	10.015
Costa MD, Pereira JB, Pala M, Fernandes V, Olivieri A, Achilli A, Perego UA, Rychkov S, Naumova O, Hatina J, Woodward SR, Eng KK, Macaulay V, Carr M, Soares P, Pereira L, Richards MB.	A substantial prehistoric European ancestry amongst Ashkenazi maternal lineages.	Nat Commun. 2013 Oct 8;4:2543	10.015
Houston I, Peter CJ, Mitchell A, Straubhaar J, Rogaev E, Akbarian S.	Epigenetics in the human brain.	Neuropsychopharmacology. 2013 Jan; 38(1):183-9	8.678
Der Sarkissian C, Balanovsky et al., Genographic Consortium.	Ancient DNA reveals prehistoric gene-flow from Siberia in the complex human population history of North East Europe.	PLoS Genet. 2013; 9(2):e1003296.	8.517 .
Kulakovskiy IV, Medvedeva YA, Schaefer U, Kasianov AS, Vorontsov IE, Bajic VB, Makeev VJ.	HOCOMOCO: a comprehensive collection of human transcription factor binding sites models.	Nucleic Acids Res. 2013 Jan; 41(Database issue):D195-202.	8.278
Leon DA, Shkolnikov VM, Borinskaya S, Casas JP, Evans A, Gil A, Kee F, Kiryanov N, McKee M, O'Doherty MG, Ploubidis GB, Polikina O, Vassiliev M, Blankenberg S, Watkins H.	Hazardous alcohol consumption is associated with increased levels of B-type natriuretic peptide: evidence from two population-based studies.	Eur J Epidemiol. 2013 May; 28(5):393-404.	5.118
Makeev VJ.	Predictive biology using systems and integrative analysis and methods.	J Biomol Struct Dyn. 2013; 31(1):1-3.	4.986
Permina EA, Medvedeva YA, Baeck PM, Hegde SR, Mande SC, Makeev VJ.	Identification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets.	J Biomol Struct Dyn. 2013; 31(1):115-24.	4.986
Naumova OY, Lee M, Rychkov SY, Vlasova NV, Grigorenko EL.	Gene expression in the human brain: the current state of the study of specificity and spatiotemporal dynamics.	Child Dev. 2013 Jan-Feb; 84(1):76-88. Review.	4.915
Elhaik E, Greenspan E, Staats S, Krahn T, Tyler-Smith C, Xue Y, Tofanelli S, Francalacci P, Cucca F, Pagani L, Jin L, Li H, Schurr TG, Greenspan B, Spencer Wells R; Genographic Consortium (Balanovsky O)	The GenoChip: a new tool for genetic anthropology.	Genome Biol Evol. 2013; 5(5):1021-31.	4.759
McDonald H, Borinskaya S, Kiryanov N, Gil A, Helander A, Leon DA.	Comparative performance of biomarkers of alcohol consumption in a population sample of working-aged men in Russia: the Izhevsk Family Study.	Addiction. 2013 Sep; 108(9):1579-89.	4.746
Rębała K, Martínez-Cruz B, Tönjes A, Kovacs P, Stumvoll M, Lindner I, Büttner A, Wichmann HE, Siváková D, Soták M, Quintana-Murci L, Szczerkowska Z, Comas D; Genographic Consortium (Balanovsky O)	Contemporary paternal genetic landscape of Polish and German populations: from early medieval Slavic expansion to post-World War II resettlements.	Eur J Hum Genet. 2013;21(4):415-22	4.319
Utkina LL, Andreev YA, Rogozhin EA, Korostyleva TV, Slavokhotova AA, Oparin PB, Vassilevski AA, Grishin EV, Egorov TA, Odintsova TI.	Genes encoding 4-Cys antimicrobial peptides in wheat Triticum kiharae Dorof. et Migush.: multimodular structural organization, instraspecific variability, distribution and role in defence.	FEBS J. 2013 Aug; 280(15):3594-608.	4.25
Bykova NA, Favorov AV, Mironov AA.	Hidden Markov models for evolution and comparative genomics analysis.	PLoS One. 2013 Jun 7; 8(6):e65012.	3.730
Fantin YS, Neverov AD, Favorov AV, Alvarez-Figueroa MV, Braslavskaya SI, Gordukova MA, Karandashova IV, Kuleshov KV, Myznikova AI, Polishchuk MS, Reshetov DA, Voiciehovskaya YA, Mironov AA, Chulanov VP.	Base-calling algorithm with vocabulary (BCV) method for analyzing population sequencing chromatograms.	PLoS One. 2013; 8(1):e54835.	3.730
Boattini A, Martinez-Cruz B, Sarno S, Harmant C, Useli A, Sanz P, Yang-Yao D, Manry J, Ciani G, Luiselli D, Quintana-Murci L, Comas D, Pettener D; Genographic Consortium. (Balanovsky O)	Uniparental markers in Italy reveal a sex-biased genetic structure and different historical strata.	PLoS One. 2013 May 29; 8(5):e65441.	3.730
Badro DA, Douaihy B, Haber M, Youhanna SC, Salloum A, Ghassibe-Sabbagh M, Johnsrud B, Khazen G, Matisoo-Smith E, Soria-Hernanz DF, Wells RS, Tyler-Smith C, Platt DE, Zalloua PA; Genographic Consortium. (Balanovsky O)	Y-chromosome and mtDNA genetics reveal significant contrasts in affinities of modern Middle Eastern populations with European and African populations.	PLoS One. 2013; 8(1):e54616.	3.730
