25.11.2016
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Список публикаций Института за 2015-2016 гг. в  Google Scholar

 

Goryacheva I., . Blekhman A., Andrianov B., Zakharov I. Heritable bacterial endosymbionts in native and invasive populations of Harmonia axyridis // Biological Invasions. 2016. DOI 10.1007/s10530-016-1298-8. IF 2.855

 

Tsuda Y., Chen J., Stocks M., Källman T., Sønstebø J.H., Parducci L., Semerikov V., Sperisen C., Politov D., Ronkainen T., Väliranta M., Vendramin G.G., Tollefsrud M.M., Lascoux M.  The extent and meaning of hybridization and introgression between Siberian spruce (Picea obovata) and Norway spruce (Picea abies): cryptic refugia as stepping stones to the west? // Molecular Ecology. 2016. V. 25. N12. P. 2773-2789 http://dx.doi.org/10.1111/mec.13654 IF 6.01

 

Shaikevich E., Vinogradova E., Boatour A., Almeida P. Genetic diversity of Culex pipiens mosquitoes in distinct populations from Europe. Contribution of Cx. quinquefasciatus in Mediterranean populations //Parasites & Vectors, (2016) 9:47. DOI 10.1186/s13071-016-1333-8, IF 3.43

 

Shaikevich EV, Karan LS, Fyodorova MV (2016) Comparative analysis of the circadian rhythm genes period and timelessin Culex pipiens Linnaeus, 1758 (Diptera, Culicidae). Comparative Cytogenetics 10(4): 483-504.doi: 10.3897/CompCytogen.v10i4.7582 IF 1.519

 

Pagani L., Daniel John Lawson D.J.,  Jagoda E, O.Balanovsky,... Metspalu M. Genomic analyses inform on migration events during the peopling of Eurasia. Nature, 2016. Published online 21 September 2016
www.nature.com/nature/journal/vaop/ncurrent/full/nature19792.html

Mallick S., Heng Li H.,  Lipson M.,... O.Balanovsky, ... Reich D. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature, 2016. Published online 21 September 2016
www.nature.com/nature/journal/vaop/ncurrent/full/nature18964.html

 

Clusters of alpha satellite on human chromosome 21 are dispersed far onto the short arm and lack ancient layers.

Ziccardi W, Zhao C, Shepelev V, Uralsky L, Alexandrov I, Andreeva T,Rogaev E, Bun C, Miller E, Putonti C, Doering J.

Chromosome Res. 2016 Sep;24(3):421-36. IF 2.590

 

Human Y Chromosome Haplogroup N: A Non-trivial Time-Resolved Phylogeography that Cuts across Language Families.

Ilumäe AM, Reidla M, Chukhryaeva M, Järve M, Post H, Karmin M, Saag L, Agdzhoyan A, Kushniarevich A, Litvinov S, Ekomasova N, Tambets K, Metspalu E, Khusainova R, Yunusbayev B, Khusnutdinova EK, Osipova LP, Fedorova S, Utevska O, Koshel S, Balanovska E, Behar DM, BalanovskyO, Kivisild T, Underhill PA, Villems R, Rootsi S.

Am J Hum Genet. 2016 Jul 7;99(1):163-73. IF 10.794

 

Hybrids between chum Oncorhynchus keta and pink Oncorhynchus gorbuscha salmon: age, growth and morphology and effects on salmon production

Zhivotovsky L. A., TochilinaT.G., Shaikhaev E. G., Pogodin V. P.,  Malinina T. V.,  Gharrett A. J.

Journal of Fish Biology (2016) IF 1.246

New native South American Y chromosome lineages.

Jota MS, Lacerda DR, Sandoval JR, Vieira PP, Ohasi D, Santos-Júnior JE, Acosta O, Cuellar C, Revollo S, Paz-Y-Miño C, Fujita R, Vallejo GA, Schurr TG, Tarazona-Santos EM, Pena SDj, Ayub Q, Tyler-Smith C, Santos FR; Genographic Consortium (Balanovsky O).

J Hum Genet. 2016 Jul;61(7):593-603. IF 2.487

 

Antiquity and diversity of aboriginal Australian Y-chromosomes.

Nagle N, Ballantyne KN, van Oven M, Tyler-Smith C, Xue Y, Taylor D, Wilcox S, Wilcox L, Turkalov R, van Oorschot RA, McAllister P, Williams L, Kayser M, Mitchell RJ; Genographic Consortium (Balanovsky O).

Am J Phys Anthropol. 2016 Mar;159(3):367-81.

 

Genetic Diversity in the Lesser Antilles and Its Implications for the Settlement of the Caribbean Basin.

Benn Torres J, Vilar MG, Torres GA, Gaieski JB, Bharath Hernandez R, Browne ZE, Stevenson M, Walters W, Schurr TG; Genographic Consortium (Balanovsky O).

PLoS One. 2015 Oct 8;10(10):e0139192.  IF 3.057

 

Toward high-resolution population genomics using archaeological samples.

Morozova I, Flegontov P, Mikheyev AS, Bruskin S, Asgharian H, Ponomarenko P, Klyuchnikov V, ArunKumar G, Prokhortchouk E, Gankin Y,Rogaev E, Nikolsky Y, Baranova A, Elhaik E, Tatarinova TV.

DNA Res. 2016 Aug;23(4):295-310. IF 5.267.

 

Unique sex chromosome systems in Ellobius: How do male XX chromosomes recombine and undergo pachytene chromatin inactivation?

Matveevsky S, Bakloushinskaya I, Kolomiets O.
Sci Rep. 2016 Jul 18; 6:29949.   IF 5.222

 

Manifestation of Huntington's disease pathology in human induced pluripotent stem cell-derived neurons.
Nekrasov ED, Vigont VA, Klyushnikov SA, Lebedeva OS, Vassina EM, Bogomazova AN, Chestkov IV, Semashko TA, Kiseleva E, Suldina LA, Bobrovsky PA, Zimina OA, Ryazantseva MA, Skopin AY, Illarioshkin SN, Kaznacheyeva EV, Lagarkova MA, Kiselev SL.
Mol Neurodegener. 2016 Apr 14;11:27.  IF 6.510

An integrative analysis of reprogramming in human isogenic system identified a clone selection criterion.
Shutova MV, Surdina AV, Ischenko DS, Naumov VA, Bogomazova AN, Vassina EM, Alekseev DG, Lagarkova MA, Kiselev SL.
Cell Cycle. 2016 Apr 2;15(7):986-97. IF 4.57

 

Antiquity and diversity of aboriginal Australian Y-chromosomes.
Nagle N, Ballantyne KN, van Oven M, Tyler-Smith C, Xue Y, Taylor D, Wilcox S, Wilcox L, Turkalov R, van Oorschot RA, McAllister P, Williams L, Kayser M, Mitchell RJ; Genographic Consortium (Balanovsky O).
Am J Phys Anthropol. 2016 Mar;159(3):367-81. IF 2.402

 

Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians.
Britanova OV, Shugay M, Merzlyak EM, Staroverov DB, Putintseva EV, Turchaninova MA, Mamedov IZ, Pogorelyy MV, Bolotin DA, Izraelson M, Davydov AN, Egorov ES, Kasatskaya SA, Rebrikov DV, Lukyanov S, Chudakov DM.
J Immunol. 2016 Jun 15;196(12):5005-13.  IF 4.922

 

Preservation of methylated CpG dinucleotides in human CpG islands.
Panchin AY, Makeev VJ, Medvedeva YA.
Biol Direct. 2016 Mar 22;11(1):11. IF 4.658

 

Biological findings from the PheWAS catalog: focus on connective tissue-related disorders (pelvic floor dysfunction, abdominal hernia, varicose veins and hemorrhoids).
Salnikova
LE, Khadzhieva MB, Kolobkov DS.
Hum Genet
. 2016 Jul;135(7):779-95.  IF 4.633

 

Hypermethylation of gene promoters in peripheral blood leukocytes in humans long term after radiation exposure.
Kuzmina NS, Lapteva NSh, Rubanovich AV.
Environ Res. 2016 Apr;146:10-7.  IF 4.400

 

Whole exome sequencing links dental tumor to an autosomal-dominant mutation in ANO5 gene associated with gnathodiaphyseal dysplasia and muscle dystrophies.
Andreeva TV, Tyazhelova TV, Rykalina VN, Gusev FE, Goltsov AY, Zolotareva OI, Aliseichik MP, Borodina TA, Grigorenko AP, Reshetov DA, Ginter EK, Amelina SS, Zinchenko RA, Rogaev EI.
Sci Rep. 2016 May 24;6:26440. IF 5.578

 

microRNA-34a-Mediated Down-Regulation of the Microglial-Enriched Triggering Receptor and Phagocytosis-Sensor TREM2 in Age-Related Macular Degeneration.
Bhattacharjee S, Zhao Y, Dua P, Rogaev EI, Lukiw WJ.
PLoS One. 2016 Mar 7;11(3):e0150211  IF 3.234

 

The evolution of Homo sapiens denisova and Homo sapiens neanderthalensis miRNA targeting genes in the prenatal and postnatal brain.
Gunbin KV, Afonnikov DA, Kolchanov NA, Derevianko AP, Rogaev EI.
BMC Genomics. 2015;16 Suppl 13:S4.  IF 3.986

 

Synthesis and antimycobacterial activity of N-(2-aminopurin-6-yl) and N-(purin-6-yl) amino acids and dipeptides.
Krasnov VP, Vigorov AY, Musiyak VV, Nizova IA, Gruzdev DA, Matveeva TV, Levit GL, Kravchenko MA, Skornyakov SN, Bekker OB, Danilenko VN, Charushin VN.
Bioorg Med Chem Lett. 2016 Jun 1;26(11):2645-8.  IF 2.420

 

Helen E. Roy, Peter M. J. Brown, Tim Adriaens, Nick Berkvens, Isabel Borges, Susana Clusella-Trullas, Richard F. Comont, Patrick De Clercq, Rene Eschen ,  Arnaud Estoup,  Edward W. Evans,  Benoit Facon,  Mary M. Gardiner,  Artur Gil,  Audrey A. Grez,  Thomas Guillemaud,  Danny Haelewaters,  Annette Herz,  Alois Honek,  Andy G. Howe,  Cang Hui,  William D. Hutchison,  Marc Kenis,  Robert L. Koch,  Jan Kulfan,  Lori Lawson Handley,  Eric Lombaert,  Antoon Loomans,  John Losey,  Alexander O. Lukashuk,  Dirk Maes,  Alexandra Magro,  Katie M. Murray,  Gilles San Martin,  Zdenka Martinkova,  Ingrid A. Minnaar,  Oldřich Nedved,  Marina J. Orlova-Bienkowskaja,  Naoya Osawa,  Wolfgang Rabitsch,  Hans Peter Ravn,  Gabriele Rondoni,  Steph L. Rorke,  Sergey K. Ryndevich,  May-Guri Saethre,  John J. Sloggett,  Antonio Onofre Soares,  Riaan Stals,  Matthew C. Tinsley,  Axel Vandereycken,  Paul van Wielink,  Sandra Viglášová,  Peter Zach, Ilya A. Zakharov, Tania Zaviezo,  Zihua Zhao. The harlequin ladybird, Harmonia axyridis: global perspectives on invasion history and ecology. Biol Invasions (2016) 18:997–1044. Impact Factor; 2.586.

 

Genomic evidence for the Pleistocene and recent population history of Native Americans. Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, Cornejo OE, Moreno-Mayar JV, Korneliussen TS, Pierre T, Rasmussen M, Campos PF, Damgaard Pde B, Allentoft ME, Lindo J, Metspalu E, Rodríguez-Varela R, Mansilla J, Henrickson C, Seguin-Orlando A, Malmström H, Stafford T Jr, Shringarpure SS, Moreno-Estrada A, Karmin M, Tambets K, Bergström A, Xue Y, Warmuth V, Friend AD, Singarayer J, Valdes P, Balloux F, Leboreiro I, Vera JL, Rangel-Villalobos H, Pettener D, Luiselli D, Davis LG, Heyer E, Zollikofer CP, Ponce de León MS, Smith CI, Grimes V, Pike KA, Deal M, Fuller BT, Arriaza B, Standen V, Luz MF, Ricaut F, Guidon N, Osipova L, Voevoda MI, Posukh OL, Balanovsky O, Lavryashina M, Bogunov Y, Khusnutdinova E, Gubina M, Balanovska E, Fedorova S, Litvinov S, Malyarchuk B, Derenko M, Mosher MJ, Archer D, Cybulski J, Petzelt B, Mitchell J, Worl R, Norman PJ, Parham P, Kemp BM, Kivisild T, Tyler-Smith C, Sandhu MS, Crawford M, Villems R, Smith DG, Waters MR, Goebel T, Johnson JR, Malhi RS, Jakobsson M, Meltzer DJ, Manica A, Durbin R, Bustamante CD, Song YS, Nielsen R, Willerslev E. //  Science. 2015 Aug 21;349(6250):aab3884.

 

Genetic Heritage of the Balto-Slavic Speaking Populations: A Synthesis of Autosomal, Mitochondrial and Y-Chromosomal Data. Kushniarevich A, Utevska O, Chuhryaeva M, Agdzhoyan A, Dibirova K, Uktveryte I, Möls M, Mulahasanovic L, Pshenichnov A, Frolova S, Shanko A, Metspalu E, Reidla M, Tambets K, Tamm E, Koshel S, Zaporozhchenko V, Atramentova L, Kučinskas V, Davydenko O, Goncharova O, Evseeva I, Churnosov M, Pocheshchova E, Yunusbayev B, Khusnutdinova E, Marjanović D, Rudan P, Rootsi S, Yankovsky N, Endicott P, Kassian A, Dybo A; Genographic Consortium, Tyler-Smith C, Balanovska E, Metspalu M, Kivisild T, Villems R, Balanovsky O. // PLoS One. 2015 Sep 2;10(9):e0135820

 

Genome-wide signatures of male-mediated migration shaping the Indian gene pool. ArunKumar G, Tatarinova TV, Duty J, Rollo D, Syama A, Arun VS, Kavitha VJ, Triska P, Greenspan B, Wells RS, Pitchappan R; Genographic Consortium. // J Hum Genet. 2015 May 21. doi: 10.1038/jhg.2015.51.

 

The genetic legacy of the expansion of Turkic-speaking nomads across Eurasia. Yunusbayev B, Metspalu M, Metspalu E, Valeev A, Litvinov S, Valiev R, Akhmetova V, Balanovska E, Balanovsky O, Turdikulova S, Dalimova D, Nymadawa P, Bahmanimehr A, Sahakyan H, Tambets K, Fedorova S, Barashkov N, Khidiyatova I, Mihailov E, Khusainova R, Damba L, Derenko M, Malyarchuk B, Osipova L, Voevoda M, Yepiskoposyan L, Kivisild T, Khusnutdinova E, Villems R. // PLoS Genet. 2015 Apr 21;11(4):e1005068. doi: 10.1371/journal.pgen.1005068. eCollection 2015 Apr.

 

Deep phylogenetic analysis of haplogroup G1 provides estimates of SNP and STR mutation rates on the human Y-chromosome and reveals migrations of Iranic speakers. Balanovsky O, Zhabagin M, Agdzhoyan A, Chukhryaeva M, Zaporozhchenko V, Utevska O, Highnam G, Sabitov Z, Greenspan E, Dibirova K, Skhalyakho R, Kuznetsova M, Koshel S, Yusupov Y, Nymadawa P, Zhumadilov Z, Pocheshkhova E, Haber M, A Zalloua P, Yepiskoposyan L, Dybo A, Tyler-Smith C, Balanovska E. //  PLoS One. 2015 Apr 7;10(4):e0122968.