Bogomazova AN, Lagarkova MA, Panova AV, Nekrasov ED, Kiselev SL.	Reactivation of Х chromosome upon reprogramming leads to changes in the replication pattern and 5hmC accumulation.	Chromosoma. 2013 Aug 28.	3.340
Dumas E, Atyame CM, Milesi P, Fonseca DM, Shaikevich EV, Unal S, Makoundou P, Weill M, Duron O.	Population structure of Wolbachia and cytoplasmic introgression in a complex of mosquito species.	BMC Evol Biol. 2013 Sep 3;13:181	3.29
Gordienko EN, Kazanov MD, Gelfand MS.	Evolution of Pan-Genomes of Escherichia coli, Shigella spp., and Salmonella enterica.	J Bacteriol. 2013 Jun;195(12):2786-92	3.194
Lysenkova LN, Turchin KF, Korolev AM, Dezhenkova LG, Bekker OB, Shtil AA, Danilenko VN, Preobrazhenskaya MN.	Synthesis and cytotoxicity of oligomycin A derivatives modified in the side chain.	Bioorg Med Chem. 2013 Jun 1;21(11):2918-24.	2.903
Butovskaya PR, Butovskaya ML, Vasilyev VA, Lazebny OE, Shibalev DV, Veselovskaya EV, Udina IG, Ryskov A.P	Мolecular-Genetic Polymorphisms of Dopamine, Serotonin and Androgenic Systems as Molecular Markers of Success in Judo Wrestling Sportsmen.	J Bioanal Biomed (2013) .S3: 005. doi:10.4172/1948-593X.S3-005.	2.880
Astafieva AA, Rogozhin EA, Andreev YA, Odintsova TI, Kozlov SA, Grishin EV, Egorov TA.	A novel cysteine-rich antifungal peptide ToAMP4 from Taraxacum officinale Wigg. flowers.	Plant Physiol Biochem. 2013 Sep; 70:93-9	2.775
Minashkin MM, Salnikova LE, Lomonosov KM, Korobko IV, Tatarenko AO	Possible contribution of GSTP1 and other xenobiotic metabolizing genes to vitiligo susceptibility.	Arch Dermatol Res. 2013 Apr;305(3):233-9	2.708
Thompson TM, Sharfi D, Lee M, Yrigollen CM, Naumova OY, Grigorenko EL.	Comparison of whole-genome DNA methylation patterns in whole blood, saliva, and lymphoblastoid cell lines.	Behav Genet. 2013 Mar;43(2):168-76	2.606
Salnikova LE, Belopolskaya OB, Zelinskaya NI, Rubanovich AV.	The potential effect of gender in CYP1A1 and GSTM1 genotype-specific associations with pediatric brain tumor.	Tumour Biol. 2013 Oct 34(5):2709-19	2.518
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Salnikova LE, Smelaya TV, Moroz VV, Golubev AM, Rubanovich AV.	Functional polymorphisms in the CYP1A1, ACE, and IL-6 genes contribute to susceptibility to community-acquired and nosocomial pneumonia.	Int J Infect Dis. 2013 Jun; 17(6):e433-42.	2.498
Bourmenskaya O, Shubina E, Trofimov D, Rebrikov D, Sabdulaeva E, Nepsha O, Bozhenko V, Rogovskaya S, Sukhikh G.	Host gene expression profiling of cervical smear is eligible for cancer risk evaluation.	J Clin Pathol. 2013 Apr; 66(4):282-5	2.439
Chhatre, V., Byram, T. Neale D.B., Wegrzyn J.L., Krutovsky K.V.	Genetic structure and association mapping of adaptive and selective traits in the East Texas loblolly pine (Pinus taeda L.) breeding populations.	Tree Genetics and Genomes 2013 9(5): 1161-1178	2.397
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Klimina KM, Kjasova DK, Poluektova EU, Krügel H, Leuschner Y, Saluz HP, Danilenko VN.	Identification and characterization of toxin-antitoxin systems in strains of Lactobacillus rhamnosus isolated from humans.	Anaerobe. 2013 Aug;22:82-9	2.022
Kulakovskiy IV, Makeev VJ.	DNA Sequence Motif: A Jack of All Trades for ChIP-Seq Data.	Adv Protein Chem Struct Biol. 2013; 91:135-71.	1.83
Tayeh A, Estoup A, Hufbauer RA, Ravigne V, Goryacheva I, Zakharov IA, Lombaert E, Facon B.	Investigating the genetic load of an emblematic invasive species: the case of the invasive harlequin ladybird Harmonia axyridis.	Ecol Evol. 2013 Apr; 3(4):864-71.	1.184
Vorontsov IE, Kulakovskiy IV, Makeev VJ.	Jaccard index based similarity measure to compare transcription factor binding site models.	Algorithms Mol Biol. 2013 Sep 30;8(1):23.	1.61
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Mukha DV, Pasyukova EG, Kapelinskaya TV, Kagramanova AS.	Endonuclease domain of the Drosophila melanogaster R2 non-LTR retrotransposon and related retroelements: a new model for transposition.	Front Genet. 2013 Apr 26; 4:63.	The first impact factor will be available in 2013
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