 

A recent bottleneck of Y chromosome diversity coincides with a global change in culture. Karmin M, Saag L, Vicente M, Wilson Sayres MA, Järve M, Talas UG, Rootsi S, Ilumäe AM, Mägi R, Mitt M, Pagani L, Puurand T, Faltyskova Z, Clemente F, Cardona A, Metspalu E, Sahakyan H, Yunusbayev B, Hudjashov G, DeGiorgio M, Loogväli EL, Eichstaedt C, Eelmets M, Chaubey G, Tambets K, Litvinov S, Mormina M, Xue Y, Ayub Q, Zoraqi G, Korneliussen TS, Akhatova F, Lachance J, Tishkoff S, Momynaliev K, Ricaut FX, Kusuma P, Razafindrazaka H, Pierron D, Cox MP, Sultana GN, Willerslev R, Muller C, Westaway M, Lambert D, Skaro V, Kovačevic L, Turdikulova S, Dalimova D, Khusainova R, Trofimova N, Akhmetova V, Khidiyatova I, Lichman DV, Isakova J, Pocheshkhova E, Sabitov Z, Barashkov NA, Nymadawa P, Mihailov E, Seng JW, Evseeva I, Migliano AB, Abdullah S, Andriadze G, Primorac D, Atramentova L, Utevska O, Yepiskoposyan L, Marjanovic D, Kushniarevich A, Behar DM, Gilissen C, Vissers L, Veltman JA, Balanovska E, Derenko M, Malyarchuk B, Metspalu A, Fedorova S, Eriksson A, Manica A, Mendez FL, Karafet TM, Veeramah KR, Bradman N, Hammer MF, Osipova LP, Balanovsky O, Khusnutdinova EK, Johnsen K, Remm M, Thomas MG, Tyler-Smith C, Underhill PA, Willerslev E, Nielsen R, Metspalu M, Villems R, Kivisild T.  //  Genome Res. 2015 Apr;25(4):459-66.

 

Diacylglyceryltrimethylhomoserine content and gene expression changes triggered by phosphate deprivation in the mycelium of the basidiomycete Flammulina velutipes. Senik SV, Maloshenok LG, Kotlova ER, Shavarda AL, Moiseenko KV, Bruskin SA, Koroleva OV, Psurtseva NV. // Phytochemistry. 2015 Sep;117:34-42.

 

Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal. Papatsenko D, Darr H, Kulakovskiy IV, Waghray A, Makeev VJ, MacArthur BD, Lemischka IR. //  Stem Cell Reports. 2015 Aug 11;5(2):207-20.

 

Phenomenon of individual difference in human monocyte activation. Orekhov AN, Nikiforov NG, Elizova NV, Ivanova EA, Makeev VJ. // Exp Mol Pathol. 2015 Aug;99(1):151-4.

 

Protasova MS, Grigorenko AP, Tyazhelova TV, Andreeva TV, Reshetov DA, Gusev FE, Laptenko AE, Kuznetsova IL, Goltsov AY, Klyushnikov SA, Illarioshkin SN, Rogaev EI. Whole-genome sequencing identifies a novel ABCB7 gene mutation for X-linked congenital cerebellar ataxia in a large family of Mongolian ancestry. // Eur J Hum Genet. 2015 Aug 5. doi: 10.1038/ejhg.2015.139.

 

Shepelev VA, Uralsky LI, Alexandrov AA, Yurov YB, Rogaev EI, Alexandrov IA.  Annotation of suprachromosomal families reveals uncommon types of alpha satellite organization in pericentromeric regions of hg38 human genome assembly. // Genom Data. 2015 Sep 1;5:139-146.

 

Bai G, Cheung I, Shulha HP, Coelho JE, Li P, Dong X, Jakovcevski M, Wang Y, Grigorenko A, Jiang Y, Hoss A, Patel K, Zheng M, Rogaev E, Myers RH, Weng Z, Akbarian S, Chen JF.  Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains. // Hum Mol Genet. 2015 Mar 1;24(5):1441-56.

 

Rykalina VN, Shadrin AA, Amstislavskiy VS, Rogaev EI, Lehrach H, Borodina TA. Exome sequencing from nanogram amounts of starting DNA: comparing three approaches. // vPLoS One. 2014 Jul 3;9(7):e101154.

 

Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes. Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN. Microb Ecol. 2015 Apr 17. [Epub ahead of print]

 

Discovery of molecular markers to discriminate corneal endothelial cells in the human body. Yoshihara M, Ohmiya H, Hara S, Kawasaki S; FANTOM consortium (Makeev V et al.), Hayashizaki Y, Itoh M, Kawaji H, Tsujikawa M, Nishida K. PLoS One. 2015 Mar 25;10(3):e0117581.

The statistical geometry of transcriptome divergence in cell-type evolution and cancer. Liang C; FANTOM Consortium (Makeev V et al.) , Forrest AR, Wagner GP. // Nat Commun. 2015 Jan 14;6:6066.

Effects of genetic drift in a small population of Atlantic cod (Gadus morhua kildinensis Derjugin) landlocked in a meromictic lake: genetic variation and conservation measures.  Zhivotovsky, L. A., Teterina, A. A., Mukhina, N. V., Stroganov, A. N., Rubtsova, G. A., & Afanasiev, K. I. // Conservation Genetics, 1-10.  DOI: 10.1007/s10592-015-0774-5

 

Efficiency of the inbreeding coefficient f and other estimators in detecting null alleles, as revealed by empirical data of locus oke3 across 65 populations of chum salmon Oncorhynchus keta. Zhivotovsky LA, Kordicheva SY, Shaikhaev EG, Rubtsova GA, Afanasiev KI, Shitova MV, Fuller SA, Shaikhaev GO, Gharrett AJ.// J Fish Biol. 2015 Jan;86(1):402-8

 

Functional analysis of the type II toxin-antitoxin systems of the MazEF and RelBE families in Bifidobacterium longum subsp. infantis ATCC 15697. Averina O, Alekseeva M, Shkoporov A, Danilenko V. // Anaerobe. 2015 Jul 23;35(Pt B):59-67.

 

Draft Genome Sequences of Two Pyrazinamide-Resistant Clinical Isolates, Mycobacterium tuberculosis 13-4152 and 13-2459. Maslov DA, Shur KV, Bekker OB, Zakharevich NV, Zaichikova MV, Klimina KM, Smirnova TG, Zhang Y, Chernousova LN, Danilenko VN. // Genome Announc. 2015 Jul 2;3(4). pii: e00758-15.

 

Draft Genome Sequences of Bifidobacterium angulatum GT102 and Bifidobacterium adolescentis 150: Focusing on the Genes Potentially Involved in the Gut-Brain Axis. Dyachkova MS, Klimina KM, Kovtun AS, Zakharevich NV, Nezametdinova VZ, Averina OV, Danilenko VN. //  Genome Announc. 2015 Jul 2;3(4). pii: e00709-15.

 

Resistance to pyrazinamide in Russian Mycobacterium tuberculosis isolates: pncA sequencing versus Bactec MGIT 960. Maslov DA, Zaĭchikova MV, Chernousova LN, Shur KV, Bekker OB, Smirnova TG, Larionova EE, Andreevskaya SN, Zhang Y, Danilenko VN. // Tuberculosis (Edinb). 2015 Sep;95(5):608-12.

 

Draft Genome Sequence of Mycobacterium tuberculosis Strain E186hv of Beijing B0/W Lineage with Reduced Virulence. Shur KV, Klimina KM, Zakharevich NV, Maslov DA, Bekker OB, Zaychikova MV, Kamaev EY, Kravchenko MA, Skornyakov SN, Zhang Y, Danilenko VN. // Genome Announc. 2015 May 7;3(3). pii: e00403-15.

 

Draft Genome Sequences of Lactobacillus plantarum Strain 90sk and Lactobacillus brevis Strain 15f: Focusing on Neurotransmitter Genes. Yunes RA, Klimina KM, Emelyanov KV, Zakharevich NV, Poluektova EU, Danilenko VN. // Genome Announc. 2015 Apr 16;3(2). pii: e00261-15.

 

Expression of the toxin-antitoxin genes yefMLrh , yoeBLrh in human Lactobacillus rhamnosus isolates. Krügel H, Klimina KM, Mrotzek G, Tretyakov A, Schöfl G, Saluz HP, Brantl S, Poluektova EU, Danilenko VN. // J Basic Microbiol. 2015 Aug;55(8):982-91.

 

FoF1-ATP synthase of Streptomyces fradiae ATCC 19609: structural, biochemical, and functional characterization. Alekseeva MG, Mironcheva TA, Mavletova DA, Elizarov SM, Zakharevich NV, Danilenko VN. // Biochemistry (Mosc). 2015 Mar;80(3):296-309

 

The association of PLA2G2A single nucleotide polymorphisms with type IIa secretory phospholipase A2 level but not its activity in patients with stable coronary heart disease. Shuvalova YA, Khasanova ZB, Kaminnaya VI, Samoilova EV, Korotaeva AA, Rubanovich AV, Kaminnyi AI. //  Gene. 2015 Jun 10;564(1):29-34.  IF 2.082

 

Verification of the Chromosome Region 9q21 Association with Pelvic Organ Prolapse Using RegulomeDB Annotations. Khadzhieva MB, Kolobkov DS, Kamoeva SV, Ivanova AV, Abilev SK, Salnikova LE. // Biomed Res Int. 2015;2015:837904.

 

Germline and somatic genetic predictors of pathological response in neoadjuvant settings of rectal and esophageal cancers: systematic review and meta-analysis. Salnikova LE, Kolobkov DS.// Pharmacogenomics J. 2015 Jun 30.

 

Association of the apolipoprotein E 2 allele with concurrent occurrence of endometrial hyperplasia and endometrial carcinoma. Ivanova TI, Krikunova LI, Ryabchenko NI, Mkrtchyan LS, Khorokhorina VA, Salnikova LE. // Oxid Med Cell Longev. 2015;2015:593658.

 

Clinical associations of host genetic variations in the genes of cytokines in critically ill patients. Belopolskaya OB, Smelaya TV, Moroz VV, Golubev AM, Salnikova LE. // Clin Exp Immunol. 2015 Jun;180(3):531-41.

 

Poliakov, E., Cooper, D. N., Stepchenkova, E. I., & Rogozin, I. B. (2015). Genetics in Genomic Era. Genetics research international. dx.doi.org/10.1155/2015/364960

 

 

Badaeva, E. D., Keilwagen, J., Knüpffer, H., Waßermann, L., Dedkova, O. S., Mitrofanova, O. P., ... & Kilian, B. (2015). Chromosomal Passports Provide New Insights into Diffusion of Emmer Wheat. PloS one, 10(5), e0128556.

 

Prepubertal Serum Concentrations of Organochlorine Pesticides and Age at Sexual Maturity in Russian Boys. Lam T, Williams PL, Lee MM, Korrick SA, Birnbaum LS, Burns JS, Sergeyev O, Revich B, Altshul LM, Patterson DG Jr, Hauser R. // Environ Health Perspect. 2015 May 22

 

 

 

Zhivotovsky L.A. Relationships Between Wright’s FST and FISStatistics in a Context of Wahlund Effect // J. Hered. 2015 (published online 17/04/2015)   - IF 1.969


A.V., E.V.,

Dasgupta M.G., Dharanishanthi V., Agarwal I., Krutovsky K.V.Development of genetic markers in Eucalyptus species by target enrichment and exome sequencing // PLoS One. 2015.10(1): e0116528. doi:10.1371/journal.pone.011652 (http://www.plosone.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pone.0116528&representation=PDF)

 

Bogomazova AN, Vassina EM, Goryachkovskaya TN, Popik VM, Sokolov AS, Kolchanov NA, Lagarkova MA, Kiselev SL, Peltek SE. No DNA damage response and negligible genome-wide transcriptional changes in human embryonic stem cells exposed to terahertz radiation. Sci Rep. 2015  Jan 13;5:7749. doi: 10.1038/srep07749

 

Bogomazova AN, Lagarkova MA, Panova AV, Nekrasov ED, Kiselev SL. Reactivation of Х chromosome upon reprogramming leads to changes in the replication pattern and 5hmC accumulation. Chromosoma. 2014 Mar;123(1-2):117-28

 

Rykalina VN, Shadrin AA, Amstislavskiy VS, Rogaev EI, Lehrach H, Borodina TA. Exome sequencing from nanogram amounts of starting DNA: comparing three approaches. PLoS One. 2014 Jul 3;9(7):e101154

 

Bai G, Cheung I, Shulha HP, Coelho JE, Li P, Dong X, Jakovcevski M, Wang Y, Grigorenko A, Jiang Y, Hoss A, Patel K, Zheng M, Rogaev E, Myers RH, Weng Z, Akbarian S, Chen JF.  Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains. Hum Mol Genet. 2014 Dec 5. pii: ddu561.

 

Veytsman B, Wang L, Cui T, Bruskin S, Baranova A. Distance-based classifiers as potential diagnostic and prediction tools for human diseases. BMC Genomics. 2014 Dec 19;15 Suppl 12:S10.

 

Pogorelko GV, Mokryakova M, Fursova OV, Abdeeva I, Piruzian ES, Bruskin SA. Characterization of three Arabidopsis thaliana immunophilin genes involved in the plant defense response against Pseudomonas syringae. Gene. 2014 Mar 15;538(1):12-22.

 

Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. Gene. 2014 Apr 25;540(1):1-10.

 

Khadzhieva MB, Kamoeva SV, Chumachenko AG, Ivanova AV, Volodin IV, Vladimirov IS, Abilev SK, Salnikova LE. Fibulin-5 (FBLN5) gene polymorphism is associated with pelvic organ prolapse. Maturitas. 2014 Aug;78(4):287-92

 

Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN. Complete Genome Sequence of Bifidobacterium longum GT15: Unique Genes for Russian Strains. Genome Announc. 2014 Dec 18;2(6).

 

Bekker OB, Klimina KM, Vatlin AA, Zakharevich NV, Kasianov AS, Danilenko VN. Draft Genome Sequence of Streptomyces fradiae ATCC 19609, a Strain Highly Sensitive to Antibiotics. Genome Announc. 2014 Dec 4;2(6).

 

Lysenkova LN, Turchin KF, Korolev AM, Danilenko VN, Bekker OB, Dezhenkova LG, Shtil AA, Preobrazhenskaya MN.  Study on retroaldol degradation products of antibiotic oligomycin A. J Antibiot (Tokyo). 2014 Feb;67(2):153-8

 

Knappskog S, Gansmo LB, Dibirova K, Metspalu A, Cybulski C, Peterlongo P, Aaltonen L, Vatten L, Romundstad P, Hveem K, Devilee P, Evans GD, Lin D, Van Camp G, Manolopoulos VG, Osorio A, Milani L, Ozcelik T, Zalloua P, Mouzaya F, Bliznetz E, Balanovska E, Pocheshkova E, Kučinskas V, Atramentova L, Nymadawa P, Titov K, Lavryashina M, Yusupov Y, Bogdanova N, Koshel S, Zamora J, Wedge DC, Charlesworth D, Dörk T, Balanovsky O, Lønning PE. Population distribution and ancestry of the cancer protective MDM2 SNP285 (rs117039649). Oncotarget. 2014 Sep 30;5(18):8223-34.

 

Krutovsky K.V., Tretyakova I.N., Oreshkova N.V., Pak M.E., Kvitko O.V., Vaganov E.A. Somaclonal variation of haploid in vitro tissue culture obtained from Siberian larch (Larix sibiricaLedeb.) megagametophytes for whole genome de novosequencing // In Vitro Cellular and Developmental Biology – Plant. 2014. V. 50. № 5. P. 655-664.

 

Koralewski, T.E., Brooks, J.E. and K.V. Krutovsky. Molecular evolution of drought tolerance and wood strength related candidate genes in loblolly pine (Pinus taeda L.) // Silvae Genetica. 2014. V. 63. № 1-2. P. 59-66.

 

Zhivotovsky L.A., S.Yu. Kordicheva, E.G. Shaikhaev, G.A. Rubtsova, K.I. Afanasiev, M.V. Shitova, S.A. Fuller, G.O. Shaikhaev, A.J. Gharrett. 2014. Efficiency of the inbreeding coefficient f and other estimators in detecting null alleles, as revealed by empirical data of locus Oke3 across 65 populations of chum salmon, Oncorhynchus ketaJournal of Fish Biology (doi: 10.1111/jfb.12568)  - IF 1.734


Zhivotovsky L.A., A.A. Yurchenko, V.D. Nikitin, S.N. Safronov, M.V. Shitova, S.F. Zolotukhin, S.S. Makeev, S. Weiss, P.S. Rand, A.Yu. Semenchenko. 2014. Eco-geographic units, population hierarchy, and a two-level conservation strategy with reference to a critically endangered salmonid, Sakhalin taimen Parahucho perryi. Conservation Genetics (doi: 10.1007/s10592-014-0670-4) - IF 1.846

 

Pavlova G.V., Vergun A.A., Rybalkina E.Yu., Butovskaya P.R. , Ryskov A.P. Identification of Structural DNA Variations in Human Cell Cultures after Long-Term Passage.// Cell Cycle. 2015, Vol.14, Issue 1, doi. org/10.4161/15384101.2014.974427. IF 5.0

 

Slavokhotova AA, Rogozhin EA, Musolyamov AK, Andreev YA, Oparin PB, Berkut AA, Vassilevski AA, Egorov TA, Grishin EV, Odintsova TI. Novel antifungal α-hairpinin peptide from Stellaria media seeds: structure, biosynthesis, gene structure and evolution. Plant Mol Biol. 2014. V. 84(1-2). P. 189-202. IF 4.072

 

Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Structure of the yellow sac spider Cheiracanthium punctorium genes provides clues to evolution of insecticidal two-domain knottin toxins. Insect Mol Biol. 2014. V. 23(4). P. 527-38. IF 2.976

 

Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Genes and evolution of two-domain toxins from lynx spider venom. FEBS Lett. 2014. V. 588(5). P. 740-5. IF 3.341

 

Berkut AA, Usmanova DR, Peigneur S, Oparin PB, Mineev KS, Odintsova TI, Tytgat J, Arseniev AS, Grishin EV, Vassilevski AA. Structural Similarity between Defense Peptide from Wheat and Scorpion Neurotoxin Permits Rational Functional Design. J Biol Chem. 2014. V. 289(20). P. 14331-40. IF 4.6

 

Slavokhotova AA, Naumann TA, Price NP, Rogozhin EA, Andreev YA, Vassilevski AA, Odintsova TI. Novel mode of action in plant defense peptides: hevein-like antimicrobial peptides from wheat inhibit fungal metalloproteases. FEBS J. 2014. V. 281(20). P. 4754-64. IF 3.986

 

Zvyagin I.V. ,   Pogorelyy M.V., Ivanova M. E. , Komech M. E. , Shugay M. , Bolotin D.A. , Shelenkov A.A., Kurnosov A.A. ,  Staroverov D.B. , Chudakov D.M. , Lebedev Y.B., Mamedov  I.Z. Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing. PNAS, 2014, 111(16):5980-5, doi: 10.1073/pnas.1319389111 - IF 9.809  (лаб. функциональной геномики)

 

Ignatov KB, Barsova EV, Fradkov AF, Blagodatskikh KA, Kramarova TV, Kramarov VM. A strong strand displacement activity of thermostable DNA polymerase markedly improves the results of DNA amplification. Biotechniques. 2014 Aug 1;57(2):81-7. IF - 2.754 (лаб. анализа генома)

Статья поставлена журналом Biotechniques на первое место в обзоре достижений в области ПЦР за 2014 год BioTechniques - PCR: 2014 Year in Review

 

Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, Nordenfelt S, Li H, de Filippo C, Prüfer K, Sawyer S, Posth C, Haak W, Hallgren F, Fornander E, Rohland N, Delsate D, Francken M, Guinet JM, Wahl J, Ayodo G, Babiker HA, Bailliet G, Balanovska E, Balanovsky O, Barrantes R, Bedoya G, Ben-Ami H, Bene J, Berrada F, Bravi CM, Brisighelli F, Busby GB, Cali F, Churnosov M, Cole DE, Corach D, Damba L, van Driem G, Dryomov S, Dugoujon JM, Fedorova SA, Gallego Romero I, Gubina M, Hammer M, Henn BM, Hervig T, Hodoglugil U, Jha AR, Karachanak-Yankova S, Khusainova R, Khusnutdinova E, Kittles R, Kivisild T, Klitz W, Kučinskas V, Kushniarevich A, Laredj L, Litvinov S, Loukidis T, Mahley RW, Melegh B, Metspalu E, Molina J, Mountain J, Näkkäläjärvi K, Nesheva D, Nyambo T, Osipova L, Parik J, Platonov F, Posukh O, Romano V, Rothhammer F, Rudan I, Ruizbakiev R, Sahakyan H, Sajantila A, Salas A, Starikovskaya EB, Tarekegn A, Toncheva D, Turdikulova S, Uktveryte I, Utevska O, Vasquez R, Villena M, Voevoda M, Winkler CA, Yepiskoposyan L, Zalloua P, Zemunik T, Cooper A, Capelli C, Thomas MG, Ruiz-Linares A, Tishkoff SA, Singh L, Thangaraj K, Villems R, Comas D, Sukernik R, Metspalu M, Meyer M, Eichler EE, Burger J, Slatkin M, Pääbo S, Kelso J, Reich D, Krause J. Ancient human genomes suggest three ancestral populations for present-day Europeans. // Nature. 2014 Sep 18;513(7518):409-13. doi: 10.1038/nature13673. – IF F 42.351

 

Association between alcohol and cardiovascular disease: Mendelian randomisation analysis based on individual participant data.

Holmes MV, Dale CE, Zuccolo L, Silverwood RJ, Guo Y, Ye Z, Prieto-Merino D, Dehghan A, Trompet S, Wong A, Cavadino A, Drogan D, Padmanabhan S, Li S, Yesupriya A, Leusink M, Sundstrom J, Hubacek JA, Pikhart H, Swerdlow DI, Panayiotou AG, Borinskaya SA, Finan C, Shah S, Kuchenbaecker KB, Shah T, Engmann J, Folkersen L, Eriksson P, Ricceri F, Melander O, Sacerdote C, Gamble DM, Rayaprolu S, Ross OA, McLachlan S, Vikhireva O, Sluijs I, Scott RA, Adamkova V, Flicker L, Bockxmeer FM, Power C, Marques-Vidal P, Meade T, Marmot MG, Ferro JM, Paulos-Pinheiro S, Humphries SE, Talmud PJ, Mateo Leach I, Verweij N, Linneberg A, Skaaby T, Doevendans PA, Cramer MJ, Harst Pv, Klungel OH, Dowling NF, Dominiczak AF, Kumari M, Nicolaides AN, Weikert C, Boeing H, Ebrahim S, Gaunt TR, Price JF, Lannfelt L, Peasey A, Kubinova R, Pajak A, Malyutina S, Voevoda MI, Tamosiunas A, Maitland-van der Zee AH, Norman PE, Hankey GJ, Bergmann MM, Hofman A, Franco OH, Cooper J, Palmen J, Spiering W, Jong PA, Kuh D, Hardy R, Uitterlinden AG, Ikram MA, Ford I, Hyppönen E, Almeida OP, Wareham NJ, Khaw KT, Hamsten A, Husemoen LL, Tjønneland A, Tolstrup JS, Rimm E, Beulens JW, Verschuren WM, Onland-Moret NC, Hofker MH, Wannamethee SG, Whincup PH, Morris R, Vicente AM, Watkins H, Farrall M, Jukema JW, Meschia J, Cupples LA, Sharp SJ, Fornage M, Kooperberg C, LaCroix AZ, Dai JY, Lanktree MB, Siscovick DS, Jorgenson E, Spring B, Coresh J, Li YR, Buxbaum SG, Schreiner PJ, Ellison RC, Tsai MY, Patel SR, Redline S, Johnson AD, Hoogeveen RC, Hakonarson H, Rotter JI, Boerwinkle E, Bakker PI, Kivimaki M, Asselbergs FW, Sattar N, Lawlor DA, Whittaker J, Davey Smith G, Mukamal K, Psaty BM, Wilson JG, Lange LA, Hamidovic A, Hingorani AD, Nordestgaard BG, Bobak M, Leon DA, Langenberg C, Palmer TM, Reiner AP, Keating BJ, Dudbridge F, Casas JP; InterAct Consortium.  Association between alcohol and cardiovascular disease: Mendelian randomisation analysis based on individual participant data //  BMJ. 2014 Jul 10;349:g4164. doi: 10.1136/bmj.g4164. Free Full Text – IF 16.378
Подробнее

 

Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB. The ctenophore genome and the evolutionary origins of neural systems. // Nature. 2014 Jun 5;510(7503):109-14. – IF 42.351   ПРЕСС-РЕЛИЗ

 

Geographic population structure analysis of worldwide human populations infers their biogeographical origins.

Elhaik E, Tatarinova T, Chebotarev D, Piras IS, Maria Calò C, De Montis A, Atzori M, Marini M, Tofanelli S, Francalacci P, Pagani L, Tyler-Smith C, Xue Y, Cucca F, Schurr TG, Gaieski JB, Melendez C, Vilar MG, Owings AC, Gómez R, Fujita R, Santos FR, Comas D, Balanovsky O, Balanovska E, Zalloua P, Soodyall H, Pitchappan R, Ganeshprasad A, Hammer M, Matisoo-Smith L, Wells RS; Genographic Consortium.  // Nat Commun. 2014 Apr 29;5:3513. doi: 10.1038/ncomms4513.  - IF 10.742

 

FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Lassmann T, Itoh M, Summers KM, Suzuki H, Daub CO, Kawai J, Heutink P, Hide W, Freeman TC, Lenhard B, Bajic VB, Taylor MS, Makeev VJ, Sandelin A, Hume DA, Carninci P, Hayashizaki Y.  A promoter-level mammalian expression atlas. // Nature. 2014 Mar 27;507(7493):462-70. doi: 10.1038/nature13182. – IF 42.351   ПРЕСС-РЕЛИЗ

 

Salnikova L.E. Clinicopathologic Characteristics of Brain Tumors Are Associated with the Presence and Patterns of TP53 Mutations: Evidence from the IARC TP53 Database. // Neuromolecular Med. 2014 Jan 31. [Epub ahead of print] DOI: 10.1007/s12017-014-8290-1 – IF 4.492

 

Salnikova LE, Smelaya TV, Vesnina IN, Golubev AM, Moroz VV. Genetic Susceptibility to Nosocomial Pneumonia, Acute Respiratory Distress Syndrome and Poor Outcome in Patients at Risk of Critical Illness. // Inflammation  2014; 37(2):295-305. DOI: 10.1007/s10753-013-9740-x – IF 2.457

 

Khadzhieva MB, Lutcenko NN, Volodin IV, Morozova KV, Salnikova LE. Association of Oxidative Stress Related Genes with Idiopathic Recurrent Miscarriage. // Free Radical Research. 2014;48(5):534-541. DOI:10.3109/10715762.2014.891735 – IF 3.279

 

The FANTOM Consortium and the RIKEN PMI and CLST (DGT),   в том числе сотрудники ИОГен  Иван Кулаковский, Юлия Медведева, Александр Фаворов, Артем Касьянов, Илья Воронцов и Всеволод Макеев:   A promoter-level mammalian expression atlas // Nature 507, 462–470  (27 March 2014)  -- IF F 42.351

 

Lomakin YA, Zakharova MY, Stepanov AV, Dronina MA, Smirnov IV, Bobik TV, Pyrkov AY, Tikunova NV, Sharanova SN, Boitsov VM, Vyazmin SY, Kabilov MR, Tupikin AE, Krasnov AN, Bykova NA, Medvedeva YA, Fridman MV, Favorov AV, Ponomarenko NA, Dubina MV, Boyko AN, Vlassov VV, Belogurov Jr AA, Gabibov AG.  Heavy-light chain interrelations of MS-associated immunoglobulins probed by deep sequencing and rational variation.// Mol Immunol. 2014 Feb 14. pii: S0161-5890(14)00023-6. doi: 10.1016/j.molimm.2014.01.013 -- IF 2.645

 

Medvedeva YA, Khamis AM, Kulakovskiy IV, Ba-Alawi W, Bhuyan MS, Kawaji H, Lassmann T, Harbers M, Forrest AR, Bajic VB; FANTOM consortium. Effects of cytosine methylation on transcription factor binding sites. // BMC Genomics. 2014 Mar 26;15(1):119. doi: 10.1186/1471-2164-15-119. -- IF 4.40

 

Levitsky VG, Kulakovskiy IV, Ershov NI, Oschepkov DY, Makeev VJ, Hodgman TC, Merkulova TI. Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data. BMC Genomics. 2014 Jan 29;15(1):80. -- IF 4.40

 

Underhill PA, Poznik GD, Rootsi S, Järve M, Lin AA, Wang J, Passarelli B, Kanbar J, Myres NM, King RJ, Di Cristofaro J, Sahakyan H, Behar DM, Kushniarevich A, Sarac J, Saric T, Rudan P, Pathak AK, Chaubey G, Grugni V, Semino O, Yepiskoposyan L, Bahmanimehr A, Farjadian S, Balanovsky O, Khusnutdinova EK, Herrera RJ, Chiaroni J, Bustamante CD, Quake SR, Kivisild T, Villems R. The phylogenetic and geographic structure of Y-chromosome haplogroup R1a. // Eur J Hum Genet. 2014 Mar 26. doi: 10.1038/ejhg.2014.50  -- IF 4.319

 

Gogleva AA, Gelfand MS, Artamonova II. Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs. // BMC Genomics. 2014 Mar 17;15:202. IF -  4.041

 

Mezentsev A, Nikolaev A, Bruskin S. Matrix metalloproteinases and their role in psoriasis. // Gene. 2014 ;540(1):1-10. doi: 10.1016/j.gene.2014.01.068 -- IF 2.341

 

Nezametdinova V.Z., Zakharevich N.V., Alekseeva M.G., Mavletova D.A., Averina O.A., Danilenko V.N. Identification and characterization of the eukaryote-like serine/threonine protein kinases in Bifidobacterium. Archives of Microbiology.  2014, V. 196, Issue 2, pp 125-136. --  IF 1.905

 

Thompson PM, Stein JL, Medland SE, Hibar DP, Vasquez AA, Renteria ME, Toro R, Jahanshad N, Schumann G, Franke B,Wright MJ, Martin NG, Agartz I, Alda M, Alhusaini S, Almasy L, Almeida J, Alpert K, Andreasen NC, Andreassen OA, Apostolova LG, Appel K, Armstrong NJ, Aribisala B, Bastin ME, Bauer M, Bearden CE, Bergmann O, Binder EB, Blangero J, Bockholt HJ,Bøen E, Bois C, Boomsma DI, Booth T, Bowman IJ, Bralten J, Brouwer RM, Brunner HG, Brohawn DG, Buckner RL, Buitelaar J,Bulayeva K. et al. (2014). The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging and Behavior, Online First : 1-30.  -- IF 2.667

 

Sachkova MY, Slavokhotova AA, Grishin EV, Vassilevski AA. Genes and evolution of two-domain toxins from lynx spider venom. FEBS Lett. 2014 Jan 23. pii: S0014-5793(14)00044-1.  doi: 10.1016/j.febslet.2014.01.018. -- 3.582


Slavokhotova AA, Rogozhin EA, Musolyamov AK, Andreev YA, Oparin PB, Berkut AA, Vassilevski AA, Egorov TA, Grishin EV, Odintsova TI. Novel antifungal α-hairpinin peptide from Stellaria media seeds: structure, biosynthesis, gene structure and evolution. Plant Mol Biol. 2014 Jan; 84(1-2):189-202.  doi: 10.1007/s11103-013-0127-z.  --  IF 3.518

 

Evsyukov A., Ivanov D. Seection variability for Arg48His in Alcohol Dehydrogenase ADH1B among Asian populations. Human Biology. 2013. Vol. 85. Issue 4. P. 569-578. --  IF  1.522

 

Der Sarkissian C, Brotherton P, Balanovsky O, Templeton JE, Llamas B, Soubrier J, Moiseyev V, Khartanovich V, Cooper A, Haak W; Genographic Consortium. Mitochondrial genome sequencing in Mesolithic North East Europe Unearths a new sub-clade within the broadly distributed human haplogroup C1. // PLoS One. 2014 Feb 4;9(2):e87612. -- IF  3.730

 

Clarke AC, Prost S, Stanton JA, White WT, Kaplan ME, Matisoo-Smith EA; Genographic Consortium (Balanovsky OP). From cheek swabs to consensus sequences: an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes. // BMC Genomics. 2014 Jan 25;15:68 -- IF 4.40

 

 

2013


Raghavan M., Skoglund P., Graf K., Metspalu M., Albrechtsen A., Moltke I., Rasmussen S., Stafford_Jr T., Orlando L., Metspalu E., Karmin M., Tambets K., Rootsi S., Mägi R., Campos P., Balanovska E., Balanovsky O., Khusnutdinova E., Litvinov S., Osipova L., Fedorova S., Voevoda M., DeGiorgio M., Sicheritz-Ponten T., Brunak S., Demeshchenko S., Kivisild T., Villems R., Nielsen R., Jakobsson M., Willerslev E.

 

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans.

Nature  2014 Jan 2;505(7481):87-91.

doi: 10.1038/nature12736.

Epub 2013 Nov 20

 

Imact Factor

38.597

Brandt G., Haak W., Adler C.J., Roth C., Szécsényi-Nagy A., Karimnia S., Möller-Rieker S., Meller H., Ganslmeier R., Friederich S., Dresely V., Nicklisch N., Pickrell J.K., Sirocko F., Reich D., Cooper A., Alt K.W., The Genographic Consortium (...Balanovsky O. )

 

Ancient DNA reveals key stages in the formation of central European mitochondrial genetic diversity.

The oldest known genome of a modern human solves long-standing puzzles about the New World's genetic heritage.

Подробности здесь
Science. 2013. Oct 11. 342(6155). P. 257-261 31.027

Davydov II, Wohlgemuth I, Artamonova II, Urlaub H, Tonevitsky AG, Rodnina MV.

Evolution of the protein stoichiometry in the L12 stalk of bacterial and organellar ribosomes.

 

Nat Commun. 2013; 4:1387. doi: 10.1038/ncomms2373.

10.015

Brotherton P, Haak W, Templeton J, Brandt G, Soubrier J, Jane Adler C, Richards SM, Sarkissian CD, Ganslmeier R, Friederich S, Dresely V, van Oven M, Kenyon R, Van der Hoek MB, Korlach J, Luong K, Ho SY, Quintana-Murci L, Behar DM, Meller H, Alt KW, Cooper A;  Genographic Consortium, Balanovska E, Balanovsky O. et al.,

 

Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans.

Nat Commun. 2013;  4:1764.

10.015

Costa MD, Pereira JB, Pala M, Fernandes V, Olivieri A, Achilli A, Perego UA, Rychkov S, Naumova O, Hatina J, Woodward SR, Eng KK, Macaulay V, Carr M, Soares P, Pereira L, Richards MB.

A substantial prehistoric European ancestry amongst Ashkenazi maternal lineages.

Nat Commun. 2013 Oct 8;4:2543 10.015

Houston I, Peter CJ, Mitchell A, Straubhaar J, Rogaev E, Akbarian S.

Epigenetics in the human brain.

Neuropsychopharmacology. 2013 Jan; 38(1):183-9

8.678

Der Sarkissian C, Balanovsky et al., Genographic Consortium.

Ancient DNA reveals prehistoric gene-flow from Siberia in the complex human population history of North East Europe.

 

PLoS Genet. 2013; 9(2):e1003296.

8.517 .

Kulakovskiy IV, Medvedeva YA, Schaefer U, Kasianov AS, Vorontsov IE, Bajic VB, Makeev VJ.

 

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models.

Nucleic Acids Res. 2013 Jan; 41(Database issue):D195-202.

8.278

Leon DA, Shkolnikov VM, Borinskaya S, Casas JP, Evans A, Gil A, Kee F, Kiryanov N, McKee M, O'Doherty MG, Ploubidis GB, Polikina O, Vassiliev M, Blankenberg S, Watkins H.

 

Hazardous alcohol consumption is associated with increased levels of B-type natriuretic peptide: evidence from two population-based studies.

Eur J Epidemiol. 2013 May; 28(5):393-404.

5.118

Makeev VJ.

Predictive biology using systems and integrative analysis and methods.

 

J Biomol Struct Dyn. 2013; 31(1):1-3.

4.986

Permina EA, Medvedeva YA, Baeck PM, Hegde SR, Mande SC, Makeev VJ.

Identification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets.

 

J Biomol Struct Dyn. 2013; 31(1):115-24.

4.986

Naumova OY, Lee M, Rychkov SY, Vlasova NV, Grigorenko EL.

Gene expression in the human brain: the current state of the study of specificity and spatiotemporal dynamics.

 

Child Dev. 2013 Jan-Feb; 84(1):76-88. Review.

4.915

Elhaik E, Greenspan E, Staats S, Krahn T, Tyler-Smith C, Xue Y, Tofanelli S, Francalacci P, Cucca F, Pagani L, Jin L, Li H, Schurr TG, Greenspan B, Spencer Wells R;  Genographic Consortium (Balanovsky O)

 

The GenoChip: a new tool for genetic anthropology.

Genome Biol Evol. 2013; 5(5):1021-31.

4.759

McDonald H, Borinskaya S, Kiryanov N, Gil A, Helander A, Leon DA.

Comparative performance of biomarkers of alcohol consumption in a population sample of working-aged men in Russia: the Izhevsk Family Study.

 

Addiction. 2013 Sep; 108(9):1579-89.

4.746

Rębała K, Martínez-Cruz B, Tönjes A, Kovacs P, Stumvoll M, Lindner I, Büttner A, Wichmann HE, Siváková D, Soták M, Quintana-Murci L, Szczerkowska Z, Comas D; Genographic Consortium (Balanovsky O)

Contemporary paternal genetic landscape of Polish and German populations: from early medieval Slavic expansion to post-World War II resettlements.

Eur J Hum Genet. 2013;21(4):415-22 4.319

Utkina LL, Andreev YA, Rogozhin EA, Korostyleva TV, Slavokhotova AA, Oparin PB, Vassilevski AA, Grishin EV, Egorov TA, Odintsova TI.

Genes encoding 4-Cys antimicrobial peptides in wheat Triticum kiharae Dorof. et Migush.: multimodular structural organization, instraspecific variability, distribution and role in defence.

 

FEBS J. 2013 Aug;  280(15):3594-608.

4.25

Bykova NA, Favorov AV, Mironov AA.

Hidden Markov models for evolution and comparative genomics analysis.

 

PLoS One. 2013 Jun 7; 8(6):e65012.

3.730

Fantin YS, Neverov AD, Favorov AV, Alvarez-Figueroa MV, Braslavskaya SI, Gordukova MA, Karandashova IV, Kuleshov KV, Myznikova AI, Polishchuk MS, Reshetov DA, Voiciehovskaya YA, Mironov AA, Chulanov VP.

 

Base-calling algorithm with vocabulary (BCV) method for analyzing population sequencing chromatograms.

PLoS One. 2013;  8(1):e54835.

3.730

Boattini A, Martinez-Cruz B, Sarno S, Harmant C, Useli A, Sanz P, Yang-Yao D, Manry J, Ciani G, Luiselli D, Quintana-Murci L, Comas D, Pettener D;  Genographic Consortium. (Balanovsky O)

 

Uniparental markers in Italy reveal a sex-biased genetic structure and different historical strata.

PLoS One. 2013 May 29; 8(5):e65441.

3.730

Badro DA, Douaihy B, Haber M, Youhanna SC, Salloum A, Ghassibe-Sabbagh M, Johnsrud B, Khazen G, Matisoo-Smith E, Soria-Hernanz DF, Wells RS, Tyler-Smith C, Platt DE, Zalloua PA;  Genographic Consortium. (Balanovsky O)

 

Y-chromosome and mtDNA genetics reveal significant contrasts in affinities of modern Middle Eastern populations with European and African populations.

PLoS One. 2013; 8(1):e54616.

3.730

Bogomazova AN, Lagarkova MA, Panova AV, Nekrasov ED, Kiselev SL.

Reactivation of Х chromosome upon reprogramming leads to changes in the replication pattern and 5hmC accumulation.

 

Chromosoma. 2013 Aug 28.

3.340

Dumas E, Atyame CM, Milesi P, Fonseca DM, Shaikevich EV, Unal S, Makoundou P, Weill M, Duron O.

 

Population structure of Wolbachia and cytoplasmic introgression in a complex of mosquito species.

BMC Evol Biol. 2013 Sep 3;13:181 3.29

Gordienko EN, Kazanov MD, Gelfand MS.

Evolution of Pan-Genomes of Escherichia coli, Shigella spp., and Salmonella enterica.

 

J Bacteriol. 2013 Jun;195(12):2786-92

3.194

Lysenkova LN, Turchin KF, Korolev AM, Dezhenkova LG, Bekker OB, Shtil AA, Danilenko VN, Preobrazhenskaya MN.

Synthesis and cytotoxicity of oligomycin A derivatives modified in the side chain.

 

 

Bioorg Med Chem. 2013 Jun 1;21(11):2918-24.

2.903

Butovskaya PR, Butovskaya ML, Vasilyev VA, Lazebny OE, Shibalev DV, Veselovskaya EV, Udina IG, Ryskov A.P

Мolecular-Genetic Polymorphisms of Dopamine, Serotonin and Androgenic Systems as Molecular Markers of Success in Judo Wrestling Sportsmen.

J Bioanal Biomed (2013) .S3: 005. doi:10.4172/1948-593X.S3-005. 2.880

Astafieva AA, Rogozhin EA, Andreev YA, Odintsova TI, Kozlov SA, Grishin EV, Egorov TA.

A novel cysteine-rich antifungal peptide ToAMP4 from Taraxacum officinale Wigg. flowers.

 

Plant Physiol Biochem. 2013 Sep; 70:93-9

2.775

Minashkin MM, Salnikova LE, Lomonosov KM, Korobko IV, Tatarenko AO Possible contribution of GSTP1 and other xenobiotic metabolizing genes to vitiligo susceptibility. Arch Dermatol Res. 2013 Apr;305(3):233-9 2.708

Thompson TM, Sharfi D, Lee M, Yrigollen CM, Naumova OY, Grigorenko EL.

Comparison of whole-genome DNA methylation patterns in whole blood, saliva, and lymphoblastoid cell lines.

 

Behav Genet. 2013 Mar;43(2):168-76

2.606

Salnikova LE, Belopolskaya OB, Zelinskaya NI, Rubanovich AV.

The potential effect of gender in CYP1A1 and GSTM1 genotype-specific associations with pediatric brain tumor.

 

Tumour Biol. 2013 Oct 34(5):2709-19

2.518

Salnikova LE, Smelaya TV, Golubev AM, Rubanovich AV, Moroz VV.

CYP1A1, GCLC, AGT, AGTR1 gene-gene interactions in community-acquired pneumonia pulmonary complications.

Mol Biol Rep. 2013 Sep 26. 2.506

Salnikova LE, Smelaya TV, Moroz VV, Golubev AM, Rubanovich AV.

Functional polymorphisms in the CYP1A1, ACE, and IL-6 genes contribute to susceptibility to community-acquired and nosocomial pneumonia.

 

Int J Infect Dis. 2013 Jun; 17(6):e433-42.

2.498

Bourmenskaya O, Shubina E, Trofimov D, Rebrikov D, Sabdulaeva E, Nepsha O, Bozhenko V, Rogovskaya S, Sukhikh G.

 

Host gene expression profiling of cervical smear is eligible for cancer risk evaluation.

J Clin Pathol. 2013 Apr; 66(4):282-5

2.439

Chhatre, V., Byram, T.  Neale D.B., Wegrzyn J.L., Krutovsky K.V. Genetic structure and association mapping of adaptive and selective traits in the East Texas loblolly pine (Pinus taeda L.) breeding populations. Tree Genetics and Genomes 2013 9(5): 1161-1178 2.397

Salnikova LE, Smelaya TV, Moroz VV, Golubev AM, Rubanovich AV.

 

Host genetic risk factors for community-acquired pneumonia.

Gene. 2013 Apr 15; 518(2):449-56.

2.196

Klimina KM, Kjasova DK, Poluektova EU, Krügel H, Leuschner Y, Saluz HP, Danilenko VN.

Identification and characterization of toxin-antitoxin systems in strains of Lactobacillus rhamnosus isolated from humans.

Anaerobe. 2013 Aug;22:82-9

2.022

Kulakovskiy IV, Makeev VJ.

DNA Sequence Motif: A Jack of All Trades for ChIP-Seq Data.

 

Adv Protein Chem Struct Biol. 2013; 91:135-71.

1.83

Tayeh A, Estoup A, Hufbauer RA, Ravigne V, Goryacheva I, Zakharov IA, Lombaert E, Facon B.

Investigating the genetic load of an emblematic invasive species: the case of the invasive harlequin ladybird Harmonia axyridis.

 

Ecol Evol. 2013 Apr; 3(4):864-71.

1.184

Vorontsov IE, Kulakovskiy IV, Makeev VJ.

Jaccard index based similarity measure to compare transcription factor binding site models.

Algorithms Mol Biol. 2013 Sep 30;8(1):23.

1.61

Fertig E, Favorov A, Ochs M.

Identifying Context-Specific Transcription Factor Targets from Prior Knowledge and Gene Expression Data.

 

IEEE Trans Nanobioscience. 2013 May 16.

1.286

Krutovsky, K.V., Tretyakova I.N.,  Oreshkova N.V.,  Pak M.E., Kvitko O.V., and Vaganov E.A.

Somaclonal variation of haploid in vitro tissue culture obtained from Siberian larch (Larix sibirica Ledeb.) megagametophytes for whole genome de novo sequencing.

 

In Vitro Cellular and Developmental Biology – Plant 2014 (in press) 1.139
Koralewski, T.E., Brooks, J.E. and Krutovsky K.V. Molecular evolution of drought tolerance and wood strength related candidate genes in loblolly pine (Pinus taeda L.)
Silvae Genetica 2013 (in press) 0.44
Kulakovskiy I, Levitsky V, Oshchepkov D, Bryzgalov L, Vorontsov I, Makeev V.

From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites.

J Bioinform Comput Biol. 2013 Feb; 11(1):1340004. The first impact factor will be available in 2013

Mukha DV, Pasyukova EG, Kapelinskaya TV, Kagramanova AS.

Endonuclease domain of the Drosophila melanogaster R2 non-LTR retrotransposon and related retroelements: a new model for transposition.

 

Front Genet. 2013 Apr 26;  4:63.

The first impact factor will be available in 2013

Lukiw WJ, Andreeva TV, Grigorenko AP, Rogaev EI.

Studying micro RNA Function and Dysfunction in Alzheimer's Disease.

 

Front Genet. 2013 Feb 6; 3:327.

The first impact factor will be available in 2013